Southern Caribbean Neogene palaeobiogeography revisited. New data from the Pliocene of Cubagua,Venezuela

Based on new data from the Pliocene gastropod assemblage of Cubagua Island, Venezuela, the palaeobiogeography of the southern Caribbean is reviewed. The data obtained from the southern Caribbean assemblages demonstrate a highly endemic fauna along the northern coasts of South America, distinct from that found in the neighbouring Isthmian region to the west, which has probably been in place since at least the early Neogene. These assemblages are characterised by a relative stability at generic level, but an extremely high turnover rate at specific level. The name Colombian–Venezuelan–Trinidad Subprovince is chosen over Puntagavilanian Subprovince and chorotypes and chronotypes are selected for the Gatunian Province and the Colombian–Venezuelan–Trinidad Subprovince.     

Integrated Assessment of Heavy Metal Pollution in the Surface Sediments of the Laizhou Bay and the Coastal Waters of the Zhangzi Island,China: Comparison among Typical Marine Sediment Quality Indices

The total concentrations and chemical forms of heavy metals (Cd, Cr, Cu, Ni, Pb and Zn) in the surface sediments of the Laizhou Bay and the surrounding marine area of the Zhangzi Island (hereafter referred to as Zhangzi Island for short) were obtained and multiple indices and guidelines were applied to assess their contamination and ecological risks. The sedimentary conditions were fine in both of the two studied areas according to the marine sediment quality of China. Whereas the probable effects level guideline suggested that Ni might cause adverse biological effects to occur frequently in some sites. All indices used suggested that Cd posed the highest environmental risk in both the Laizhou Bay and the Zhangzi Island, though Cd may unlikely be harmful to human and ecological health due to the very low total concentrations. The enrichment factor (EF) showed that a substantial portion of Cr was delivered from anthropogenic sources, whereas the risk assessment code (RAC) indicated that most Cr was in an inactive state that it may not have any adverse effect either. Moreover, the results of EF and geoaccumulation index were consistent with the trend of the total metal concentrations except for Cd, while the results of RAC and potential ecological risk factor did not follow the same trend of their corresponding total metal concentrations. We also evaluated the effects of using different indices to assess the environmental impact of these heavy metals.     

厦门湾中华白海豚潜在生态廊道识别及人类活动干扰评估

生态廊道具有维持或恢复生态连通性的功能,对于连接生物栖息地、保护物种多样性具有重要意义。现有的生态廊道研究主要集中于陆地,而海洋生态系统具有水体广泛连通、缺乏直观的景观斑块等特点,导致海洋生态廊道的研究成为长期以来的科学难题。以栖息地位于厦门湾的国家一级保护动物中华白海豚(Sousa chinensis)为对象,尝试基于物种分布模型和最小成本路径分析法建立海洋生态廊道的识别方法。研究采用物种分布模型识别厦门湾内中华白海豚的适宜生境分布区和节点,并利用模型产出的生境适宜性结果生成海洋中的阻力表面,模拟计算节点与节点间在阻力表面上的最小成本路径,从而生成物种扩散网络。研究结果显示,厦门湾中华白海豚的分布主要受到航道距离、到岸线距离和叶绿素浓度三项因素的影响,主要适宜生境位于西海域至九龙江口和大嶝海域。潜在的核心生态廊道面积93.19km²,次级生态廊道面积170.41km²,九龙江口-鼓浪屿南侧-黄厝-大小嶝岛沿线可能是厦门湾中华白海豚的主要迁移路线。在此基础上,从用海空间重叠和桥梁影响两方面开展了人类活动对廊道的干扰评估。评估结果显示旅游活动和...     

钦州湾春、夏季浮游植物群落特征及其与环境因子的关系

为了探究人类活动对钦州湾浮游植物群落的影响,分别于2013年3月和7月进行了两航次综合调查。采用聚类和典型对应分析法,分别对浮游植物群落及其与环境因子的关系进行了研究。结果表明春夏两季浮游植物共有3门45属115种,其中硅藻100种、甲藻14种、蓝藻1种。两季浮游植物生态类群分别以暖温带广布种和暖温带近岸种为主,季节性差异明显。典型对应分析表明,影响浮游植物分布的主要环境因子是悬浮物、pH、盐度和营养盐。受入海径流和外来水团等因子影响,钦州湾浮游植物群落在夏季更易聚为相似性群落,春季则呈斑块化分布。     

Changes in the species composition of benthic macroalgal communities of the upper subtidal zone on a coral reef in Sanya Bay (Hainan Island, China) during 2009–2012

Investigations of macroalgae were carried out on a coral reef at the Luhuitou Peninsula in Sanya Bay (Hainan Island, China) in the upper subtidal zone at a depth of 0.5 to 4 m during the dry season (in April 2009 and 2012). In total, 130 species, varieties, and forms of marine macroalgae were found: 71 (54%) Rhodophyta, 33 (25%) Chlorophyta, and 26 (21%) Phaeophyceae. In terms of the number of species and the floristic composition of algae in the communities, the reef benthic flora in the subtidal zone of Sanya Bay, which is polluted by municipal waste waters and aquaculture wastes, was close to the flora of Indo-Pacific coral reefs situated in areas with low pollution. In 2009 and 2012, the algal turf communities differed both in the algal species diversity and in the composition of dominant species. These differences might be due to an annual periodicity of changes in vegetation: algal turf patches are detached from the hard substrate and a new algal community is formed at this location.     

Ethnobotany of Atlantic Forest Coastal Communities: II. Diversity of Plant Uses at Sepetiba Bay (SE Brazil)

This is an ethnobotanical study of Atlantic Forest coastal communities located at Sepetiba Bay, Rio de Janeiro State, Brazil. Atlantic Forest remnants are top priority conservation areas, and include native communities that depend on fish and small-scale agriculture. We conducted fieldwork in the community of Calhaus (Jaguanum Island) from 1989 to 1991, and interviewed adults on their use of plants. We examined the diversity of medicinal plants used among communities of different islands and found results similar to previous research at Gamboa (Itacuruçá Island); communities living in smaller islands and on islands further from the coast use a lower diversity of plants. Also, older islanders show a deeper knowledge of medicinal plants than younger islanders.     

Annotated List of Ichthyofauna of Inland and Coastal Waters of Sakhalin Island. 1. Families Petromyzontidae—Salmonidae

Journal of Ichthyology - A complete annotated list of marine, brackish-water, and freshwater ichthyofauna of Sakhalin Island and the adjacent southern part of the Sea of ​​Okhotsk is...     

Were all trilobites fully marine? Trilobite expansion into brackish water during the early Palaeozoic

Trilobites, key components of early Palaeozoic communities, are considered to have been invariably fully marine. Through the integration of ichnological, palaeobiological, and sedimentological datasets within a sequence-stratigraphical framework, we challenge this assumption. Here, we report uncontroversial trace and body fossil evidence of their presence in brackish-water settings. Our approach allows tracking of some trilobite groups foraying into tide-dominated estuaries. These trilobites were tolerant to salinity stress and able to make use of the ecological advantages offered by marginal-marine environments migrating up-estuary, following salt wedges either reflecting amphidromy or as euryhaline marine wanderers. Our data indicate two attempts of landward exploration via brackish water: phase 1 in which the outer portion of estuaries were colonized by olenids (Furongian–early late Tremadocian) and phase 2 involving exploration of the inner to middle estuarine zones by asaphids (Dapingian–Darriwilian). This study indicates that tolerance to salinity stress arose independently among different trilobite groups.     

Cryptic freshwater amoeba species in the bottom sediments of Nivå Bay (Øresund, Baltic Sea)

An aquarium containing a portion of freshly collected brackish-water sediment from Nivå Bay (Øresund, Baltic Sea) was sampled to determine the species of amoebae present and refilled with inorganic salt medium to achieve freshwater salinity. After 2 months incubation, the diversity of amoebae was again studied, and the salinity was restored to the original level. The aquarium was incubated for a further 2 months and the amoeba fauna was studied for the last time. A number of freshwater species appeared in the sample after the first salinity shift, while some marine species disappeared. Most marine species did not re-appear after the salinity in the aquarium was restored, but one marine species not noted previously was recorded. The experiment illustrates the presence of ‘cryptic diversity’ of amoebae in natural habitats and demonstrates that laboratory manipulation of the salinity of a sample prior to inoculation may achieve an increased recovery of species from a brackish-water habitat.     

Fishing spots and sea tenure: Incipient forms of local management in Atlantic forest coastal communities

Recent work has dealt with the local management of aquatic resources as an alternative to Hardin's (1968) tragedy of the commons. In communities with no formal management of resources, informal ownership of fishing spots or conflicts with outside competitors may determine the basis for future local management. In this study, I analyze the use of aquatic resources by five fishing communities on the Atlantic Forest coast of southeast Brazil: Búzios Island, Puruba, and Picinguaba in São Paulo State, and Jaguanum and Itacuruçá Islands at Sepetiba Bay in Rio de Janeiro State. Informal ownership of fishing spots, used for set gillnet fishing, is regulated by kin ties at Búzios Island. The artisanal fishers of Sepetiba Bay, especially those from Jaguanum Island, have a conflict with Bay intruders, such as the shrimp and herring trawlers. Two coastal communities, Puruba and Picinguaba, have conflicts with fishing regulations from a State Park (Parque Estadual da Serra do Mar),created in 1977. The transformation of populated areas of the Atlantic Forest to Extractive Reserves might be a way to avoid conflicts with intruders and with governmental agencies, and to involve local populations in management. Kinship rules at Búzios Island and the territorial behavior of fishers at Sepetiba Bay may form a basis for local organization.     

杭州湾内外海域秋季浮游动物群落的比较

本文比较了杭州湾湾外海域(122.10°-122.58° E, 30.54°-30.93° N)和湾内不同海域(北岸东侧: 121.67°- 121.87° E, 30.68°-30.83° N; 南岸东侧: 121.60°-121.85° E, 29.95°-30.24° N; 北岸西侧: 121.31°-121.56° E, 30.58°- 30.77° N)秋季浮游动物的群落组成、累积优势度曲线以及多样性指数(H')等群落结构特征, 并进行了差异性分析。结果表明: 湾外海域的群落组成与湾内海域的3个群落之间均有较大的差异。湾外海域的群落I是以中华假磷虾(Pseudeuphausia sinica)等近海种、背针胸刺水蚤(Centropages dorsispinatus)等沿岸低盐种为主, 其次是外海种。湾内南岸东侧海域的群落II主要以左突唇角水蚤(Labidocera sinilobata)等沿岸低盐种为主, 近海种次之。湾内北岸东侧海域的群落III是以真刺唇角水蚤(Labidocera euchaeta)等沿岸低盐种、虫肢歪水蚤(Tortanus vermiculus)等河口半咸水种组成的混合群落。湾内北岸西侧海域群落IV是以虫肢歪水蚤为代表的河口半咸水种为主的群落。总的说来, 这一水域向西和向北方向出现更低盐度适应性的群落。从累积优势度曲线来看, 湾外海域群落I与湾内北岸东侧群落III的累积优势度上升趋势均相对平缓, 但群落III的初始累积优势度略高于群落I; 而与群落I相比, 湾内南岸东侧的群落II与北岸西侧的群落IV的初始累积优势度均很高。湾外海域群落I的初始累积优势度较低, 显示出群落I的优势种较多, 而单一优势种优势度低于湾内3个群落。方差分析结果表明: 湾外海域的浮游动物多样性指数与湾内3个海域均有极显著差异(P < 0.01), 而湾内各海域之间均无显著性差异(P > 0.05)。说明湾外浮游动物群落的多样性高于湾内海域。湾内外海域浮游动物群落特征之间有较大差异, 其主要原因是影响各自群落的主导水团明显不同。     

Biodiversity and Enzyme Activity of Marine Fungi with 28 New Records from the Tropical Coastal Ecosystems in Vietnam

The coastal marine ecosystems of Vietnam are one of the global biodiversity hotspots, but the biodiversity of marine fungi is not well known. To fill this major gap of knowledge, we assessed the genetic diversity (ITS sequence) of 75 fungal strains isolated from 11 surface coastal marine and deeper waters in Nha Trang Bay and Van Phong Bay using a culture-dependent approach and 5 OTUs (Operational Taxonomic Units) of fungi in three representative sampling sites using next-generation sequencing. The results from both approaches shared similar fungal taxonomy to the most abundant phylum (Ascomycota), genera (Candida and Aspergillus) and species (Candida blankii) but were different at less common taxa. Culturable fungal strains in this study belong to 3 phyla, 5 subdivisions, 7 classes, 12 orders, 17 families, 22 genera and at least 40 species, of which 29 species have been identified and several species are likely novel. Among identified species, 12 and 28 are new records in global and Vietnamese marine areas, respectively. The analysis of enzyme activity and the checklist of trophic mode and guild assignment provided valuable additional biological information and suggested the ecological function of planktonic fungi in the marine food web. This is the largest dataset of marine fungal biodiversity on morphology, phylogeny and enzyme activity in the tropical coastal ecosystems of Vietnam and Southeast Asia. Biogeographic aspects, ecological factors and human impact may structure mycoplankton communities in such aquatic habitats.     

福建及中国其他沿岸海域中国鲎资源分布现状调查

采用调访渔民、浅海底拖网、野外观测潮间带亲鲎产卵和幼鲎孵育情况等调查方法,重点调查了福建沿岸海域中国鲎(Tachypleus tridentatus)资源分布和数量,并走访调查了浙江省、广东省、海南省、广西壮族自治区和台湾地区金门岛等地代表性的中国鲎栖息地,对中国沿岸海域中国鲎资源现状作了较全面的调查。结果表明,大部分海滩已多年未见中国鲎上岸产卵,中国鲎在上岸之前已被渔民通过底拖网捕获,能见到幼鲎的海滩寥寥无几,中国鲎已经从大部分海域消失,中国鲎资源量濒临枯竭。目前尚存少量中国鲎的海域主要是东山湾和北部湾海域。金门岛海域则因为人工放流和设立了中国鲎保护区,中国鲎资源得到较好的恢复。中国鲎资源衰竭的主要原因是人类的过度捕捞、栖息地的破坏和海域环境污染等。中国鲎资源的保护迫在眉睫。建议将中国鲎列入国家级重点保护动物名录,增设中国鲎自然保护区,加强渔业管理以及人工增殖放流等措施。     

Intertidal Communities of Severnyi Bay (Northern Sakhalin Island)

The paper describes the composition, structure and vertical distribution of intertidal communities in Severnyi Bay (the northern extremity of Sakhalin Island).     

Finding of Sea Urchin Pseudocentrotus depressus in South Kuril Islands

This article is a report on finding a new species of Russia fauna, the low sea urchin Pseudocentrotus depressus (A. Agassiz), in the South Kuril Strait near Shikotan Island.     

莱州湾东岸潮下带大型底栖动物群落beta多样性格局及其驱动因素

群落β多样性格局的形成与维持机制一直是群落生态学研究的热点与核心。然而, 与陆生生态系统相比, 海洋生态系统尤其是海洋底栖生态系统中生物群落β多样性的研究明显滞后。本研究从分类(即物种组成)和功能(即性状组成)两个方面出发, 应用Mantel分析和基于矩阵的多元回归(multiple regression on distance matrices, MRM)分析, 探究了莱州湾东岸潮下带大型底栖动物群落β多样性及其周转(turnover)和嵌套(nestedness)组分与环境因子和空间距离的关系, 揭示了环境过滤和扩散限制两种生态学过程对其群落构建机制的影响。结果显示: (1)莱州湾东岸潮下带大型底栖动物群落的分类与功能性状β多样性均维持在较高水平且均以周转组分占主导, 表明研究区域大型底栖动物群落在物种和功能性状组成上差异较大, 而这种差异大部分来自物种或功能性状在空间或群落间的更替; (2)空间地理距离对大型底栖动物群落分类与功能性状β多样性及其组分无显著影响(Mantel检验, P > 0.05), 表明扩散限制对莱州湾东岸潮下带大型底栖动物群落的影响有限; (3) MRM分析表明, 沉积物总有机质(total organic matter, TOM)和粉砂含量显著影响大型底栖动物群落分类β多样性, 而TOM则显著影响功能性状β多样性。上述结果表明, 环境过滤是驱动莱州湾东岸潮下带大型底栖动物群落构建机制的首要因素。本研究阐明了莱州湾东岸潮下带大型底栖动物群落构建机制, 同时也为理解我国其他海域大型底栖动物群落的形成与维持机制提供了参考。     

Brackish-water Plathelminthes from the Faroe Islands

Species-rich communities of brackish-water plathelminths of the European continental coast and of the north American Atlantic coast are known to be most similar. In contrast nothing has been recorded about a possible settlement of corresponding faunal elements between the continents on volcanic islands which were covered by glaciers in the Pleistocene. At the Faroe Islands 2 freshwater species, 11 marine-euryhaline species and 12 genuine brackish-water organisms were found in minute brackish-water biotopes with highly variable salinity. Macrostomum curvituba Luther, Minona baltica Karling & Kinnader and Coronhelmis lutheri Ax are the most abundant species. Several brackish-water plathelminths are able to tolerate freshwater conditions. Most probably they have evolved mechanisms which are comparable to those of limnetic organisms allowing long distance transport across the sea in an inactive state.     

Diversity of the free-living marine and freshwater Copepoda (Crustacea) in Costa Rica: a review

The studies on marine copepods of Costa Rica started in the 1990’s and focused on the largest coastal-estuarine systems in the country, particularly along the Pacific coast. Diversity is widely variable among these systems: 40 species have been recorded in the Culebra Bay influenced by upwelling, northern Pacific coast, only 12 in the Gulf of Nicoya estuarine system, and 38 in Golfo Dulce, an anoxic basin in the southern Pacific coast of the country. Freshwater environments of Costa Rica are known to harbor a moderate diversity of continental copepods (25 species), which includes 6 calanoids, 17 cyclopoids and only two harpacticoids. Of the +100 freshwater species recorded in Central America, six are known only from Costa Rica, and one appears to be endemic to this country. The freshwater copepod fauna of Costa Rica is clearly the best known in Central America. Overall, six of the 10 orders of Copepoda are reported from Costa Rica. A previous summary by 2001 of the free-living copepod diversity in the country included 80 marine species (67 pelagic, 13 benthic). By 2009, the number of marine species increased to 209: 164 from the Pacific (49% of the copepod fauna from the Eastern Tropical Pacific) and 45 from the Caribbean coast (8% of species known from the Caribbean Basin). Both the Caribbean and Pacific species lists are growing. Additional collections of copepods at Cocos Island, an oceanic island 530 km away of the Pacific coast, have revealed many new records, including five new marine species from Costa Rica. Currently, the known diversity of marine copepods of Costa Rica is still in development and represents up to 52.6% of the total marine microcrustaceans recorded in the country. Future sampling and taxonomic efforts in the marine habitats should emphasize oceanic environments including deep waters but also littoral communities. Several Costa Rican records of freshwater copepods are likely to represent undescribed species. Also, the biogeographic relevance of the inland copepod fauna of Costa Rica requires more detailed surveys.     

Study of bacterial communities in Antarctic coastal waters by a combination of 16S rRNA and 16S rDNA sequencing

An ecological study on distribution of Antarctic bacterial communities was determined by 16S-based phylogenetic analyses of clone libraries derived from RNA and DNA extracted from two different marine areas and compared between each other. Superficial seawater samples were collected from four stations in Ross Sea, three of them located in Rod Bay and one in Evans Cove; for each station two clone libraries (16S rDNA and 16S rRNA) were prepared and evident divergences between DNA and RNA libraries of each site were obtained. Of all phylotypes 93.6% were found in RNA libraries; in contrast, only 31 phylotypes (70.5%) were retrieved from total microbial community (DNA libraries). DNA and RNA sequences related to gamma-Proteobacteria and Bacteroidetes groups, typical for Antarctic sea-ice bacterial communities, were detected in analysed sites. 16S rDNA and rRNA libraries derived from the two different areas were enriched by picophytoplanktonic 16S sequences of plastid and mitochondrion origins, reflecting that the algal blooms occurred during sampling (Antarctic summer 2003). The finding in Rod Bay libraries of high percentage of DNA clones apparently affiliated with beta-Proteobacteria typical for activated sludges and well water could be explained by the presence of a sewage depuration system at this site. Obtained results clearly demonstrate that combination of 16S rDNA and 16S rRNA gene sequencing is preferred approach to have a more reliable vision on the composition of microbial communities.     

Distinct latitudinal community patterns of Arctic marine vertebrates along the East Greenlandic coast detected by environmental DNA

Aim

Greenland is one of the places on Earth where the effects of climate change are most evident. The retreat of sea ice has made East Greenland more accessible for longer periods during the year. East Greenland fjords have been notoriously difficult to study due to their remoteness, dense sea ice conditions and lack of infrastructure. As a result, biological monitoring across latitudinal gradients is scarce in East Greenland and relies on sporadic research cruises and trawl data from commercial vessels. We here aim to investigate the transition in fish and marine mammal communities from South to Northeast Greenland using environmental DNA (eDNA).

Location

South to Northeast Greenland.

Methods

We investigated the transition in fish and marine mammal communities from South to Northeast Greenland using eDNA metabarcoding of seawater samples. We included both surface and mesopelagic samples, collected over approximately 2400 km waterway distance, by sampling from Cape Farewell to Ella Island in August 2021.

Results

We demonstrate a clear transition in biological communities from south to northeast, with detected fish and mammal species matching known distributions. Samples from the southern areas were dominated by capelin (Mallotus villosus) and redfish (Sebastes), whereas northeastern samples were dominated by polar cod (Boreogadus saida), sculpins (Myoxocephalus) and ringed seal (Pusa hispida). We provide newly generated 12S rRNA barcodes from 87 fish species, bringing the public DNA database closer to full taxonomic coverage for Greenlandic fish species for this locus.

Main Conclusions

Our results demonstrate that eDNA sampling can detect latitudinal shifts in marine biological communities of the Arctic region, which can supplement traditional fish surveys in understanding species distributions and community compositions of marine vertebrates. Importantly, sampling of eDNA can be a feasible approach for detecting northward range expansions in remote areas as climate change progresses.