粉末X射线衍射图谱计算植物淀粉结晶度方法的探讨

植物淀粉有A-型、B-型和C-型3种晶体。以水稻(Oryza sativa)、马铃薯(Solanum tuberosum)、豌豆(Pisum sativum) 和莲藕(Nelumbo nucifera)淀粉为材料, 利用粉末X-射线衍射仪(XRD)调查了不同晶体类型淀粉的波谱特征, 探讨XRD波谱相对结晶度的计算方法。软件峰拟合法、软件曲线法、直线作图法和曲线作图法均可用于计算淀粉XRD波谱的相对结晶度, 以曲线作图法计算结果较为可靠。利用曲线作图法得出的结果表明, 稻米淀粉的结晶度与直链淀粉含量呈显著线性负相关, 酸解莲藕淀粉的结晶度与淀粉酸水解度呈显著线性正相关。酸水解使莲藕淀粉的C-型晶体转变为A-型晶体。上述研究结果为利用XRD分析植物淀粉晶体类型和计算相对结晶度提供了重要参考。     

谷物籽粒淀粉研究进展

谷物籽粒是人类最基本的粮食,其胚乳淀粉与品质有密切的关系.本文就谷物胚乳淀粉的合成积累过程、谷物淀粉合成酶的作用与特性、淀粉特性与品质的关系以及基因工程在改良作物淀粉品质方面的研究进展进行了综述,并对谷物籽粒淀粉进一步的研究提出了展望,为谷物淀粉品质育种提供参考.     

Submicroscopic Structure of the Cereal Starch Grain

The submicroscopic structure of the starch grains of Zea maysand Triticum sativum was studied electron-optically from replicasmade of internal, fracture surfaces. In corn starch, long cylindricalmicrofibrils were found, arranged in a radial direction andimbedded in an amorphous matrix. Their diameter was uniformlyabout 200 Å. Microfibrils were also indicated in wheatstarch because of the prominence of their ends in surface view.Many microfibrils in corn starch appeared to be helically coiled.The more ordered starch substance was presumed to be localizedprincipally in the microfibrils.     

Structural Analysis of Sydowic Acid by X-ray Diffraction

Streptomyces sp. No. 280 produced several kinds of amylase inhibitors (amylase inhibitor A, B, B' and C). Two amylase inhibitors (designated as AI-A₁ and AI-A₂) were obtained from an amylase inhibitor A fraction by paper chromatography. AI-A₁ inhibited muscle phosphorylase a much more than AI-A₂ and was hydrolyzed by sweet potato β-amylase whereas AI-A₂ was not. Both amylase inhibitors had a carbohydrate and were hydrolyzed by some kinds of amylases or acids. They lost their inhibitory activity against phosphorylase a after treatment with acids or hog pancreatic α-amylase, but they showed increased inhibitory activity toward porcine small intestinal sucrase.

Both AI-A₁ and AI-A₂ were composed of glucose and a basic moiety which gave a positive ninhydrin reaction. The molecular weights of AI-A₁ and AI-A₂ were estimated to be approximately 1300 ? 1500 by gel filtration on a Sephadex G-15 column. The nitrogen content of the amylase inhibitors was found to be about 1.3% by elementary analysis     

Determining the Cellular Structure of Two Cereal Food Foams by X-ray Micro-Tomography

The cellular structure of two products, an extruded breakfast cereal and a short dough biscuit, was characterized by two different X-ray micro computed tomographic systems. Acquisitions were made by a compact desktop system Skyscan 1174 (Bruker μCT, Belgium) and at the European Synchrotron Radiation Facility (ESRF, beamline ID19, France) at different resolutions (voxel size of 6.5 μm, 7.5 μm, 16.2 μm and 25.8 μm). 3D images were processed for the density, the connectivity index and the granulometry of cells and cell walls. These experiments underlined the importance of the resolution for determination of quantitative measurements such as densities and thicknesses. The median width calculated for the cell walls distribution in the biscuit dropped from 141 to 50 μm when the voxel size changed from 25.8 to 7.5 μm. Images well showed that even though the food products had close values of porosity 0.6 and 0.7 for biscuit and extruded breakfast cereal respectively, their cellular structures were very different. The biscuit had small cells (median value of the distribution varied from 125 to 152 μm, according to resolution) and larger cell walls (50–141 μm) than the extrudate (32–109 μm) which, on the contrary, exhibited very large cells (307–400 μm). Beyond methodological issues, these differences could be clearly attributed to the differences of compositions and processes.     

Cation-selective Pathway of OmpF Porin Revealed by Anomalous X-ray Diffraction

The OmpF porin from the Escherichia coli outer membrane folds into a trimer of β-barrels, each forming a wide aqueous pore allowing the passage of ions and small solutes. A long loop (L3) carrying multiple acidic residues folds into the β-barrel pore to form a narrow “constriction zone”. A strong and highly conserved charge asymmetry is observed at the constriction zone, with multiple basic residues attached to the wall of the β-barrel (Lys16, Arg42, Arg82 and Arg132) on one side, and multiple acidic residues of L3 (Asp107, Asp113, Glu117, Asp121, Asp126, Asp127) on the other side. Several computational studies have suggested that a strong transverse electric field could exist at the constriction zone as a result of such charge asymmetry, giving rise to separate permeation pathways for cations and anions. To examine this question, OmpF was expressed, purified and crystallized in the P6₃ space group and two different data sets were obtained at 2.6 Å and 3.0 Å resolution with K⁺ and Rb⁺, respectively. The Rb⁺-soaked crystals were collected at the rubidium anomalous wavelength of 0.8149 Å and cation positions were determined. A PEG molecule was observed in the pore region for both the K⁺ and Rb⁺-soaked crystals, where it interacts with loop L3. The results reveal the separate pathways of anions and cations across the constriction zone of the OmpF pore.     

Quick Shear-Flow Alignment of Biological Filaments for X-ray Fiber Diffraction Facilitated by Methylcellulose

X-ray fiber diffraction is one of the most useful methods for examining the structural details of live biological filaments under physiological conditions. To investigate biologically active or labile materials, it is crucial to finish fiber alignment within seconds before diffraction analysis. However, the conventional methods, e.g., magnetic field alignment and low-speed centrifugations, are time-consuming and not very useful for such purposes. Here, we introduce a new alignment method using a rheometer with two parallel disks, which was applied to observe fiber diffractions of axonemes, tobacco mosaic tobamovirus, and microtubules. We found that fibers were aligned within 5 s by giving high shear flow (1000-5000 s⁻¹) to the medium and that methylcellulose contained in the medium (∼1%) was essential to the accomplishment of uniform orientation with a small angular deviation (<5°). The new alignment method enabled us to execute structure analyses of axonemes by small-angle x-ray diffraction. Since this method was also useful for the quick alignment of purified microtubules, as well as tobacco mosaic tobamovirus, we expect that we can apply it to the structural analysis of many other biological filaments.     

The X-ray Diffraction Pattern of Spores of Bacillus subtilis

ORD and CD of d(+) pantothenic acid, d(+) pantothenyl alcohol and d(?) pantolactone were studied. The acid and the alcohol gave positive Cotton effects with a peak at 227 and 225 mμ, respectively, and the lactone gave a negative Cotton effect with trough at 233 mμ. They gave CD maxima at 214, 213 and 219 mµ corresponding to the inflection points of their ORD curves.

The concentrations were found to be linear to the rotation angles and the possibility of the application to quantitative analysis of the ORD was cited. The ORD showed the quantitative formation of the lactone by acid treatment of the vitamins without any racemization and hence the determination via lactone was suggested.     

Transformation of Chlorites by Primary Biological Agents—A Synthesis of X-ray Diffraction Studies

Chlorites in the bio interaction zone (or rhizosphere soils) are transformed by bacteria, fungi and mosses into expanding 2:1 minerals with different cation fixation capacities. Some of the new clays are smectitic, expanding with glycol treatment in the Ca-saturated state, while others have a high intensity 001 peak unchanged by glycol treatment. Most of all, potassium saturation results in different hydration states in mixed layered phases or as individual illitic units or minerals indicating dissimilarity in charge site and intensity on the 2:1 layers of the original chlorites. However, the overall pattern is that of the transformation of high temperature chlorite to expanding clay minerals with high exchange capacities. Biotic processes appear to modify chlorites in a rather homogeneous manner compared to the formation of interstratified minerals common in the water-rock interaction pathway. These high charge expanding clays left after the biologically mediated reactions with chlorites are strong potential sites for cation (e.g., magnesium and potassium) capture and storage to supply the nutritional requirements of plants and organisms.     

Quantitative Determination of Hydrate Content of Theophylline Powder by Chemometric X-ray Powder Diffraction Analysis

The purpose of this study was to establish a calibration model to predict the hydrate content in powder materials consisting of anhydrate (theophylline anhydrate (THA)) and theophylline monohydrate (THM) by using various kinds of X-ray powder diffraction (XRPD) analytical methods. XRPD profiles were measured five times each for 11 standard samples containing of THA and THM. THM content in the standard samples was evaluated based on XRPD profiles by the diffraction peak height and area methods, and the Wakelin’s and principal component regression (PCR) methods, respectively. Since THA and THM were cube- and rod-shaped particles, the standard samples consisted of THA and THM showed crystal orientation due to THM crystal shape. THA showed reproducible XRPD profiles, but THM showed fluctuating intensities in some specific peaks in the profiles. The linear calibration models were evaluated based on calibration XRPD datasets of the standard materials by various methods. In the result based on validation XRPD datasets, the order of the mean bias and the mean accuracy were peak height > peak area > Wakelin’s > PCR, indicating that PCR was the best method to correct sample crystal orientation. The effectiveness of the PCR method in construction of calibration models was discussed by a scientific approach based on regression vectors.     

Recent X-ray Diffraction and Electron Microscope Studies of Striated Muscle

The sliding filament model for muscular contraction supposes that an appropriately directed force is developed between the actin and myosin filaments by some process in which the cross-bridges are involved. The cross-bridges between the filaments are believed to represent the parts of the myosin molecules which possess the active sites for ATPase activity and actin-binding ability, and project out sidewise from the backbone of the thick filaments. The arrangement of the cross-bridges is now being studied by improved low-angle X-ray diffraction techniques, which show that in a resting muscle, they are arranged approximately but not exactly in a helical pattern, and that there are other structural features of the thick filaments which give rise to additional long periodicities shown up by the X-ray diagram. The actin filaments also contain helically arranged subunits, and both the subunit repeat and the helical repeat are different from those in the myosin filaments. Diffraction diagrams can be obtained from muscles in rigor (when permanent attachment of the cross-bridges to the actin subunits takes place) and now, taking advantage of the great increase in the speed of recording, from actively contracting muscles. These show that changes in the arrangement of the cross-bridges are produced under both these conditions and are no doubt associated in contraction with the development of force. Thus configurational changes of the myosin component in muscle have been demonstrated: these take place without any significant over-all change in the length of the filaments.     

碱醇处理的木薯淀粉结晶结构的变化

木薯淀粉在一定温度下用乙醇和碱的混合液处理,用HCl中和,醇洗,最后在50℃左右的烘箱中干燥6h,X射线衍射结果表明经碱醇处理的木薯淀粉其微晶、亚微晶、非晶的组成发生了变化。不同的处理条件,结晶组成的变化不同。较低浓度的醇,较高浓度的碱或较高反应温度得到非晶化程度高一些的淀粉。在偏光显微镜下观察到较少的偏光十字,表明淀粉的结晶结构发生了变化。     

Microbeam X-ray Diffraction Study of Granular Crystals Formed in Water-in-Oil Emulsion

Margarine and fat spread contain typical water-in-oil emulsions, including semi-solid fats, as continuous oil phases. The application of palm oil, one of the most promising trans-fat alternatives, for semi-solid fats is increasing. However, granular crystals often occur in palm-oil-based solid fats and cause deterioration. In this study, we carried out differential scanning calorimetry (DSC), optical microscopy, and X-ray diffraction (XRD) experiments on granular crystals in margarine. A conventional laboratory-scale technique was applied to examine thermal properties of high-melting fat fractions in granular crystals. In addition, microstructures of the granular crystal were precisely observed with a synchrotron radiation small-angle XRD (SR-μ-SAXD) technique by using a microbeam having a cross section of 5 × 5 μm². The following results were obtained. (1) DSC indicated that granular crystals are composed of high-melting fractions having a melting temperature of 23 °C. (2) Conventional XRD of granular crystals indicated that β-fat crystals of a triple chain length structure (β-3) melted below the melting of β′-fat of a double chain length structure (β′-2). (3) SR-μ-SAXD indicated that the fat crystals in normal margarine were β′-2. However, the fat crystals of the double and triple chain length structures were simultaneously observed at the center region of a granular crystal, whereas only the fat crystals of β-3 were observed at the outer region of a granular crystal. We analyzed the microstructures and formation processes of granular crystals in relation to the fractional crystallization of the β form of 1,3-dipalmitoyl-2-oleoyl-sn-glycerol promoted by crystallization and transformation of tripalmitin and tristearin fractions.     

X-ray Diffraction Studies of Cell Walls and Peptidoglycans from Gram-positive Bacteria

THE cell walls of Gram-positive bacteria consist principally of a water-insoluble polymer and peptidoglycan (synonyms, murein, mucopeptide, glycosaminopeptide), which in some cases accounts for as much as 90% of the cell wall. After other components (teichoic acid, teichuronic acid, polysaccharide or protein) have been gently removed from the cell walls, peptidoglycan remains as a cell-shaped structure at least 100 Å thick. We report here results of X-ray diffraction observations on whole cell walls and peptidoglycans of Staphylococcus aureus, Bacillus licheniformis and Micrococcus lysodeikticus. Chemical data shows that all the muramic acid residues in the glycan chains of the peptidoglycan of S. aureus are substituted with the peptide L Ala-D GluNH₂-L Lys-D Ala and that there is extensive cross linking by pentaglycine bridges between peptides on adjacent glycan chains^1,3. Such a peptidoglycan might be expected to have an ordered crystalline structure. On the contrary, peptidoglycans of the bacilli, in which the cross linking between peptides is direct and considerably less^4,5 might be expected to have a less ordered structure. The mode of packing of the glycan and peptide moieties has been considered by Kelemen and Rogers⁶. When the glycan chains are stacked in pairs, as in the analogous polysaccharide chitin⁷, the muramic acid residues are orientated in such a way as to allow a three-dimensional structure to be built. If the bulk of the peptides are then arranged in a pseudo β configuration, calculations show that the expected dimensions of the cell wall calculated from the model are of the right order and also such a model allows for the existence of extensive stabilizing hydrogen bonds between adjacent peptide chains.     

X-ray Diffraction Study of a New Crystal Form of Yeast Phenylalanine tRNA

IN our continuing studies on the crystallography of tRNA¹ we have obtained a new crystal form of phenylalanine tRNA from baker's yeast. The crystals show particularly good stability to X-ray irradiation, lasting generally for about 100 h in the X-ray beam. Most importantly they produce reflexions which extend out to a resolution of about 3.0 Å. The crystals belong to the monoclinic system, space group P2i with two molecules of tRNA per unit cell (Table 1). Thus, there is only one molecule per asymmetric unit of structure. The unit cell dimensions (a=56.0, b=33.4, c=63.0 and β=90.9°) are the smallest yet reported for tRNA and place stringent constraints on the possible dimensions of the tRNA molecule.     

Conformations Consistent with Charge Migration Observed in DNA and RNA X-ray Structures

Abstract

Electron holes are known to migrate along the DNA or RNA duplexes and to localize preferentially on successive guanines. The stationary point conformations of Gua pairs that can trap or let pass these holes have been characterized by quantum chemistry calculations. Here we show their recurrent occurrence in DNA and RNA X-ray structures, often in quadruplex conformations or in interaction with proteins, ligands or metal ions. These findings give support to the biological, possibly regulatory, roles of charge migration in cell functioning.