DNA sequences corroborate Soesiladeepakius as a non‐salticoid genus of jumping spiders: placement with lapsiines,phylogeny, and description of six new species (Araneae,Salticidae)

Species of the Amazonian jumping spider genus Soesiladeepakius Makhan are confirmed as non‐salticoids. Sequences of nuclear (28S, Actin) and mitochondrial (16S through NADH dehydrogenase subunit I, ‘16S‐ND1’) gene regions, analysed under parsimony and maximum likelihood, placed the genus within the lapsiines, closely related to Galianora Maddison. Additionally, six new species of this genus are herein described, namely Soesiladeepakius lyra sp. nov. , Soesiladeepakius retroversus sp. nov. , Soesiladeepakius arthrostylus sp. nov. , Soesiladeepakius gasnieri sp. nov. , Soesiladeepakius biarmatus sp. nov. , and Soesiladeepakius uncinatus sp. nov. , all from the Amazon region in Brazil. To test the monophyly of Soesiladeepakius within lapsiines, a cladistic analysis was carried out using a data matrix comprising 24 morphological characters scored for 12 taxa. The analysis resulted in two equally parsimonious trees of 29 steps. One of these trees is used to discuss the relationships among the species of Soesiladeepakius and character evolution. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 165 , 274–295.     

Fossil Dolphin Otekaikea marplesi (Latest Oligocene,New Zealand) Expands the Morphological and Taxonomic Diversity of Oligocene Cetaceans

The Oligocene Epoch was a time of major radiation of the Odontoceti (echolocating toothed whales, dolphins). Fossils reveal many odontocete lineages and considerable structural diversity, but whether the clades include some crown taxa or only archaic groups is contentious. The New Zealand fossil dolphin “Prosqualodon” marplesi (latest Oligocene, ≥23.9 Ma) is here identified as a crown odontocete that represents a new genus, Otekaikea, and adds to the generic diversity of Oligocene odontocetes. Otekaikea marplesi is known only from the holotype, which comprises a partial skeleton from the marine Otekaike Limestone of the Waitaki Valley. Otekaikea marplesi was about 2.5 m long; it had procumbent anterior teeth, and a broad dished face for the nasofacial muscles implicated in production of echolocation sounds. The prominent condyles and unfused cervical vertebrae suggest a flexible neck. A phylogenetic analysis based on morphological features places Otekaikea marplesi in the extinct group Waipatiidae, within the clade Platanistoidea. The phylogeny implies an Oligocene origin for the lineage now represented by the endangered Ganges River dolphin (Platanista gangetica), supporting an Oligocene history for the crown Odontoceti.     

New materials of Chalicotherium brevirostris (Perissodactyla,Chalicotheriidae) from the Tunggur Formation,Inner Mongolia

Chalicotherium brevirostris was named by Colbert based on a skull lacking mandibles from the late Middle Miocene Tunggur Formation, Tunggur, Inner Mongolia, China. Here we describe new mandibular materials collected from the same area. In contrast to previous expectations, the new mandibular materials show a long snout, long diastema, a three lower incisors and a canine. C. brevirostris shows some sexual dimorphism and intraspecific variation in morphologic characters. The new materials differ from previously described C. cf. brevirostris from Cixian County (Hebei Province) and the Tsaidam Basin, which may represent a different, new species close to C. brevirostris. The diagnosis of C. brevirostris is revised.     

Carex jianfengensis (Carex sect. Rhomboidales,Cyperaceae), a New Species from Hainan,China

A new species of Carex sect. Rhomboidales, C. jianfengensis, is described and illustrated from Hainan, China. The new species is similar to C. zunyiensis but differs in having involucral bracts sparsely hispid and with ca.1 cm long sheaths; inflorescence with 4 spikes, terminal spike ca. 2.5 cm long, lateral spikes 2–3.5 × 0.7–1 cm; staminate glumes narrowly ovate, ca. 5 mm; pistillate glumes triangular-lanceolate, 5–7 mm; perigynia 6–8 × 3 mm and pubescent on veins; nutlet 4–5 mm long, rhombic-ovoid, trigonous, base with shortly stipitate, apex abruptly contracted into a erect short beak, and not expanding into an annulate orifice.     

An illustrated key to the cuckoo wasps (Hymenoptera,Chrysididae) of the Nordic and Baltic countries,with description of a new species

The Chrysididae are a group of cleptoparasitic and parasitoid aculeate wasps with a large number of rare and endangered species. The taxonomy of this group has long been confusing due to the similarity of species and extensive intraspecific variation. We present for the first time a comprehensive dichotomous key for all 74 species found in the Nordic and Baltic countries. In addition to diagnostic characters, information on the distribution and biology of each species is also presented. A new species, Chrysis borealis Paukkunen, Ødegaard & Soon, sp. n. is described on the basis of specimens collected from Fennoscandia. Chrysis gracillima Förster, 1853 is recorded as new to the Nordic and Baltic countries.     

Description of Eucyclops tziscao sp. n., E. angeli sp. n., and a new record of E. festivus Lindberg, 1955 (Cyclopoida,Cyclopidae, Eucyclopinae) in Chiapas,Mexico

Two new species of the freshwater cyclopoid genera Eucyclops are described, Eucyclops tziscao sp. n. and E. angeli sp. n. Both species belong to the serrulatus-group defined by morphological features such as: the presence of distal spinules or hair-like setae (groups N1 and N2) on frontal surface of antennal basis; the fourth leg coxa with a strong inner spine that bears dense setules on inner side, yet proximally naked (large gap) on outer side; and a 12-segmented antennule with smooth hyaline membrane on the three distalmost segments. Eucyclops tziscao sp. n. is morphologically similar to E. bondi and E. conrowae but differs from these species in having a unique combination of characters, including a caudal ramus 4.05±0.25 times as long as wide, lateral seta of Enp3P4 modified as a strong, sclerotized blunt seta, coxal spine of fourth leg with inner spinule-like setules distally, and sixth leg of males bearing a strong and long inner spine 2.3 times longer than median seta. Eucyclops angeli sp. n. can be distinguished by an unique combination of morphological features: the short caudal ramus; the long spine on the sixth antennular segment of A1; the presence of one additional group of spinules (N12’) on the caudal surface of A2; the presence of long setae in females, or short spinules in males on the lateral margin of fourth prosomite; the strong ornamentation of the intercoxal sclerite of P4, specially group I modified as long denticles; the distal modified setae of Exp3P3 and Exp3P4 in females and males; and the short lateral seta of P5. Finally, we report on a new record of E. festivus in México, and add data on morphology of the species.     

In the shadow of a megalopolis,a new Flexamia from a threatened grass species in the New Jersey Pine Barrens (Hemiptera,Cicadellidae, Deltocephalinae,Paralimnini)

A previously unknown species of the North American leafhopper genus Flexamia, Flexamia whitcombi sp. n., is described from pinebarren smokegrass (Muhlenbergia torreyana (Schult.) Hitchc.), a state-listed threatened grass in the New Jersey Pine Barrens. The serrata species group, to which it belongs, is redefined and a key to the species of the group is provided. This is the first reported insect association with Muhlenbergia torreyana.     

中国荞麦属（蓼科）一新种——密毛野荞麦

描述了蓼科一新种——密毛野荞麦（Fagopyrum densovillosum J. L. Liu）,本种与细柄野荞麦（F. gracilipes(Hemsl.) Damm. et Diels）相近似,不同在于植株全体密被白色直立长毛,茎枝较粗壮,节较密集,节间较短, 叶较大,长（0.9～）1.7～6 cm,宽（0.7～）1.2～5.1 cm,阔卵形,心形,阔心形,阔卵状心形,卵形,长卵形,三角状卵形或卵状三角形,在上面具细皱纹,明显小泡状突起,叶柄较长,长 (0.5～) 2.6～7.5 cm,果实较小,长1.8～2.5 mm,直径1.5～2 mm,易于区别。     

Structure and function of Rv0130, a conserved hypothetical protein from Mycobacterium tuberculosis

A large fraction of the Mycobacterium tuberculosis genome codes for proteins of unknown function. We here report the structure of one of these proteins, Rv0130, solved to a resolution of 1.8 å. The Rv0130 monomer features a single hotdog fold composed of a highly curved β-sheet on top of a long and a short α-helix. Two monomers in turn pack to form a double-hotdog-folded homodimer, similar to a large group of enzymes that use thiol esters as substrates. Rv0130 was found to contain a highly conserved R-specific hydratase motif buried deeply between the two monomers. Our biochemical studies show that the protein is able to hydrate a short trans-2-enoyl-coenzyme A moiety with a k _cat of 1.1 × 10² sec⁻¹. The importance of the side chains of D40 and H45 for hydratase activity is demonstrated by site-directed mutagenesis. In contrast to many hotdog-folded proteins, a proline residue distorts the central helix of Rv0130. This distortion allows the creation of a long, curved tunnel, similar to the substrate-binding channels of long-chain eukaryotic hydratase 2 enzymes.     

New Middle Jurassic record of fern genus Eboracia (Dicksoniaceae,Filicales) and its spatio-temporal distribution in China

As an important component of the Mesozoic flora, the extinct fern genus Eboracia Thomas (Dicksoniaceae, Filicales) is widely reported in China with diverse fossil records. New material of Eboracia lobifolia, represented by a nearly intactly preserved fossil frond, is described herein from the Middle Jurassic Haifanggou Formation in Beipiao of western Liaoning, Northeast China. The frond is lanceolate in gross outline, at least 38.0 cm long, and can be divided into the basal sterile part, the upper fertile part and a transitional part in between. The new discovery confirms for the first time that the frond of E. lobifolia is hemidimorphic rather than holodimorphic. Many in-situ spores were detached from the sori of the fertile pinnae, which are characterized by rounded-tetrahedral shape, smooth surface, distinct border, and a wide, long triradiate crack almost reaching the equator. Comparing with dispersed spores in the same horizon, these in-situ spores seem to be most similar to Cyathidites minor Couper in morphology. A spatio-temporal analysis of Eboracia in China shows that Eboracia with totally four species occurred in a time interval ranging from the Late Triassic to the Early Cretaceous in China, and mostly flourished in the Middle Jurassic; the genus was widely distributed in both the Northern and Southern Phytofloristic Provinces of China, particularly in southern China during the Late Triassic to Early Jurassic, while more abundant and diverse in northern China during the Middle Jurassic to Early Cretaceous.     

A reappraisal of the Pleurotus eryngii complex – New species and taxonomic combinations based on the application of a polyphasic approach,and an identification key to Pleurotus taxa associated with Apiaceae plants

The Pleurotus eryngii species-complex comprises choice edible mushrooms growing on roots and lower stem residues of Apiaceae (umbellifers) plants. Material deriving from extensive sampling was studied by mating compatibility, morphological and ecological criteria, and through analysis of ITS1-5.8S-ITS2 and IGS1 rRNA sequences. Results revealed that P. eryngii sensu stricto forms a diverse and widely distributed aggregate composed of varieties elaeoselini, eryngii, ferulae, thapsiae, and tingitanus. Pleurotuseryngii subsp. tuoliensis comb. nov. is a phylogenetically sister group to the former growing only on various Ferula species in Asia. The existence of Pleurotusnebrodensis outside of Sicily (i.e., in Greece) is reported for the first time on the basis of molecular data, while P. nebrodensis subsp. fossulatus comb. nov. is a related Asiatic taxon associated with the same plant (Prangos ferulacea). Last, Pleurotusferulaginis sp. nov. grows on Ferulago campestris in northeast Italy, Slovenia and Hungary; it occupies a distinct phylogenetic position accompanied with significant differences in spore size and mating incompatibility versus other Pleurotus populations. Coevolution with umbellifers and host/substrate specificity seem to play key roles in speciation processes within this fungal group. An identification key to the nine Pleurotus taxa growing in association with Apiaceae plants is provided.     

Molecular Cloning and Characterization of GhGolS1, a Novel Gene Encoding Galactinol Synthase from Cotton (Gossypium hirsutum)

Galactinol synthase (GolS) is a key initial regulatory enzyme in the synthesis of raffinose family oligosaccharides (RFOs), sugars that play essential roles in plant growth and development. We have cloned the GhGolS1 gene (GenBank accession number: JF813792), which encodes the cotton GolS1 protein by rapid amplification of cDNA ends?Cpolymerase chain reaction (RACE?CPCR). The full-length cDNA is 1,729-bp long and encoded an open reading frame (ORF) of 343 amino acids with a deduced molecular weight of 39.2?kDa. The GhGolS1 protein shared 74?C78% identity at the amino acid level with GolS isolated from Ricinus communis, Populus trichocarpa, Solanum lycopersicum, Arabidopsis thaliana and Capsicum annuum. The corresponding genomic DNA, which contained three exons and two introns, was isolated and analyzed. The 5?? flanking region was also analyzed to identify a group of putative cis-acting elements. DNA gel blot analysis showed that in the cotton genome, the GhGolS gene family contains at least three members. Real-time PCR (RT-PCR) analysis revealed that GhGolS1 is expressed in cotton leaves, anthers and 35 DPA fibers, and its expression level in anthers is much higher than that in leaves and 35 DPA fibers. It was minimally expressed in other tissues. Additionally, the GhGolS1 protein was localized to the cell membrane. On the basis of these results, we propose that GhGolS1 has critical roles in cotton male fertility, fiber quality and seed development.     

Isolation and Characterization of a Bacteriophage Lytic for Desulfovibrio salexigens, a Salt-Requiring, Sulfate-Reducing Bacterium

A bacteriophage that lysed Desulfovibrio salexigens cells was isolated from marine sediments and preliminarily characterized by electron microscopy and electrophoretic analysis of structural proteins and genomic nucleic acid. The bacteriophage had an icosahedral head and a long flexible tail, and the buoyant density of the bacteriophage particles was 1.468 g/ml in cesium chloride. The particles consisted of a double-stranded DNA molecule about 33 kilobase pairs long and at least 11 structural proteins.     

New Early Eocene Basal tapiromorph from Southern China and Its Phylogenetic Implications

A new Early Eocene tapiromorph, Meridiolophus expansus gen. et sp. nov., from the Sanshui Basin, Guangdong Province, China, is described and discussed. It is the first reported Eocene mammal from the basin. The new taxon, represented by a left fragmentary mandible, is characterized by an expanded anterior symphyseal region, a long diastema between c1 and p1, a rather short diastema between p1 and p2, smaller premolars relative to molars, an incipient metaconid appressed to the protoconid on p3, a prominent entoconid on p4, molar metaconid not twinned, cristid obliqua extending mesially and slightly lingually from the hypoconid, inclined metalophid and hypolophid, and small hypoconulid on the lower preultimate molars. Meridiolophus is morphologically intermediate between basal Homogalax-like taxa and derived tapiromorphs (such as Heptodon). Phylogenetic analysis indicates Equidae is more closely related to Tapiromorpha than to Palaeotheriidae, although the latter is only represented by a single species Pachynolophus eulaliensis. ‘Isectolophidae’, with exception of Meridiolophus and Karagalax, has the closest affinity with Chalicotherioidea. Furthermore, the majority rule consensus tree shows that Meridiolophus is closer to Karagalax than to any other ‘isectolophid’, and both genera represent stem taxa to crown group Ceratomorpha.     

New internal standards for basic amino acid analyses

Eight derivatives of cysteine and penicillamine with 2- and 4-vinyl-pyridine, p-nitrobenzyl bromide, and p-nitrostyrene were evaluated as potential internal standards for the short and long (physiological) basic columns in amino acid analysis by ion-exchange chromatography. S-β-(4-pyridylethyl)-dl-penicillamine (4-PEP) was found to have an advantage over the previously proposed S-β-(4-pyridylethyl)-l-cysteine (4-PEC) since the elution position of 4-PEP on the short basic column is insensitive to minor changes in pH of the eluting citrate buffer. 4-PEP was found to be stable to acid hydrolysis as used for proteins and its recovery from protein hydrolysates was unaffected by the presence of starch during hydrolysis. However, an extra 14 min is required to elute 4-PEP on the short column.Of the eight compounds studied, six appcar suitable as internal standards on the physiological (long) column. These elute in widely differing positions between histidine and arginine, thus offering a choice of internal standards for special analysis on the basic long column.     

Characterization ofGandalf,a new inverted-repeat transposable element ofDrosophila koepferae

The cloning and characterization ofGandalf, a new DNA-transposing mobile element obtained from theDrosophila koepferae (repleta group) genome is described. A fragment ofGandalf was found in a middle repetitive clone that shows variable chromosomal localization. Restriction, Southern blot, PCR and sequencing analyses have shown that mostGandalf copies are about 1 kb long, are flanked by 12 by inverted terminal repeats and contain subterminal repetitive regions on both sides of the element. As with other elements of the DNA-transposing type (known as the ‘Ac family’), theGandalf element generates 8 by direct duplications at the insertion point. Coding region analysis has shown that the longer open reading frame found inGandalf copies could encode part of a protein. However, whether or not the 1 kb copies of the element are actually the active transposons remains to be elucidated.Gandalf shows a very low copy number inD. buzzatii, a sibling species ofD. koepferae. An attempt to induce interspecific hybrid dysgenesis in hybrids of these two species has been unsuccessful.