A Novel Metalloproteinase,Almelysin, from a Marine Bacterium,Alteromonas sp. No. 3696: Purification and Characterization

We have discovered a novel metalloproteinase, which has high activity at low temperatures, from the culture supernatant of a marine bacterium. The strain was identified as Alteromonas sp. No. 3696. The metalloproteinase, named almelysin, was purified to homogeneity from the cultured supernatant at 10°C by two column chromatographies. About 20 mg of purified almelysin was obtained from 18.4 liters of the culture supernatant. The molecular mass of almelysin was estimated to be 28 kDa by SDS–PAGE and the isoelectric point was 4.3. The optimum pH for activity of almelysin was pH 8.5–9.0 and 6.5 using casein and (7-methoxycoumarin-4-yl)acetyl(MOCAc)-Pro-Leu-Gly-Leu-(N³-[2,4-dinitrophenyl]-L-2,3-di-aminopropionyl)[A₂pr(Dnp)]-Ala-Arg-NH₂ as substrates, respectively. Almelysin was stable between pH 7.5–8.0 and below 40°C. The optimum temperature for the activity was observed to be 40°C using both casein and MOCAc-Pro-Leu-Gly-Leu-A₂pr(Dnp)-Ala-Arg-NH₂ as substrates. The activity of almelysin was inhibited by such metallo chelators as EDTA and o-phenanthroline, while talopeptin, phosphoramidon, and SMPI, typical metalloproteinase inhibitors, had no effect. Almelysin primarily cleaved the Ala¹⁴-Leu¹⁵ bond and Phe²⁴-Phe²⁵ bond, and secondarily the Tyr¹⁶-Leu¹⁷ bond in oxidized insulin B-chain. However, almelysin could not cleave the His⁵-Leu⁶, His¹⁰-Leu¹¹, and Gly²³-Phe²⁴ bonds, which were cleaved by other metalloproteinases. These results indicate that the substrate specificity of almelysin is different from other metalloproteinases. Interestingly, Alteromonas sp. No. 3696 strain produced another proteinase as well as almelysin at 25°C.     

Isolation and characterization of chitinase from a marine bacterium Vibrio sp.

A chitinase was separated from the culture broth of Vibrio sp. 11211 isolated from sediment from the South China Sea. The chitinase was purified 18.3-fold with 33% recovery by ammonium sulphate precipitation and chromatography. The subunit molecular weight of the enzyme was estimated by SDS-PAGE to be about 30kDa. The enzyme showed optimum pH at 6.5 and optimum temperature at 50^°C, and was stable in the pH range of 4 to 9 and at the temperature below 40^°C.     

Substrate Specificity of a Novel Alcohol Resistant Metalloproteinase,Vimelysin, from Vibrio sp. T1800

Vimelysin is a novel alcohol resistant metalloproteinase from Vibrio sp. T1800. The substrate specificity of vimelysin was studied by using natural and furylacryloyl dipeptide substrates. Vimelysin cleaved mainly Pro⁷-Phe⁸ bond and slightly Tyr⁴-Ile⁵ bond in human angiotensin I. Vimelysin also cleaved mainly Phe²⁴-Phe²⁵ and Tyr¹⁶-Leu¹⁷ bonds, and slightly His⁵-Leu⁶, His¹⁰-Leu¹¹, Ala¹⁴-Leu¹⁵, and Gly²³-Phe²⁴ bonds in oxidized insulin B-chain. The substrate specificity of vimelysin, by using furylacryloyl (Fua) dipeptides were also studied. The ratio of k_cat/K_m for Fua-Gly-Phe-NH₂/Fua-Gly-Leu-NH₂, Fua-Phe-Leu-NH₂/Fua-Gly-Leu-NH₂, and Fua-Phe-Phe-NH₂/Fua-Gly-Leu-NH₂ were 15.9, 27.8, and 59.0, respectively. These results indicate that vimelysin easily recognizes phenylalanine in P1′ positions, which is different from thermolysin.     

The Effects of Cyanate in Urea Solutions on the Gel Electrophoresis of the Subunits of Soybean 11S Globulin

For the screening of potent proteases of plant origin, gelatinolytic activities were measured for various vegetables and fruits. Green asparagus, kiwi fruit and miut were found to possess high proteolytic activities. Optimum temperatures for the activities of green asparagus and miut were 40 to 45°C and that of kiwi fruit was 60°C. Optimum pHs for the three activities were in neutral or slightly alkaline regions. The proteolytic enzymes of kiwi fruit and miut were stimulated by cysteine and EDTA but that of green asparagus was unaffected by them.     

海洋弧菌褐藻胶裂解酶的分离纯化及性质

从海带糜烂物中分离到一株高产胞外褐藻胶裂解酶的海洋弧菌 (Vibriosp .QY10 1) ,利用硫酸铵沉淀、离子交换层析、凝胶过滤层析等方法从发酵液中分离纯化了褐藻胶裂解酶 (alginatelyase)。SDS PAGE电泳结果表明 ,该酶分子量为 39kD。酶反应最适pH为 7.5 ,最适反应温度为 30℃。Na 、Ca2 、Mn2 对酶活性有促进作用 ,Fe2 、Ni2 以及EDTA对酶活性有抑制作用。酶的底物专一性初步分析结果表明 ,该酶具有降解多聚古罗糖醛酸[poly(G) ]及多聚甘露糖醛酸 [poly(M) ]的活性。     

从白蚁中分离到具有纤维素酶活的贪噬菌

以黄胸散白蚁Reticulitermes flaviceps后肠为材料,分离培养具有降解纤维素能力的微生物,以进一步了解白蚁后肠微生物的种类。通过以羧甲基纤维素钠(CMC-Na)为唯一碳源的富集及选择培养基培养、筛选,获得一株具有纤维素酶活的菌株R3063。形态学鉴定、革兰氏染色观察及16S rDNA基因序列分析表明该菌株属于贪噬菌(Variovorax sp.)。目前尚未见贪噬菌具有纤维素酶活的报道。     

Identification of intestinal bacteria from Japanese flounder (Paralichthys olivaceus) and their ability to digest chitin

AIMS: The aim of the present study was to clarify the taxonomic status of intestinal bacteria isolated from Japanese flounder (Paralichthys olivaceus) and describe their ability to digest chitin. METHODS AND RESULTS: Phylogenetic analysis based on 16S ribosomal DNA (rDNA) sequences showed that 82 representative isolates were closely related to three major species of marine vibrios, Vibrio scophthalmi-Vibrio ichthyoenteri group (41 isolates), Vibrio fischeri (39 isolates) and Vibrio harveyi (two isolates), with similarities of 97.2-99.8%, 96.4-100% and 98.6-99.5% respectively. These findings indicate that V. scophthalmi-V. ichthyoenteri group is indigenous to the intestinal tract of Japanese flounder. Moreover, the ability of 82 isolates to digest chitin was examined using the agar plate method and PCR amplification of the chiA gene. The two V. harveyi isolates and 36 of 41 V. scophthalmi-V. ichthyoenteri isolates digested chitin and were chiA PCR positive, whereas all 39 V. fischeri isolates digested chitin but were chiA PCR negative. CONCLUSIONS: Intestinal bacteria from Japanese flounder were mainly composed of Vibrio scophthalmi-V. ichthyoenteri group and V. fischeri. Taken together, the results showed that 81 of 82 isolates could digest chitin. However, only 38 of these isolates possessed a chiA homologue which could be identified by PCR. SIGNIFICANCE AND IMPACT OF THE STUDY: The present study shows that Japanese flounder harbours bacteria of the V. scophthalmi-V. ichthyoenteri group, and these results are similar to what has been found for turbot (Scophthalmus maximus).     

Seven New Eimeria spp. (Protozoa,Coccidia) from Freshwater Fishes of Canada*

Seven new species of Eimeria are described and figured from the freshwater fishes of Ontario and Quebec, Canada. They are Eimeria catostomi sp. n. and E. fernandoae sp. n. from Catostomus commersoni (Lacépède), E. etheostomae sp. n. from Etheostoma exile (Girard), E. hoffmani sp. n. from Umbra limi (Kirtland), E. micropteri sp. n. from Micropterus dolomieui Lacépède E. pungitii sp. n. from Pungitius pungitius (Linnaeus), and E. salvelini sp. n. from Salvelinus fontinalis (Mitchill). Furthermore, 2 new host records and 2 new distribution records for North America are reported for E. anguillae Léger & Hollande, 1922 and E. truttae Léger & Hesse, 1919 respectively. Finally, morphologically similar oocysts found in various cyprinids are regarded as belonging to E. iroquoina Molnar & Fernando, 1974.     

Purification and Properties of Trypsin Inhibitor from Hakuhenzu Bean (Dolichos lablab)

A highly purified trypsin inhibitor was obtained from the oriental plant Hakuhenzu bean (Dolichos lablab) by column chromatography on DEAE-Sephadex and gel-filtration on Sephadex G–75. The purified Hakuhenzu bean trypsin inhibitor (HTI) was obtained as a chemically homogeneous protein, and was stable to heat and to enzymes such as pepsin. It shows no obvious maximum at 280 nm in the ultraviolet absorption spectrum, and it contains more than 20% carbohydrate as galactose and 10% hexosamine as glucosamine. The molecular weight of this inhibitor was determined to be approximately 9,500 by gel-filtration. The protein contained 59 residures of amino acids; Lys₃, His₄, Arg₁, Asp₈, Thr₃, Ser₉, Glu₆, Pro₅, Gly₁, Ala₃, l/2Cys₁₀, Val₁, Ile₁, Leu₂, Tyr₁, Phe₁, from which a molecular weight of 6,400 is obtained. No methionine and tryptophan were found in the amino acid composition of the inhibitor. This inhibitor showed inhibitory activity against α-chymotrypsin in addition to trypsin.     

On a new species of Keratella (Rotifera: Monogononta: Brachionidae)

A new species of planktonic rotifer, Keratella sinensis n.sp.is described from Lake Yaoquan, Heilongjiang, P.R. China. Itprobably also occurs in the Republic of Korea and Japan. The newmorphospecies is characterised by an unusually smooth lorica, andstrongly reduced lateral anterior spines. It is the first exampleof a planktonic freshwater rotifer, endemic to North EastAsia.     

A comparison of thiosulphate-citrate-bile salts-sucrose (TCBS) agar and thiosulphate-chloride-iodide (TCI) agar for the isolation of Vibrio species from estuarine environments

AIMS: The purpose of this study was to compare a recently described medium, thiosulphate-chloride-iodide (TCI), for the isolation of estuarine vibrios with thiosulphate-citrate-bile salts-sucrose (TCBS). METHODS: A total of 492 colonies which developed on these media from estuarine water samples taken monthly over a 10-month period were examined. RESULTS: A much larger number of colonies developed on TCBS than TCI, and minimal taxonomic criteria indicated that a higher percentage (61%) of TCBS colonies could be identified as Vibrio spp. when compared with TCI (46%). SIGNIFICANCE: This study suggests that TCBS is a superior medium when compared with TCI for the isolation of Vibrio spp. from estuarine waters. Because of the public health risk presented by V. vulnificus, V. parahaemolyticus, V. cholerae and other vibrios, the selection of the most appropriate medium for their isolation is extremely important.     

Phylogeny of nitrite reductase (nirK) and nitric oxide reductase (norB) genes from Nitrosospira species isolated from soil

Ammonia-oxidizing bacteria are believed to be an important source of the climatically important trace gas nitrous oxide (N(2)O). The genes for nitrite reductase (nirK) and nitric oxide reductase (norB), putatively responsible for nitrous oxide production, have been identified in several ammonia-oxidizing bacteria, but not in Nitrosospira strains that may dominate ammonia-oxidizing communities in soil. In this study, sequences from nirK and norB genes were detected in several cultured Nitrosospira species and the diversity and phylogeny of these genes were compared with those in other ammoniaoxidizing bacteria and in classical denitrifiers. The nirK and norB gene sequences obtained from Nitrosospira spp. were diverse and appeared to be less conserved than 16S rRNA genes and functional ammonia monooxygenase (amoA) genes. The nirK and norB genes from some Nitrosospira spp. were not phylogenetically distinct from those of denitrifiers, and phylogenetic analysis suggests that the nirK and norB genes in ammonia-oxidizing bacteria have been subject to lateral transfer.     

Gregarines of the Genus Lecudina (Protozoa,Apicomplexa) from Pacific Ocean Polychaetes*

The gregarine Lecudina longissima Hoshide, 1944 is described from the intestine of the marine polychaete Lumbrineris zonata (Johnson, 1901) from Santa Catalina Island, Calif. L. catalinensis n. sp. is described from the intestine of L. inflata Moore, 1911 from the same island. L. pherusae sp. n. and L. zimmeri sp. n. are described from the intestine of the marine polychaete Pherusa capulata (Moore, 1909) off Santa Catalina Island.     

Molecular Characterization of Endophytic Bacteria from Metal Hyperaccumulator Aquatic Plant (Eichhornia crassipes) and Its Role in Heavy Metal Removal

In this study, among a collection of heavy metals resistant endophytic bacterial strains isolated from aquatic hyperaccumulator plant (Eichhornia crassipes), one plant growth promoting endophytic bacteria (PGPE), SVUB4 was selected for its ability to utilize 1-aminocyclopropane-1-carboxylic acid (ACC) as the sole N source and accumulate different heavy metals. The SVUB4 strain was characterized as Enterobacter sp. on the basis of its 16S rDNA sequences. Assessment of the parameters of plant growth promotion revealed the intrinsic ability of the strain for the production of IAA, siderophore and solubilization of insoluble phosphate. Furthermore, plasmid DNA analysis of Enterobacter sp. strain SVUB4 indicated the presence of a single large plasmid element. The results of plasmid curing experiments demonstrated that the ability of this strain to grow in presence of Cd and Zn was encoded by the 98 kb plasmid, whereas the ability to grow in the presence of Pb appeared to be encoded by the chromosome. The Cd and Zn removal capacity of the respective metal sensitive strain (plasmidless) were about 36 and 45 μg/g-1 DW, respectively, while the removal capacity of the both metal by metal resistant strain (p SVUB4) showed a significantly higher Cd and Zn removal capacity of 153 and 228 μg/g^?1 DW, respectively. However, both strains exhibited a similar pattern of Pb accumulation. The present observation also showed that for wild-type strain SVUB4 (pSVUB4), the overall level of IAA production in the absence and in the presence of Cd²⁺ or Zn²⁺was approximately the same. Nevertheless, strain SVUB4M in this respect appeared to be more sensitive to heavy metals: a noticeable decrease in IAA production was observed under the effect of both metals, especially with Cd²⁺.     

Selenidium fauchaldi sp. n. and S. telepsavi (Stuart) comb. nov. (Protozoa,Apicomplexa), Gregarines from Polychaetes*

Gregarine Selenidium fauchaldi sp. n. is described from the intestinal lumen of the polychaete Phragmatopoma californica (Fewkes, 1889) in the intertidal zone of the Pacific Ocean on Santa Catalina Island, California. In addition, the new combination Selenidium telepsavi (Stuart, 1871) comb. nov. is introduced for the gregarine originally described as Monocystis telepsavi from the polychaete Telepsavus castarum in the Black Sea.     

In Situ Microspatial Imaging Using Two-Photon and Confocal Laser Scanning Microscopy of Bacteria and Extracellular Polymeric Secretions (EPS) Within Marine Stromatolites

The combination of a hydrophilic embedding resin, Nanoplast, with fluorescent probes, and subsequent imaging using two-photon and confocal laser scanning microscopy (2P-LSM and CLSM) has allowed in imaging of the in situ microspatial arrangements of microbial cells and their extracellular polymeric secretion (EPS) within marine stromatolites. Optical sectioning by 2P-LSM and CLSM allowed imaging of endolithic cyanobacteria cells, Solentia sp., seen within carbonate sand grains. 2P-LSM allowed very clear imaging with a high resolution of bacteria using DAPI, which normally require UV excitation and reduced photo-bleaching of fluorescent probes.     

A new marine interstitial ingolfiellid (Crustacea,Amphipoda, Ingolfiellidea) from Tenerife and Hierro

Ingolfiella canariensis n. sp., from coarse sand and gravel in the mediolittoral zone of Tenerife and Hierro, Canary Islands, is described. The new species shares supposedly apomorphous characters with species from comparable habitats from the Andaman Islands, Bermuda and Curaçao (Netherlands Antilles). The female of Ingolfiella similis Rondé-Broekhuizen & Stock, 1987, from Fuerteventura is also described.     

The genus Antillophos Woodring, 1928 (Gastropoda: Buccinidae) from the China seas,with description of a new species

The species of genus Antillophos Woodring, 1928 Woodring, W.P. (1928) Miocene Mollusks from Bowden, Jamaica. 2. Gastropods and Discussion of Results. Contributions to the Geology and Paleontology of the West Indies. Carnegie Institute of Washington, Washington D.C. [Google Scholar] from the China seas are studied. Six species, Antillophos liui n. sp., Antillophos lucubratonis Fraussen & Poppe, 2005 Fraussen, K. & Poppe, G.T. (2005) Revision of Phos and Antillophos (Buccinidae) from the Central Philippines. Visaya 1, 76–115. [Google Scholar], Antillophos monsecourorum Fraussen & Poppe, 2005 Fraussen, K. & Poppe, G.T. (2005) Revision of Phos and Antillophos (Buccinidae) from the Central Philippines. Visaya 1, 76–115. [Google Scholar], Antillophos pyladeum (Kato, 1995 Kato, S. (1995) Discussion of the genus Phos. Hitaciobi 70, 15–20. [Google Scholar]), Antillophos roseatus (Hinds, 1844 Hinds, R.B. (1844) Mollusca. In: Hinds, R.B. (Ed.) The Zoology of the Voyage of H.M.S. Sulphur During the years 1836–1842. 2. Smith, Elder and Co., London, pp. 1–72. [Google Scholar]) and Antillophos sp., are described and illustrated.

http://zoobank.org/urn:lsid:zoobank.org:pub:51481997-A841-4F37-8E15-B753DC99CB4D     

我国蚕豆根瘤菌的数值分类及其16SrDNA PCR-RFLP研究

对分离自我国11个省24个地区49株蚕豆根瘤菌及11株参比菌株进行了唯一碳源、氮源、抗生素、耐逆性和酶活性等138个表型性状测定,并用MINTS软件进行聚类分析。结果表明,全部供试菌株在59％的相似水平上聚在一起,在80％的相似水平上可分为6个群。其中群4与参比菌株聚在一起,而其他5个群均由未知菌组成。进一步对36株菌进行了16S rDNA PCR—RFLP分析,在85％相似水平上供试菌可分为4个群和1个独立的分支,其聚群结果与数值分类结果有较好的一致性。表型及遗传型分析结果表明,我国蚕豆根瘤菌具有极大的多样性。