Bird Species Sensitivity in a Fragmented Landscape of the Atlantic Forest in Southern Brazil1

I tested whether terrestrial/understory habits, large body sizes, low tolerance to edge or to matrix habitat, and food/habitat specialization are characteristics of the most vulnerable bird species based on point counts conducted in 14 forest fragments in northern Paraná, southern region of the Brazilian Atlantic forest. In addition, the sensitivity level of each bird species to forest fragmentation in northern Paraná (high, medium, and low) was compared to the Viçosa region, another fragmented landscape of the Atlantic forest. Contrary to expectations, large body size and terrestrial/understory habits were not features clearly related to high sensitivity to forest fragmentation; but species with tolerance to edge did have lower sensitivity. I found also that specialized habitat/food were not good predictors of extinctions; the most specialized guilds, bamboo and vine‐tangle insectivores and trunk and twig insectivores, had a high number of species with low sensitivity. Patterns of sensitivity were compared for 75 bird species that occurred in both northern Paraná and Viçosa; higher incongruence occurred for 14 and 7 species considered as highly sensitive in Viçosa but were of medium or low sensitivity, respectively, in northern Paraná. These differences may occur because sensitivity to habitat fragmentation may vary from the center to the periphery of a species' geographic range. Geographic variation in patterns of sensitivity to forest fragmentation may be important for conservation planning.     

The Politics of Mediation: Local–Global Interactions in the Central Amazon of Brazil

The proliferation of a nongovernmental sector held the promise of linking local actors with national and international ones, thereby contributing to a highly participatory, Habermasian ideal in which the formerly marginalized would find greater participation and expression. Yet the role of international agents in community-based resource management projects has recently come under scrutiny. In addressing these issues in this article, I consider the roles of different interlocutors in two contrastive phases in an Amazonian community's movement to preserve its endangered fisheries. The comparative exercise demonstrates how institutional agents, by establishing a discourse that structures the criteria through which collective demands may be problematized, may inadvertently shift from mediation to domination, and from local partnering to local production.     

Litter manipulation and associated invertebrate fauna in secondary forest, central Amazonia, Brazil

Plant litter from selected tree species has been used for improving soil productivity in low-input systems of secondary vegetation in Central Amazon, leading to different conditions for invertebrates. Soil invertebrate assemblages were monitored to test the effects of adding litter types of contrasting nutritional quality and periods of exposure on the development of the community. We established four second growth plots with 80 subplots of 3 m² from which the original litter was removed and replaced in 60 subplots. Twenty subplots received Hevea brasiliensis leaves, 20 others Carapa guianensis leaves, and another 20 an equal mixture of H. brasiliensis, C. guianensis and Vismia guianensis. Twenty subplots were left with the original litter. Litter and mineral soil (5 cm deep) sub-horizons were collected after 45, 100, 160, 240 and 300 days of exposure. The invertebrates were extracted using Kempson apparatus. At the day 210, the litter was replenished to match the surrounding litter. Regression analyses showed no significant effect of litter type, but the period of exposure did affect the community in both sub-horizons. Only after the litter replenishment, the type of litter and periods of exposure affected the community in the litter sub-horizon. Because we tried to isolate the effects of litter composition from other large-scale phenomena, several factors interfered in the experiment and potential problems were identified to optimize the investigation. The sampling design must be improved by using a larger number of subsamples for each kind of litter within each plot. Coarse parameters of Order and Family were suited to detect major environmental patterns on soil invertebrates, but taxonomic resolution to species and/or morphospecies is required to detect more subtle effects. Future manipulations should also be done on a longer time scale, and the replicates need to be spread over larger areas to capture the natural variations within the ecosystems.     

东洞庭湖湿地鸟类群落结构及其多样性

2004年5月—2007年2月对东洞庭湖湿地鸟类资源进行了调查,共记录鸟类297种,隶属17目52科150属,其中古北界鸟类144种(另新北界鸟类2种),东洋界鸟类92种,广布种鸟类59种。冬候鸟或旅鸟166种,留鸟81种,夏候鸟50种。该湿地有国家I级重点保护鸟类7种、II级重点保护鸟类40种,国际湿地公约名录中的鸟类34种。东洞庭湖水禽资源尤为丰富,其种类和数量具明显季节性变化,全年水鸟种类和数量均是冬季较多,夏季较少。东洞庭湖生境多样化程度较高,退田还湖后湖面扩大、食源充足,鸟类的多样性指数(4.40)较高,远高于省内陆地环境和国内的湿地;但均匀性指数(0.54)均较其低,这与湿地环境及东洞庭湖湿地鸟类受到人类因素的干扰有关。     

Complete genome of a dengue virus serotype 4 strain from Amazonas, Brazil

Dengue virus (DENV) infections represent a significant concern for public health worldwide, being considered as the most prevalent arthropod-borne virus regarding the number of reported cases. In this study, we report the complete genome sequencing of a DENV serotype 4 isolate, genotype II, obtained in the city of Manaus, directly from the serum sample, applying Ion Torrent sequencing technology. The use of a massive sequencing technology allowed the detection of two variable sites, one in the coding region for the viral envelope protein and the other in the nonstructural 1 coding region within viral populations.     

Community of parasites in Triportheus curtus and Triportheus angulatus (Characidae) from a tributary of the Amazon River system (Brazil)

The present study compared the community of parasites in populations of Triportheus angulatus and T. curtus from a tributary of the Amazon River in northern Brazil. All hosts had one or more parasite species, 862,687 parasites were collected from T. curtus and 302,008 from T. angulatus. Species richness of parasites, Shannon diversity index and evenness index were higher for T. angulatus. The parasite communities of both hosts was similar (99%) and composed by Ichthyophthirius multifiliis, Anacanthorus pitophallus, metacercariae and Procamallanus (Spirocamallanus) inopinatus, with dominance of I. multifiliis. However, low infection level by Piscinodinium pilullare, Dolops sp. and Contracaecum larvae occurred only in T. angulatus, and Spironucleus sp. was found only in T. curtus. There were differences in the prevalence, intensity and mean abundance for some parasites of both hosts. There was aggregated dispersion of parasites in both hosts, but the infection of P. (S.) inopinatus in T. angulatus showed a random dispersion. For T. angulatus and T. curtus, the diversity and abundance of parasites were influenced by the host size. This was the first report of these parasite species for T. curtus, as well as of I. multifiliis, P. pilullare, Dolops sp., P. (S.) inopinatus and Contracecum sp. for T. angulatus.     

Food Sources of the Teleost Eucinostomus argenteus in Two Coastal Lagoons of Brazil

Eucinostomus argenteus is widely distributed along the Brazilian coast where it enters bays and lagoons. Imboacica and Cabiúnas are small coastal lagoons located in the southeastern coast of Brazil and in both localities E. argenteus is considered as a constant species. The diet of specimens collected between July 1991 through April 1993 was analysed by frequency of occurrence, numeric and volumetric methods. The predominant items ingested differed in each lagoon. In Imboacica lagoon, the stomach content comprised mainly of algae, polychaeta, detritus and sand particles, however in Cabiúnas lagoon calanoid copepods and shrimp larvae. Distinct features of the aquatic communities of the lagoons are discussed as possible causes for the differences observed.     

Floristic relationships of the woody component in rocky outcrops savanna areas in Central Brazil

Rocky outcrops usually have a peculiar vegetation which differs from that of the surrounding vegetation matrix. In Brazil, a savanna type (cerrado rupestre) is particularly characterized by rocky outcrops and is one of eleven vegetation types which occur throughout Cerrado biome. It has been scarcely studied in detail. Therefore, the aim of this study was to investigate the phytogeographical patterns of the woody species in ten areas of the rocky outcrop savanna in the Brazilian Central Plateau. The difference in spatial distribution of the species was assessed through indicator species and CCA ordination analyses. Ten indicator species showed significantly different distribution. The first axis of the ordination showed association with the edaphic gradient, based on maximum temperature, pH and physical properties of the soils (eigenvalue 0.63). The second axis showed an eigenvalue 0.46, associated with poor rainfall and land declivity. It appears that the woody flora of the rocky outcrop savanna areas of the Brazilian Central Plateau is relatively homogeneous, with low β diversity. Apparently, the size of the woody species populations is what distinguishes the ten investigated areas. Therefore, initiatives and actions for the Cerrado biome conservation must consider not only the size of the protected areas but also that of the populations to be protected, especially the woody species on rocky outcrops.     

Deep-sea pelagic ichthyonekton diversity in the Atlantic Ocean and the adjacent sector of the Southern Ocean

Aim Deep‐sea pelagic diversity is poorly understood. Local (SL) and regional (SR) ichthyonekton species richness are presented and analysed with respect to local and regional environmental factors, and biogeographical processes. Location Sixty‐six stations from the Atlantic Ocean and adjacent sector of the Southern Ocean, 65° N to 57° S. Methods Estimation of SL by means of rarefaction. Stepwise evaluation of SL and SR relationships by means of the second‐order corrected Akaike information criterion (AICc) after locally weighted scatterplot smoothing (LOESS) and linear fitting, analysis of saturation effects by means of slopes of species accumulation curves (log–log plots). Results Latitudinal gradients were present for SL and SR, and were asymmetric between the Northern and Southern hemispheres. Relatively low species richness was encountered for the Southern Ocean. Asymmetry at the regional level by means of higher SR was attributed to area effects in the South Atlantic. Log–log plots indicated saturation of local assemblages and dependence on environmental factors. SL was related to productivity; this relationship was hump‐shaped. SR was positively related to area size and negatively to seasonality of production. Biogeographical effects were indicated in that SR peaks coincided with overlap zones of boreal and tropical faunas as a consequence of historical faunal exchange processes. Main conclusions The stepwise approach allowed for distinction between effects of area size, productivity and biogeographical processes on diversity at local and regional scales. Productivity in particular is important in two ways. At the local scale, the link of productivity to SL is explained by a successional‐functional hypothesis of resource utilization, whereas the seasonality effect for SR reinforces the hypothesis of dependence of deep‐sea fishes on seasonality of production through changes of life‐history traits. The causes of low Antarctic faunal diversity remained unresolved.     

Effects of spatial fragmentation on the elevational distribution of bird diversity in a mountain adjacent to urban areas

The biodiversity in mountainous ecosystems is high but is threatened by rapid environmental change. Urbanization and other anthropogenic factors in the mountains can affect land use and spatial fragmentation. Moreover, patterns of habitat are closely related to elevation and have a major effect on montane biodiversity. The aim of this study was to analyze the effects of spatial fragmentation on the vertical distribution pattern of bird diversity by characterizing the structure of the bird community, species diversity, and landscape factors at different altitudes. From 2016 to 2019, this study made a four years of continuous monitoring of the breeding birds. The result indicated that Mount Tai harbored a high bird diversity. Bird richness, abundance, and Shannon‐Wiener index decreased with latitude in Mount Tai monotonically. Moreover, the structure of bird communities varied along altitudinal gradients, and some special species were supported in different elevational bands due to the environmental filtering. Road density, number of habitat patches, patch density, and the percentage of forest were significantly related to bird diversity. Sufficient habitat and more patches in the low‐mountain belt supported higher bird diversity. The middle‐mountain belt and high‐mountain belt showed contrasting patterns. Our results highlight the effects of on‐going urbanization and human activities on montane biodiversity and emphasize the need for artificial habitats in the mountains to be managed.     

水盐梯度下荒漠植物多样性格局及其与土壤环境的关系

植物多样性格局作为生物多样性维持的一个重要方面可揭示群落构建的信息,反映物种对环境的适应性。结合样带调查和实验分析的方法,研究新疆艾比湖湿地自然保护区内水盐梯度下荒漠植物多样性格局及其与土壤环境因子间关系。结果表明:(1)高、低水盐样地(SW1,SW2)土壤容积含水量(SVWC)和电导率(EC)分别为16.65%和12.02 m S/cm及2.63%和1.91m S/cm,水盐变化主要影响草本和部分灌木群落的植物组成;(2)高水盐生境下植物群落无明显趋势性分布,低水盐生境下植物种依水盐和营养元素呈区域性分布。(3)高水盐生境下荒漠植物的多度分布呈对数正态模型,低水盐条件下符合Zipf模型,多度分布的变化反映了群落组成结构的水盐梯度响应;(4)SW1样地多样性总体显著高于SW2样地,土壤p H、SVWC和硫(S)对植物多样性有不同程度的极显著影响。综上可知,荒漠植物分布及多样性格局与土壤环境间关系呈一定的水盐梯度响应规律,本研究可为该地区植被恢复和土壤盐渍化治理提供科学依据。     

Population and Land Use Effects on Malaria Prevalence in the Southern Brazilian Amazon

Malaria prevalence has been one of the most dramatic outcomes of the occupation of the Brazilian Amazon as exemplified by Northern Mato Grosso, one of the areas of highest malaria prevalence in the Americas in the early 1990s. This paper associates the dynamicsof high malaria prevalence in Northern Mato Grosso with three land uses—small-scalegold mining (garimpos), agricultural colonization/cattle ranching (rural), and urban activities—and their related population characteristics, which constitute riskprofiles. Furthermore, spatial proximity and population mobility between (a) garimpos and new rural settlements and (b) older rural settlements or urban areas are key factors explaining malaria diffusion throughout the region. The paper identifies and characterizes populations at high malaria risk and the effects of land use types on malaria diffusion, providing policymakers with information for regional and local policies to control malaria and minimize its effects on Amazonian populations.     

Introduction of the African Catfish Clarias gariepinus (BURCHELL, 1822) into Southern Brazil

We record here the introduction of the African catfish Clarias gariepinus into the Guaraguaçu River basin in Paraná State, Brazil, an area with an extremely rich endemic fish fauna, including many catfishes. C. gariepinus was introduced as escapees from ponds built for recreational angling. These catfishes are very large and hard predators, thus posing serious potential for impact on the native fish fauna. The impact of C. gariepinus needs study with emphasis on finding means for controlling its spread.     

Allelic frequencies and statistical data obtained from 12 codis STR loci in an admixed population of the Brazilian Amazon

The allelic frequencies of 12 short tandem repeat loci were obtained from a sample of 307 unrelated individuals living in Macapá, a city in the northern Amazon region, Brazil. These loci are the most commonly used in forensics and paternity testing. Based on the allele frequency obtained for the population of Macapá, we estimated an interethnic admixture for the three parental groups (European, Native American and African) of, respectively, 46%, 35% and 19%. Comparing these allele frequencies with those of other Brazilian populations and of the Iberian Peninsula population, no significant distances were observed. The interpopulation genetic distances (F(ST) coefficients) to the present database ranged from F(ST) = 0.0016 between Macapá and Belém to F(ST) = 0.0036 between Macapá and the Iberian Peninsula.     

Ecological and historical determinants of population genetic structure and diversity in the Mediterranean shrub Rosmarinus officinalis (Lamiaceae)

Population genetic studies of widespread Mediterranean shrubs are scarce compared with those of trees and narrow endemics or studies from phylogeographical perspectives, despite the key role these species may play in Mediterranean ecosystems. Knowledge on the effect of ecological factors in shaping their genetic patterns is also limited. In this study we investigate genetic diversity and population structure across 18 populations of Rosmarinus officinalis, a Mediterranean shrubland plant. Populations were sampled along two elevational gradients, one each on calcareous and siliceous soils in a mountain system in the eastern Iberian Peninsula, to decipher the effect of ecological factors on the genetic diversity and structure based on 11 microsatellite loci. We found overall high levels of genetic diversity and weak population structure. Genetic diversity increased with elevation, whereas population differentiation was stronger among populations growing on siliceous soils. The nested analysis of elevational gradients within soil types revealed that these general patterns were mostly driven by siliceous populations, whereas calcareous populations were more homogeneous along elevational belts. Bayesian analysis of population structure revealed genetic membership of lowland and high‐elevation populations to different genetic clusters and a higher admixture of intermediate‐elevation populations to both clusters. High‐elevation populations were less differentiated from a hypothetical ancestral cluster, suggesting the persistence of their gene pool during the Pleistocene glaciations. In contrast, lowland populations resulted from more recent divergence. We propose that life‐history and reproductive traits mostly contribute to explain the high levels of genetic diversity and weak population structure, whereas ecological and historical factors mostly contribute to the stronger differentiation of siliceous populations and a rapid expansion of R. officinalis on calcareous soils possibly mediated by human landscape transformations, © 2015 The Linnean Society of London, Botanical Journal of the Linnean Society, 2016, 180 , 50–63.     

Soil and vegetation features determine the nested pattern of ant–plant networks in a tropical rainforest

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Soil databases and the problem of establishing regional biogeochemical trends

Regional and global environmental modeling depend on soil data for input layers or parameterization. However, randomly located observations, such as provided by agricultural databases, are not always representative of trends identified in field studies conducted under carefully controlled conditions. Many researchers lament the paucity of soil profile data in Amazônia, and suggest that given more data, regional studies would more closely approximate field research results. We assess the ability of a well‐populated regional database collected in the southwestern Brazilian Amazon to reproduce expected biogeochemical trends associated with forest clearing and pasture establishment, and explore the ramifications of relying on independently collected soil data for regional modeling. The Soteron database includes analyses of approximately 3000 soil cores collected for zoning purposes in the state of Rondônia. Pasture ages were determined from a time series of Landsat TM images classified using spectral mixture analysis. Although regional averages showed some of the temporal trends expected based on field study results (e.g. increase in pH following forest clearing), the trends were not statistically significant. Stratification by precipitation and other variables showed pasture age to be important but difficult to separate from other potential controls on soil conditions, mainly because of the reduced number of observations in each stratum. Using multiple regression, which permitted the inclusion of all potential explanatory factors and interactions, pasture age was shown to be a statistically significant predictor of soil conditions. However, the expected temporal sequence of changes documented by field chronosequence studies could not be reproduced. Properties dominated by large‐scale environmental gradients – pH, sum of base cations, aluminum saturation, and exchangeable calcium – were moderately well modeled, while those more strongly linked to dynamic spatially heterogeneous processes such as biological cycling and land management, particularly organic carbon and nitrogen, could not be modeled. Management‐induced soil changes occur at too fine a scale to be captured by most maps, and the relative changes are small compared with spatial heterogeneity caused by controls on soil development over large regions. Therefore, regardless of whether chronosequence‐derived models of biogeochemical response to land‐cover change are correct, the results of these models will not lead to spatially explicit maps that can be validated by regional reconnaissance, nor will they facilitate realistic predictions of the regional biogeochemical consequences of land‐cover change. The change from local to regional scale entails a change in the relative importance of processes controlling soil property behavior.     

Distribution and Local Species Diversity of Freshwater Ostracoda in Relation to Habitat in the Kahramanmaraş Province of Turkey

To understand the relationship between local (alpha) diversity of ostracods and their distribution, 95 different locations were randomly sampled from southern Kahramanmaraş (Turkey) between 7 June and 31 July, 2010. Total of 46 ostracods were encountered from 68 sites. Four alpha diversity indices (Shannon‐Wiener, Menhinick, Brillouin, Margalef) individually quantified higher species diversity and evenness for three types of habitats (limnocrene springs, ponds, stream). Diversity partitioning analyses revealed a significant and substantial beta‐diversity among the sites. First axis of CCA exhibited about 71% of the correlations between species and environmental variables. Water temperature, having either a negative or positive correlation with individual species, was the most influential factor affecting diversity. Altitude did not significantly affect the numbers of species identified from the elevation ranges of 400–600 m and 800–1000 m. At least nine cosmopolitan species from 56 sites had an important contribution to local diversity. Hence, suitability of aquatic (ecological) conditions and habitat types provide better explanations for ostracod diversity than do other abiotic factors such as altitude, pH and salinity. The results may support the Habitat Diversity Hypothesis but the study needs to be expanded to different regions and cannot be generalized at the moment. (© 2012 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Riparian zone as a main determinant of the structure of lizard assemblages in upland Amazonian forests

The use of lizards as model organisms in ecological studies is based on their success in occupying a great diversity of habitats, and some species are closely tied to the environment, which is disadvantaged by the legislation of several countries concerning land use. Our aim was to relate lizard species distribution patterns in rainforest environments to variation in environmental gradients, and provide ecologically based metrics for establishing buffer zones around streams. Lizards were sampled three times in 41 standardised transects near Manaus, Brazil, only in dry season, with Time Limited Visual Search associated with raking through leaf litter. We recorded 20 species from 10 families and used non‐metric multidimensional scaling to reduce the dimensionality of quantitative and qualitative compositions of species. Multiple linear regression models indicated that the environmental gradients distance to nearest stream, extent of canopy openness, vegetation density and slope did not significantly influence assemblage species distribution, with an indication of effect of litter depth. By means of piecewise linear regression, the use of riparian zone was estimated at ~190 m from quantitative species composition and ~211 m from qualitative species composition. Five species occurred only in the riparian zone. Our results suggest that conservation of the entire riparian lizard assemblage in Amazonian rainforest is likely to require protection of at least a 211 m buffer on either side of streams.