Biofilms and biodiversity: an interactive exploration of aquatic microbial biotechnology and ecology

The study of biofilms provides a unique educational opportunity to examine ecosystems, biodiversity and applications of environmental biotechnology. There are many variables that could be studied for measuring the interactions between bacterial biofilms and invertebrate biodiversity as a method for assessing the health of aquatic ecosystems. These interactions also lend themselves to an easily replicated model system which can be used to reach a wide audience with an educational opportunity for students as well as a professional development opportunity for teachers. At the foundation of the research are invaluable basic microbiology skills: strain collection, isolation, cultivation and characterization. Through the additional process of characterizing, identifying and enumerating invertebrate organisms that attach to bacterial biofilms in aquatic ecosystems, there evolved a multidisciplinary class laboratory activity that has found broad application. This activity is captivating not only to undergraduate microbiology students but to middle and high school students and their teachers. The demand for information about the activity has led to the development of a truly interactive web-based lesson, which in turn has resulted in additional inquiries and further refinement of the lesson as an undergraduate independent research course. Both of these are freely accessible on the web, with growing international participation and data exchange. Journal of Industrial Microbiology & Biotechnology (2000) 24, 334–338. Received 19 April 1999/ Accepted in revised form 17 February 2000     

淡水生态系统中的TOP—DOWN效应与生物多样性保护

淡水生态系统中高营养级类群可以对低营养级类群产生强烈的影响,最终导致整个生态环境的改变,这一现象被称作下行（ｔｏｐｄｏｗｎ）效应。本文对ｔｏｐｄｏｗｎ的含义特别是鱼类所产生ｔｏｐｄｏｗｎ效应的结果进行了阐述,提出了ｔｏｐｄｏｗｎ效应还表现在当原来生态系统中的高营养级类群缺少时,也会造成生态系统结构与功能发生变化的观点。最后,根据淡水生态系统ｔｏｐｄｏｗｎ效应的特点,认为在淡水生态系统的生物多样性保护中,应注意高营养级类群的保护和谨慎地对待引种问题     

中国生物多样性研究的30个核心问题

在联合国《生物多样性公约》生效30年和《生物多样性》创刊30周年之际, 我们通过问卷调查从281名中国研究人员收集到763个生物多样性相关的研究问题, 通过归纳与整理, 并参考英国生态学会提出的100个生态学基本问题, 从中筛选出30个核心问题。这些问题涉及7个方面: 演化与生态(6个问题)、种群(4个问题)、群落与多样性(7个问题)、生态系统与功能(3个问题)、人类影响与全球变化(4个问题)、方法与监测(4个问题)、生物多样性保护(2个问题)。前5个方面主要聚焦在物种形成、生物多样性维持等的关键过程与机制、生物多样性与生态功能关系、全球变化对生物多样性的影响机制等, 第6方面主要涉及生物监测与预测、数据共享等, 第7方面涉及多样性保护、自然与人类健康关系这两个与公众息息相关的重要话题。这30个问题的筛选难免存在偏颇, 希望能以此为契机, 促进我国生物多样性研究人员对本领域核心问题的深入思考与探讨。     

生物多样性保护的景观规划途径

景观规划设计在生物多样性保护中起着决定性的作用。基于不同的保护哲学,生物多样性保护的景观规划途径主要可分为两种：一是以物种为核心的景观规划途径,另一种是以景观元素为核心和出发点的规划途径。前者首先确定物种,然后根据物种的生态特性来设计景观格局,后者则以各种尺度的景观元素作为保护对象,根据其空间位置和关系设计景观格局。多种空间战略被认为有利于生物多样性的保护,包括保护核心栖息地、建立缓冲区、构筑廊道、增加景观异质性和引入或恢复栖息地。落实这些空间战略必须首先回答选择什么和在什么地方设计上述景观元素的问题。对此,目前尚没有很好的答案。传统的生物保护战略被动地强调现存濒危物种和景观元素的保护,如果将物种运动和生态过程作为一个能动的景观控制过程来对待,我们将会有一种全新的景观规划途径。其中有三个方面的概念对这种新的景观规划途径有启发意义：即景观的空间构型对生态过程的作用,生物进化空间轨迹与景观格局设计及景观阻力与潜在的生态基础设施的设计。景观生态安全格局正是在这些方向上的一个新的探索。     

Managing rock outcrops to improve biodiversity conservation in Australian agricultural landscapes

Summary  Rocky outcrops are prominent geological features in agricultural landscapes worldwide. Reptiles are a major component of these habitats and some species are restricted to, and more abundant on, rocky outcrops than in remnant vegetation. Rock outcrops are important to reptiles because they provide resources that are often limited in the surrounding landscape (e.g. micro-gradients in climatic conditions, basking- and retreat-sites). However, there is a knowledge gap in the literature addressing the conservation value of small, rocky outcrops. Management may be necessary to reverse habitat degradation in these systems. We identify four key areas of management that need to be addressed to improve outcrop habitat values and enhance biodiversity conservation in agricultural landscapes. Specific actions involve: (i) protecting outcrops from processes that cause damage to rock microhabitat, (ii) monitoring and managing changes in vegetation structure to maintain thermally suitable environments, (iii) applying integrated pest animal control and (iv) improving matrix management to enhance inselberg function and landscape connectivity. Further research is required to evaluate the efficacy of different management regimes on outcrop biota. We hope this paper will provide the stimulus for land managers to incorporate rocky outcrops in future biodiversity conservation programmes.     

Global loss of avian evolutionary uniqueness in urban areas

Urbanization, one of the most important anthropogenic impacts on Earth, is rapidly expanding worldwide. This expansion of urban land‐covered areas is known to significantly reduce different components of biodiversity. However, the global evidence for this effect is mainly focused on a single diversity measure (species richness) with a few local or regional studies also supporting reductions in functional diversity. We have used birds, an important ecological group that has been used as surrogate for other animals, to investigate the hypothesis that urbanization reduces the global taxonomical and/or evolutionary diversity. We have also explored whether there is evidence supporting that urban bird communities are evolutionarily homogenized worldwide in comparison with nonurban ones by means of using evolutionary distinctiveness (how unique are the species) of bird communities. To our knowledge, this is the first attempt to quantify the effect of urbanization in more than one single diversity measure as well as the first time to look for associations between urbanization and phylogenetic diversity at a large spatial scale. Our findings show a strong and globally consistent reduction in taxonomic diversity in urban areas, which is also synchronized with the evolutionary homogenization of urban bird communities. Despite our general patterns, we found some regional differences in the intensity of the effect of cities on bird species richness or evolutionary distinctiveness, suggesting that conservation efforts should be adapted locally. Our findings might be useful for conservationists and policymakers to minimize the impact of urban development on Earth's biodiversity and help design more realistic conservation strategies.     

Urban biodiversity in local newspapers: a historical perspective

Due to rapid urbanization the conservation and values of urban wildlife are becoming increasingly important study objects. Unfortunately, the lack of historical data makes it difficult to assess the effects of long-term urban land-use changes and human attitudes on local biodiversity. In this paper we show that old newspapers may in some cases provide useful historical data on both urban wildlife and local attitudes towards it. In the city of Turku, southwest Finland, the leading newspaper published 316 observations or reports on local urban mammals, birds and reptiles in 1890–1920, and in addition to these a lot of information on contemporary attitudes towards urban wildlife. At least 12 species of noncaptive mammals, 32 species of birds, and three reptile species were documented in newspapers. The newspaper data seem fairly reliable, and provide valuable information on the development of urban biodiversity. In the study period animals visiting urban areas were often persecuted, in which both adults and children (mainly schoolboys) participated actively. Birds were persecuted less frequently than mammals or reptiles. Some bird species, especially 'song-birds', were actively supported by winter-feeding and by constructing nest-boxes. According to newspapers local people were interested in local biodiversity, especially on phenological events, and benefited from it by getting esthetic pleasure, pet animals, and information on seasonal changes.     

城市生物多样性分布格局研究进展

城市生物多样性分布格局由自然生态环境和城市化过程所决定;其动态和机理与自然生态系统迥然不同.城市生物多样性为城市生态系统提供了诸多生态系统功能和服务,对改善城市环境、维持城市可持续发展有着重要的意义和作用.城市化过程深刻改变了城市的生物多样性分布格局,导致了诸如本地物种多样性降低、外来物种多样性增加、物种同质化等一系列问题.近年来,城市生物多样性受到学界高度关注,大量研究结果既回答了一些关键性问题,又提出了诸多新的论题和挑战.分析了当前城市生物多样性分布格局研究的若干热点问题,总结了影响城市生物多样性格局的主要因素,探讨了城市生物多样性格局研究方法的关键问题,指出了未来城市生物多样性研究的发展方向,特别强调了城市生物多样性的生态系统功能研究在未来城市生物多样性研究中的重要地位.     

Urbanization drives cross‐taxon declines in abundance and diversity at multiple spatial scales

The increasing urbanization process is hypothesized to drastically alter (semi‐)natural environments with a concomitant major decline in species abundance and diversity. Yet, studies on this effect of urbanization, and the spatial scale at which it acts, are at present inconclusive due to the large heterogeneity in taxonomic groups and spatial scales at which this relationship has been investigated among studies. Comprehensive studies analysing this relationship across multiple animal groups and at multiple spatial scales are rare, hampering the assessment of how biodiversity generally responds to urbanization. We studied aquatic (cladocerans), limno‐terrestrial (bdelloid rotifers) and terrestrial (butterflies, ground beetles, ground‐ and web spiders, macro‐moths, orthopterans and snails) invertebrate groups using a hierarchical spatial design, wherein three local‐scale (200 m × 200 m) urbanization levels were repeatedly sampled across three landscape‐scale (3 km × 3 km) urbanization levels. We tested for local and landscape urbanization effects on abundance and species richness of each group, whereby total richness was partitioned into the average richness of local communities and the richness due to variation among local communities. Abundances of the terrestrial active dispersers declined in response to local urbanization, with reductions up to 85% for butterflies, while passive dispersers did not show any clear trend. Species richness also declined with increasing levels of urbanization, but responses were highly heterogeneous among the different groups with respect to the richness component and the spatial scale at which urbanization impacts richness. Depending on the group, species richness declined due to biotic homogenization and/or local species loss. This resulted in an overall decrease in total richness across groups in urban areas. These results provide strong support to the general negative impact of urbanization on abundance and species richness within habitat patches and highlight the importance of considering multiple spatial scales and taxa to assess the impacts of urbanization on biodiversity.     

Application of plant metabarcoding to identify diverse honeybee pollen forage along an urban–agricultural gradient

Understanding animal foraging ecology requires large sample sizes spanning broad environmental and temporal gradients. For pollinators, this has been hampered by the laborious nature of morphologically identifying pollen. Identifying pollen from urban environments is particularly difficult due to the presence of diverse ornamental species associated with consumer horticulture. Metagenetic pollen analysis represents a potential solution to this issue. Building upon prior laboratory and bioinformatic methods, we applied quantitative multilocus metabarcoding to characterize the foraging ecology of honeybee colonies situated in urban, suburban, mixed suburban–agricultural and rural agricultural sites in central Ohio, USA. In cross‐validating a subset of our metabarcoding results using microscopic palynology, we find strong concordance between the molecular and microscopic methods. Our results suggest that forage from the agricultural site exhibited decreased taxonomic diversity and temporal turnover relative to the urban and suburban sites, though the generalization of this observation will require replication across additional sites and cities. Our work demonstrates the power of honeybees as environmental samplers of floral community composition at large spatial scales, aiding in the distinction of taxa characteristically associated with urban or agricultural land use from those distributed ubiquitously across the sampled landscapes. Observed patterns of high forage diversity and compositional turnover in our more urban sites are likely reflective of the fine‐grain heterogeneity and high beta diversity of urban floral landscapes at the scale of honeybee foraging. This provides guidance for future studies investigating how relationships between urbanization and measures of pollinator health are mediated by variation in floral resource dynamics across landscapes.     

水生态保护目标制定的理论与应用

我国目前处于生态环境管理的转型期,尚未形成统领水生生物、生物栖息地、水质与水量等要素的水生态保护体系。在总结相关水生态研究成果的基础上,梳理形成了基于水生态系统时空尺度和状态梯度效应理论的水生态保护目标制定构想与方法,分析了淡水生物完整性对自然地理要素、水环境压力、栖息地质量的响应机制,提出以水生态“功能分区-状态评价-问题诊断-目标预设-可达性评估-目标确定”为主线的水生态保护目标制定技术体系,研发了生物完整性评价、水生态保护目标预设和可达性分析等技术方法。以江苏省常州市为典型水生态功能区应用案例,验证了技术体系的适用性与可行性,取得良好的应用效果。水生态保护目标制定理论和方法方面的研究探索可为全国相关工作提供参考依据。     

Macrophytes in Urban Stream Rehabilitation: Establishment, Ecological Effects, and Public Perception

Efforts to rehabilitate degraded urban streams generally focus on improving physical habitat and rarely include reestablishing biota such as macrophytes. Our objectives in this study were to propagate and transplant native macrophytes into a South Island, New Zealand, urban stream undergoing rehabilitation, assess macrophyte survival and growth, and determine whether native macrophytes suppress non-native macrophytes and/or enhance stream invertebrate communities. Effects of native macrophytes on invertebrates and non-native macrophytes were assessed after transplanting patches of native macrophytes into a 230-m-long stream section. A 100-m-long section upstream was left unplanted for subsequent comparisons. Following the study, a survey was conducted to gauge public opinion about the rehabilitation project and determine whether macrophytes were prominent in perceptions of stream health. In the first growing season, native macrophyte cover in the planted stream section increased from 1.5 to 20%, and then decreased during winter. Regrowth from rhizomes led to rapid aboveground growth during the second year, when cover reached 51%. Non-native macrophytes colonized the stream the first year, but native macrophytes appeared to limit the spread of non-natives, which were absent in the planted section by the second spring. Native macrophyte establishment did not enhance invertebrate communities as predicted; few invertebrate metrics differed significantly between the planted and unplanted sections. Pollution- and sediment-tolerant invertebrate taxa were abundant in both sections, suggesting that invertebrate colonization was limited by water quality or sedimentation, not macrophyte composition. Survey respondents considered the stream to be visually and ecologically improved after rehabilitation, and macrophyte establishment was generally considered positive or neutral.     

Direct and indirect effects of glaciers on aquatic biodiversity in high Andean peatlands

The rapid melting of glacier cover is one of the most obvious impacts of climate change on alpine ecosystems and biodiversity. Our understanding of the impact of a decrease in glacier runoff on aquatic biodiversity is currently based on the ‘glacier‐heterogeneity‐diversity’ paradigm, according to which there is high α‐diversity at intermediate levels of glacial influence due to the high degree of environmental heterogeneity caused by glacier water. This α‐diversity pattern generates high levels of between‐site aquatic community variation (high β diversity) and increases regional diversity (γ‐diversity). There is a rich conceptual background in favor of this paradigm, but empirical data supporting it are scarce. We investigated this paradigm by analyzing the different diversity patterns (α, β and γ‐diversity) of four aquatic groups (zooplankton, macroinvertebrates, algae and macrophytes) living in high‐elevation peatlands (>4500 m above sea level). We sampled 200 pools from 20 peatlands along a glacier gradient in the Cordillera Real of Bolivia. We performed structural equation modeling (SEM) to analyze the potential mechanisms underlying the observed diversity patterns. Intermediate levels of glacial influence (15–20% cover) resulted in high heterogeneity, but α‐diversity responded to glacial influence only for the zooplankton group (Cladocera). Our SEM analysis did not identify environmental heterogeneity as a significant variable explaining the relationship between glacier and α‐diversity. Peatland area had a strong positive effect on heterogeneity and diversity. β‐diversity was significantly associated with glacier gradient, and 12.9% of the total regional diversity (γ‐diversity) was restricted to peatlands with a high degree of glacial influence. These species might be lost in a context of glacial retreat. These findings provide new insight into the potential effects of glacial retreat on the aquatic environment and biodiversity in the peatlands of the tropical Andes.     

Elephant (Loxodonta africana) footprints as habitat for aquatic macroinvertebrate communities in Kibale National Park,south‐west Uganda

This is the first study where elephant footprints as habitat for aquatic macroinvertebrate communities were assessed. Preliminary observations during the dry season in Kibale Forest, Uganda, indicated that water‐filled footprints constituted the majority of stagnant ponds. Consequently, this study aimed at giving an overview of the diversity and ecology of those habitats and the capacity of elephants as ecosystem engineers. The fauna and abiotic factors (age, size, substrate, organic matter, pH, canopy cover, temperature, conductivity) of 30 water‐filled natural elephant footprints were sampled, resulting in the record of 61 morphospecies among 27 families/orders. Species composition was dominated by Hydrophilidae and Dytiscidae and influenced by environmental variables, such as age and organic matter. To study the colonization process, 18 artificial footprints were created within different distances from the water source. After 5 days, 410 specimens were collected, with higher species richness in artificial footprints closer to a natural water source. We conclude that colonization of water‐filled footprints is fast, they constitute important habitats with high diversity and variability, and they act as stepping stones for dispersal and add to the ability of elephants as ecosystem engineers. We emphasize the importance of elephants as a key species in ecosystem dynamics and conservation practice.     

增进城市地区生物多样性——以新加坡模式为例

自 1963 年以来,新加坡开展实施了绿化计划,并经历了从“花园城市”到“花园中的亲生态城市”的演变。为了在新加坡实现生物多样性保护,国家公园局制定了自然保护蓝图,重点介绍该规划实施的关键是利用技术创新。新加坡城市生物多样性指数是一种评价生物多样性成效的自我评估工具,已在全球范围内的多个城市得到应用。     

A comparison of the catchment sizes of rivers,streams, ponds,ditches and lakes: implications for protecting aquatic biodiversity in an agricultural landscape

In this study we compared the biodiversity of five waterbody types (ditches, lakes, ponds, rivers and streams) within an agricultural study area in lowland England to assess their relative contribution to the plant and macroinvertebrate species richness and rarity of the region. We used a Geographical Information System (GIS) to compare the catchment areas and landuse composition for each of these waterbody types to assess the feasibility of deintensifying land to levels identified in the literature as acceptable for aquatic biota. Ponds supported the highest number of species and had the highest index of species rarity across the study area. Catchment areas associated with the different waterbody types differed significantly, with rivers having the largest average catchment sizes and ponds the smallest. The important contribution made to regional aquatic biodiversity by small waterbodies and in particular ponds, combined with their characteristically small catchment areas, means that they are amongst the most valuable, and potentially amongst the easiest, of waterbody types to protect. Given the limited area of land that may be available for the protection of aquatic biodiversity in agricultural landscapes, the deintensification of such small catchments (which can be termed microcatchments) could be an important addition to the measures used to protect aquatic biodiversity, enabling ‘pockets’ of high aquatic biodiversity to occur within working agricultural landscapes. Guest editors: R. Céréghino, J. Biggs, B. Oertli & S. Declerck The ecology of European ponds: defining the characteristics of a neglected freshwater habitat     

城市湿地公园生物多样性设计与评估——以六盘水明湖国家湿地公园为例

由于中国城市化进程加快,湿地公园中的生物多样性也随之受到影响,科学合理的设计和评估生物多样性对城市中同类型的湿地公园建设或维护有着重要的参考价值。研究选取基于人工设计的贵州省六盘水明湖国家湿地公园为例,从生境多样性与物种多样性两个方面对生物多样性进行评估。得出以下结论:(1)公园生境单元类型较丰富,公园中面状、现状要素饱和度指数都超50%,生境多样性状况良好。(2)公园建成5年后场地内乔灌木植物的种类明显增多,其中丁香、香樟、蜡梅、榆树等植物成为新的优势种群,表现在园区的西部、南部与东部;草本水生植物种类也明显增多,优势种群结构并没有发生太大改变,集中表现在园区的西南部、南部与中部。(3)影响生物多样性变化的两大因素一是优势群落的自然演替恢复速度效果明显,二是人为干扰严重的地区生物多样性减少。