Species interactions and distinct microbial communities in high Arctic permafrost affected cryosols are associated with the CH4 and CO2 gas fluxes

Microbial metabolism of the thawing organic carbon stores in permafrost results in a positive feedback loop of greenhouse gas emissions. CO₂ and CH₄ fluxes and the associated microbial communities in Arctic cryosols are important in predicting future warming potential of the Arctic. We demonstrate that topography had an impact on CH₄ and CO₂ flux at a high Arctic ice-wedge polygon terrain site, with higher CO₂ emissions and lower CH₄ uptake at troughs compared to polygon interior soils. The pmoA sequencing suggested that USCα cluster of uncultured methanotrophs is likely responsible for observed methane sink. Community profiling revealed distinct assemblages across the terrain at different depths. Deeper soils contained higher abundances of Verrucomicrobia and Gemmatimonadetes, whereas the polygon interior had higher Acidobacteria and lower Betaproteobacteria and Deltaproteobacteria abundances. Genome sequencing of isolates from the terrain revealed presence of carbon cycling genes including ones involved in serine and ribulose monophosphate pathways. A novel hybrid network analysis identified key members that had positive and negative impacts on other species. Operational Taxonomic Units (OTUs) with numerous positive interactions corresponded to Proteobacteria, Candidatus Rokubacteria and Actinobacteria phyla, while Verrucomicrobia and Acidobacteria members had negative impacts on other species. Results indicate that topography and microbial interactions impact community composition.     

温度对土壤氧化大气CH4的影响

讨论了温度对土壤氧化大气CH4的影响及其机理。当温度较低时土壤也具有一定的氧化大气CH4的能力,两者具有很高的相关关系,但是由于CH4氧化菌对大气CH4具有很强的亲和力以及大气CH4氧化所需活化能较低,因此土壤氧化大气CH4对温度的敏感度远低于产CH4,导致温度系数Q10较小。当大气CH4和O2扩散进入土壤的速率等于土壤中CH4和O2消耗的速率时,大气CH4氧化达到最大值,此时的土壤温度就是CH4氧化的最佳温度。如果温度继续升高并大于最佳温度,由于CH4氧化菌无法与利用O2能力更强的硝化细菌和其它微生物竞争利用土壤空气中有限的O2,使得土壤中CH4氧化菌的繁殖和活性降低。这一作用机理的提出较好地解释了为什么随着温度升高土壤氧化大气CH4能力呈低高低的态势。     

Transpiration as a function of soil temperature and soil water stress

An apparatus was developed for the measurement of transpiration rates of Trifolium repens. The transpiration rates were measured under controlled conditions of soil water stress and soil temperature. Other environmental parameters such as air temperature, relative humidity, light intensity and air speed were held constant. Diffusive resistances were calculated and stomatal aperture changes were recorded for all treatment combinations. A significant interaction between soil water stress and soil temperature was observed for stomatal closures. Stomatal closure was observed even in the so-called wet range of soil water stress. An increase in mesophyll resistance or incipient drying was observed for several treatment combinations. The mesophyll resistance was shown to increase as soil water stress increased.     

CH4 emission from a hollow-ridge complex in a raised bog: The role of CH4 production and oxidation

The aim of this study was to correlate magnitude andcontrols of CH₄ fluxes with the microtopographyand the vegetation in a hollow-ridge complex of araised bog. High CH₄ emission rates were measuredfrom hollows and mud-bottom hollows, while hummocksconsumed atmospheric CH₄ at a low rate. Thehighest emissions were measured from plots with Eriophorum vaginatum and Scheuchzeriapalustris. CH₄ emission ceased after Scheuchzeria had been clipped below the water table,indicating the importance of this aerenchymatic plantas a conduit for CH₄.Peat in the upper catotelm of hollows was younger andless decomposed than in hummocks. Potential CH₄production in vitro was higher and themethanogenic association was better adapted to highertemperatures in hollow than in hummock peat. Highertemperatures in hollows resulted in a strongerCH₄ source in hollows than in hummocks. Negativefluxes from hummocks indicated that even in wetlandsmethanotrophic bacteria exist that are able to oxidizeCH₄ at atmospheric mixing ratios, and thatoxidation controls CH₄ emission completely. TheCH₄ mixing ratio was low in the acrotelm, but itincreased within the catotelm. Comparing fluxesmeasured in static chambers with fluxes calculatedfrom the porewater CH₄ profiles it was deducedthat the zone of methane oxidation was located closeto the water table.In hollows, CH₄ production at in situtemperature was far higher than emission into theatmosphere, corresponding to an oxidation rate ofnearly 99%. The CH₄ flux between the catotelmand the acrotelm of hollows was also higher than theemission, indicating the importance of CH₄oxidation in the aerobic acrotelm, too. CH₄microprofiles showed that CH₄ oxidation inmud-bottom hollows was confined to the topmost 2 mm,and that in Sphagnum-covered hollows CH₄oxidation occurred at the lower edge of green Sphagnum-parts.     

CH4 production and oxidation processes in a boreal fen ecosystem after long‐term water table drawdown

Fens, which extend over vast areas in the Northern hemisphere, are sources of the greenhouse gas CH₄. Climate change scenarios predict a lowering water table (WT) in mires. To study the effect of WT drawdown on CH₄ dynamics in a fen ecosystem, we took advantage of a WT drawdown gradient near a ground water extraction plant. Methane fluxes and CH₄ production and oxidation potentials were related to microbial communities responsible for the processes in four mire locations (wet, semiwet, semidry, and dry). Principal component analyses performed on the vegetation, pH, CH₄, and WT results clearly separated the four sampling locations in the gradient. Long‐term lowering of WT was associated with decreased coverage of Sphagnum and aerenchymatic plants, decreased CH₄ field emissions and CH₄ production potential. Based on mcrA terminal restriction fragment length polymorphism the methanogen community structure correlated best with the methane production and coverage of aerenchymatic plants along the gradient. Methanosarcinaceae and Methanocellales were found at the pristine wet end of the gradient, whereas the Fen cluster characterized the dry end. The methane‐oxidizing bacterial community consisted exclusively of Methylocystis bacteria, but interestingly of five different alleles (T, S, R, M, and O) of the particulate methane monooxygenase marker gene pmoA. The M allele was dominant in the wet locations, and the occurrence of alleles O, S, and T increased with drainage. The occurrence of the R allele that characterized the upper peat layer correlated with CH₄ oxidation potential. These results advance our understanding of mire dynamics after long‐term WT drawdown and of the microbiological bases of methane emissions from mires.     

Microbial Respiration in Arctic Upland and Peat Soils as a Source of Atmospheric Carbon Dioxide

Knowledge on soil microbial respiration (SMR) rates and thus soil-related CO₂ losses from Arctic soils is vital because of the crucial importance of this ecosystem within the global carbon (C) cycle and climate system. Here, we measured SMR from various habitats during the growing season in Russian subarctic tundra by applying two different approaches: ¹⁴C partitioning approach and root trenching. The variable habitats encompassed peat and mineral soils, bare and vegetated surfaces and included both dry and moist ones. The field experiment was complemented by laboratory studies to measure bioavailability of soil carbon and identify sources of CO₂. Differences in bioavailability of soils, measured in the laboratory as basal soil respiration rates, were generally greater than inter-site differences in SMR rates measured in situ, suggesting secondary constraints at field conditions, such as soil C content. There was a tendency towards lower SMR in vegetated peat plateaus compared to upland mineral tundra (on average 137 vs. 185 g CO₂ m^?2 growing season^?1, respectively), but no significant differences were found. Surprisingly, the bare surfaces (peat circles) with 3500-year-old C at the surface exhibited about the largest SMR among all sites as shown by both methods. This was related to the general development of peat plateaus in the region, and uplifting of deeper peat with high C content to the surface during the genesis of peat circles. This observation is particularly relevant for decomposition of deeper peat in vegetated peat plateaus, where soil material similar to the bare surfaces can be found. The data indicate that the large stocks of C stored in permafrost peatlands are principally available for decomposition despite old age.     

Habitat choice in shoals of roach as a function of water temperature and feeding rate

Temperature and food availability are two important factors which affect fish growth and therefore are expected to influence habitat choice in fish. In this study, shoals of 16 juvenile roach, Rutilus rutilus , were given a choice between two chambers that differed in temperature by 1·5°C or 3°C whereas food availability was the same in both chambers (ratio 1 : 1) or higher in the colder one (ratio 4 : 1). The number of fish in each chamber was recorded for 10 min each during a pre-feeding, feeding and post-feeding period. Roach generally preferred the warmer over the colder chamber during the pre-feeding periods. Temperature had a significant effect on the distribution of fish during all three time periods whereas food availability was a significant factor only during the feeding period. The important role of temperature was emphasized further by the fact that a relatively small difference in the temperature gradient of 1·5°C had a stronger effect on fish distribution than a four times higher feeding rate during the feeding period. The implications for growth rates of such short-term decision-making of roach are discussed.     

Role of Megafauna and Frozen Soil in the Atmospheric CH4 Dynamics

Modern wetlands are the world’s strongest methane source. But what was the role of this source in the past? An analysis of global ¹⁴C data for basal peat combined with modelling of wetland succession allowed us to reconstruct the dynamics of global wetland methane emission through time. These data show that the rise of atmospheric methane concentrations during the Pleistocene-Holocene transition was not connected with wetland expansion, but rather started substantially later, only 9 thousand years ago. Additionally, wetland expansion took place against the background of a decline in atmospheric methane concentration. The isotopic composition of methane varies according to source. Owing to ice sheet drilling programs past dynamics of atmospheric methane isotopic composition is now known. For example over the course of Pleistocene-Holocene transition atmospheric methane became depleted in the deuterium isotope, which indicated that the rise in methane concentrations was not connected with activation of the deuterium-rich gas clathrates. Modelling of the budget of the atmospheric methane and its isotopic composition allowed us to reconstruct the dynamics of all main methane sources. For the late Pleistocene, the largest methane source was megaherbivores, whose total biomass is estimated to have exceeded that of present-day humans and domestic animals. This corresponds with our independent estimates of herbivore density on the pastures of the late Pleistocene based on herbivore skeleton density in the permafrost. During deglaciation, the largest methane emissions originated from degrading frozen soils of the mammoth steppe biome. Methane from this source is unique, as it is depleted of all isotopes. We estimated that over the entire course of deglaciation (15,000 to 6,000 year before present), soils of the mammoth steppe released 300–550 Pg (10¹⁵ g) of methane. From current study we conclude that the Late Quaternary Extinction significantly affected the global methane cycle.     

大气甲烷的源和汇与土壤氧化(吸收)甲烷研究进展

甲烷是主要的温室气体之一,对温室效应的贡献仅次于CO2,而每分子甲烷温室增温潜力是CO2的21倍,因此确定全球大气甲烷的源与汇,并与其进行估算,预测已成为目前全球环境变化及温室效应研究的一个热点。本文概述了国内外大气甲烷烷源与汇研究的进展情况,详述了土壤氧化（吸收）大气与内源甲烷机理及其影响因子（如土地利用情况,环境甲烷浓度,土壤温度,湿度,pH值,孔隙状况等）,最后指出,通过在长白山森林垂直分布带开展地带性土壤甲烷氧化（吸收）研究,对估算我国温带至寒带,高山苔原带土壤吸收甲烷含量,乃至全球甲烷汇具有重要意义。     

Low-Concentration Kinetics of Atmospheric CH4 Oxidation in Soil and Mechanism of NH4+ Inhibition

NH₄⁺ inhibition kinetics for CH₄ oxidation were examined at near-atmospheric CH₄ concentrations in three upland forest soils. Whether NH₄⁺-independent salt effects could be neutralized by adding nonammoniacal salts to control samples in lieu of deionized water was also investigated. Because the levels of exchangeable endogenous NH₄⁺ were very low in the three soils, desorption of endogenous NH₄⁺ was not a significant factor in this study. The K_m(app) values for water-treated controls were 9.8, 22, and 57 nM for temperate pine, temperate hardwood, and birch taiga soils, respectively. At CH₄ concentrations of ≤15 μl liter⁻¹, oxidation followed first-order kinetics in the fine-textured taiga soil, whereas the coarse-textured temperate soils exhibited Michaelis-Menten kinetics. Compared to water controls, the K_m(app) values in the temperate soils increased in the presence of NH₄⁺ salts, whereas the V_max(app) values decreased substantially, indicating that there was a mixture of competitive and noncompetitive inhibition mechanisms for whole NH₄⁺ salts. Compared to the corresponding K⁺ salt controls, the K_m(app) values for NH₄⁺ salts increased substantially, whereas the V_max(app) values remained virtually unchanged, indicating that NH₄⁺ acted by competitive inhibition. Nonammoniacal salts caused inhibition to increase with increasing CH₄ concentrations in all three soils. In the birch taiga soil, this trend occurred with both NH₄⁺ and K⁺ salts, and the slope of the increase was not affected by the addition of NH₄⁺. Hence, the increase in inhibition resulted from an NH₄⁺-independent mechanism. These results show that NH₄⁺ inhibition of atmospheric CH₄ oxidation resulted from enzymatic substrate competition and that additional inhibition that was not competitive resulted from a general salt effect that was independent of NH₄⁺.Atmospheric CH₄ contributes substantially to the greenhouse effect, and the concentration of atmospheric CH₄ has increased dramatically in the past century because of human activity associated with agriculture, land use changes, and industry (34, 35). Bacterial oxidation of atmospheric CH₄ in well-drained soils is an important regulator of atmospheric CH₄ concentration, yet the organisms responsible remain unidentified and the physiology of the process is poorly understood (9, 35, 36). Although soil CH₄ consumption is inhibited by a wide variety of anthropogenic disturbances, such as agriculture, N deposition, and forestry (12, 17, 22, 23, 32, 43, 44), predictable inhibition patterns have failed to emerge, which has made it difficult to predict the effects of disturbance on soil CH₄ flux in various ecosystems. The most commonly reported disturbance effect is that of NH₄⁺ fertilizers, which can suppress soil CH₄ consumption by up to 70% (1, 8, 10, 17, 22, 32, 33, 37, 38, 43). In the field, inhibition may occur immediately following fertilization, may be delayed for months to years, or may never occur despite years of chronic fertilization (9, 17). This variety of responses may stem at least in part from the distribution of physiologically diverse methane oxidizer populations across sites (17, 18, 20).Of the various NH₄⁺ inhibition patterns, immediate inhibition is the best documented. As in field studies, however, physiological laboratory studies have produced variable results, suggesting that there may be multiple inhibition mechanisms (15, 17, 26–28, 36, 39). Physicochemical similarities between CH₄ and NH₃ may permit these two compounds to compete for enzyme active sites so that fortuitous NH₃ oxidation competitively inhibits CH₄ oxidation (38). Although this mechanism has been demonstrated to occur in pure cultures of methanotrophic bacteria (6) and in a CH₄-producing agricultural soil (15), it has not been demonstrated to occur in well-drained, nonagricultural mineral soils, which comprise the dominant terrestrial sink for atmospheric CH₄ (14, 38, 45), nor has it been demonstrated to occur at near-atmospheric CH₄ concentrations. In many cases, the kinetics of immediate NH₄⁺ inhibition in soil cannot be reconciled easily with substrate competition (15, 16, 26–28, 39). An alternative mechanism has been proposed, whereby the toxicity of NO₂⁻ or NH₂OH produced by fortuitous NH₄⁺ oxidation suppresses methanotrophic activity (26, 27, 39). Hence, multiple inhibition mechanisms may be involved, and these mechanisms may vary with the physiology of different CH₄ oxidizer populations (17).Two physiologically distinct communities of CH₄ oxidizers apparently exist in soil. One group, generally associated with atmospheric CH₄ consumption, exhibits an extremely high affinity for CH₄. Representatives of this group have yet to be cultivated or otherwise identified (9). The second group exhibits a much lower affinity for CH₄ and is generally associated with common methanotrophs, such as those that have been studied in pure culture for many years (2, 9). In upland mineral soils, only high-affinity activity is usually detectable without artificial enrichment with high CH₄ concentrations in the laboratory. However, the only prior study in which kinetic constants for NH₄⁺ inhibition of soil CH₄ oxidation were reported was conducted in a periodically moist, organic matter-rich agricultural soil with demonstrable methanogenesis (15, 16). Such a soil potentially harbors a rich community of CH₄ oxidizers representing a continuum from low-affinity organisms to high-affinity organisms. Although this important investigation demonstrated that NH₄⁺ inhibits CH₄ oxidation via enzymatic substrate competition in an agricultural humisol, it is unclear to what extent its results apply to well-drained mineral soils lacking endogenous CH₄ sources. Physiological studies of soil CH₄ oxidation typically derive kinetic constants from oxidation rates at CH₄ concentrations ranging from atmospheric levels (∼1.7 μl liter⁻¹) to ≫K_m for high-affinity CH₄ oxidizers. Even in soil in which only high-affinity organisms are active, the CH₄-oxidizing enzyme(s) could respond differently to NH₄⁺ at high CH₄ concentrations than at near-atmospheric concentrations (15, 39). Thus, to study NH₄⁺ inhibition of high-affinity CH₄ oxidizers per se, it would be preferable to examine inhibition kinetics at near-atmospheric CH₄ concentrations in a soil with no apparent endogenous CH₄ source.A common shortcoming of NH₄⁺ inhibition studies, regardless of the organisms involved, has been a lack of attention to nonammoniacal salt effects despite numerous reports of substantial inhibition by such salts (1, 10, 15, 17, 24). King and Schnell (28) examined the effects of several Cl⁻ and SO₄²⁻ salts and concluded that nonammoniacal salts indirectly inhibit CH₄ oxidation by desorbing endogenous NH₄⁺ from cation exchange sites in the soil, which then directly inhibit CH₄ oxidation. Many N-limited soils, however, have extremely low concentrations of exchangeable NH₄⁺, yet are substantially inhibited by nonammoniacal salts (17), suggesting that these salts have NH₄⁺-independent effects on atmospheric CH₄ oxidizers. Additional mechanisms may alter inhibition kinetics, thus hindering the diagnosis of NH₄⁺-specific inhibition.With the limitations described above in mind, we used a simple steady-state kinetics approach to assess the mechanism of NH₄⁺ inhibition of CH₄ oxidation at near-atmospheric concentrations (1.8 to 15 μl liter⁻¹) in three well-drained, N-limited forest soils that lack known endogenous CH₄ sources. In addition, we examined the effects of nonammoniacal salts in parallel samples to judge the utility of these salts as experimental controls for neutralizing NH₄⁺-independent salt effects.     

Temperature response of permafrost soil carbon is attenuated by mineral protection

Climate change in Arctic ecosystems fosters permafrost thaw and makes massive amounts of ancient soil organic carbon (OC) available to microbial breakdown. However, fractions of the organic matter (OM) may be protected from rapid decomposition by their association with minerals. Little is known about the effects of mineral‐organic associations (MOA) on the microbial accessibility of OM in permafrost soils and it is not clear which factors control its temperature sensitivity. In order to investigate if and how permafrost soil OC turnover is affected by mineral controls, the heavy fraction (HF) representing mostly MOA was obtained by density fractionation from 27 permafrost soil profiles of the Siberian Arctic. In parallel laboratory incubations, the unfractionated soils (bulk) and their HF were comparatively incubated for 175 days at 5 and 15°C. The HF was equivalent to 70 ± 9% of the bulk CO₂ respiration as compared to a share of 63 ± 1% of bulk OC that was stored in the HF. Significant reduction of OC mineralization was found in all treatments with increasing OC content of the HF (HF‐OC), clay‐size minerals and Fe or Al oxyhydroxides. Temperature sensitivity (Q10) decreased with increasing soil depth from 2.4 to 1.4 in the bulk soil and from 2.9 to 1.5 in the HF. A concurrent increase in the metal‐to‐HF‐OC ratios with soil depth suggests a stronger bonding of OM to minerals in the subsoil. There, the younger ¹⁴C signature in CO₂ than that of the OC indicates a preferential decomposition of the more recent OM and the existence of a MOA fraction with limited access of OM to decomposers. These results indicate strong mineral controls on the decomposability of OM after permafrost thaw and on its temperature sensitivity. Thus, we here provide evidence that OM temperature sensitivity can be attenuated by MOA in permafrost soils.     

Photosynthesis and transpiration of monterey pine seedlings as a function of soil water suction and soil temperature

Rates of photosynthesis, respiration, and transpiration of Monterey pine (Pinus radiata D. Don) were measured under controlled conditions of soil water suction and soil temperature. Air temperature, relative humidity, light intensity, and air movement were maintained constant. Rates of net photosynthesis, respiration, and transpiration decreased with increasing soil water suction. The decrease in the rates of net photosynthesis and transpiration as a function of the soil temperature at low soil water suctions may be attributed to changes in the viscosity of water. At soil water suctions larger than 0.70 bars rates of transpiration and net photosynthesis may be affected in the same proportion by changes in stomatal apertures.     

Importance of permafrost as a source of water for plants in east Siberian taiga

Stable oxygen isotope ratios of plant water (sap water) were observed at Spasskaya Pad experimental forest near Yakutsk, Russia in 1997–1999. The ¹⁸O of sap water in larch trees (Larix gmelinii) decreased soon after leaf unfolding every year, indicating that snowmelt water was used in the beginning of summer. During mid to late summer, a clear difference in the water source used by plants was observed between wet summers and severe drought summers. The ¹⁸O values of water in larch trees were high (–17.8 to –16.1) in August 1999 (wet summer), but low (–20.4 to –19.7) in August 1998 (drought summer). These results indicated that plants used rainwater during a wet summer, but meltwater from permafrost was used by plants during a drought summer. One important role of permafrost is to provide a direct source of water for plants in a severe drought summer; another role is to keep surplus water in the soil until the next summer. If this permafrost system is disturbed by future global warming, unique monotypic stands of deciduous larch trees in east Siberia might be seriously damaged in a severe drought summer.     

Contribution of methanotrophic and nitrifying bacteria to CH4 and NH4+ oxidation in the rhizosphere of rice plants as determined by new methods of discrimination

Methanotrophic and nitrifying bacteria are both able to oxidize CH4 as well as NH4+. To date it is not possible to estimate the relative contribution of methanotrophs to nitrification and that of nitrifiers to CH4 oxidation and thus to assess their roles in N and C cycling in soils and sediments. This study presents new options for discrimination between the activities of methanotrophs and nitrifiers, based on the competitive inhibitor CH3F and on recovery after inhibition with C2H2. By using rice plant soil as a model system, it was possible to selectively inactivate methanotrophs in soil slurries at a CH4/CH3F/NH4+ molar ratio of 0.1:1:18. This ratio of CH3F to NH4+ did not affect ammonia oxidation, but methane oxidation was inhibited completely. By using the same model system, it could be shown that after 24 h of exposure to C2H2 (1,000 parts per million volume), methanotrophs recovered within 24 h while nitrifiers stayed inactive for at least 3 days. This gave an "assay window" of 48 h when only methanotrophs were active. Applying both assays to model microcosms planted with rice plants demonstrated a major contribution of methanotrophs to nitrification in the rhizosphere, while the contribution of nitrifiers to CH4 oxidation was insignificant.     

Biogeochemistry of organic carbon, CO2, CH4, and trace elements in thermokarst water bodies in discontinuous permafrost zones of Western Siberia

Active processes of permafrost thaw in Western Siberia increase the number of soil subsidencies, thermokarst lakes and thaw ponds. In continuous permafrost zones, this process promotes soil carbon mobilisation to water reservoirs, as well as organic matter (OM) biodegradation, which produces a permanent flux of carbon dioxide (CO₂) to the atmosphere. At the same time, the biogeochemical evolution of aquatic ecosystems situated in the transition zone between continuous permafrost and permafrost-free terrain remains poorly known. In order to better understand the biogeochemical processes that occur in thaw ponds and lakes located in discontinuous permafrost zones, we studied ~30 small (1–100,000 m²) shallow (<1 m depth) lakes and ponds formed as a result of permafrost subsidence and thaw of the palsa bog located in the transition zone between the tundra and forest-tundra (central part of Western Siberia). There is a significant increase in dissolved CO₂ and methane (CH₄) concentration with decreasing water body surface area, with the largest supersaturation with respect to atmospheric CO₂ and CH₄ in small (<100 m²) permafrost depressions filled with thaw water. Dissolved organic carbon (DOC), conductivity, and metal concentrations also progressively increase from large lakes to thaw ponds and depressions. As such, small water bodies with surface areas of 1–100 m² that are not accounted for in the existing lake and pond databases may significantly contribute to CO₂ and CH₄ fluxes to the atmosphere, as well as to the stocks of dissolved trace elements and organic carbon. In situ lake water incubation experiments yielded negligible primary productivity but significant oxygen consumption linked to the mineralisation rate of dissolved OM by heterotrophic bacterioplankton, which produce a net CO₂ flux to the atmosphere of 5 ± 2.5 mol C m² year^?1. The most significant result of this study, which has long-term consequences on our prediction of aquatic ecosystem development in the course of permafrost degradation is CO₂, CH₄, and DOC concentrations increase with decreasing lake age and size. As a consequence, upon future permafrost thaw, the increase in the number of small water bodies, accompanied by the drainage of large thermokarst lakes to the hydrological network, will likely favour (i) the increase of DOC and colloidal metal stocks in surface aquatic systems, and (ii) the enhancement of CO₂ and CH₄ fluxes from the water surface to the atmosphere. According to a conservative estimation that considers that the total area occupied by water bodies in Western Siberia will not change, this increase in stocks and fluxes could be as high as a factor of ten.     

Conformational changes in single-strand DNA as a function of temperature by SANS

Small-angle neutron scattering (SANS) measurements were performed on a solution of single-strand DNA, 5'-ATGCTGATGC-3', in sodium phosphate buffer solution at 10 degrees C temperature increments from 25 degrees C to 80 degrees C. Cylindrical, helical, and random coil shape models were fitted to the SANS measurements at each temperature. All the shapes exhibited an expansion in the diameter direction causing a slightly shortened pitch from 25 degrees C to 43 degrees C, an expansion in the pitch direction with a slight decrease in the diameter from 43 degrees C to 53 degrees C, and finally a dramatic increase in the pitch and diameter from 53 degrees C to 80 degrees C. Differential scanning calorimeter scans of the sequence in solution exhibited a reversible two-state transition profile with a transition temperature of 47.5 +/- 0.5 degrees C, the midpoint of the conformational changes observed in the SANS measurements, and a calorimetric transition enthalpy of 60 +/- 3 kJ mol(-1) that indicates a broad transition as is observed in the SANS measurements. A transition temperature of 47 +/- 1 degrees C was also obtained from ultraviolet optical density measurements of strand melting scans of the single-strand DNA. This transition corresponds to unstacking of the bases of the sequence and is responsible for the thermodynamic discrepancy between its binding stability to its complementary sequence determined directly at ambient temperatures and determined from extrapolated values of the melting of the duplex at high temperature.