中国鸟类的生活史和生态学特征数据集

中国现有1,445种鸟类, 是世界上鸟类物种数最多的国家之一。物种特征反映了生物有机体的功能和适合度, 在生态学、进化生物学和保护生物学研究中具有重要作用。但是, 目前还没有关于我国鸟类生活史、生态学和地理分布等物种特征的完整数据库。通过系统查阅文献和各种数据资料, 本文共收集整理出了中国1,445种鸟类17个功能特征数据: 体重、体长、嘴峰长、翅长、尾长、跗蹠长、食性、窝卵数、卵大小、卵体积、巢址、巢的类型、集群状况、迁徙状况、是否特有种、地理分布范围和分布省份等。在这些特征中, 除迁徙状况、是否特有种、地理分布范围和分布省份外, 其余特征数据均存在不同程度的缺失, 数据的完整度为60.83%‒100%。本数据库是目前关于中国鸟类最新和最全的物种特征数据库, 期望能为我国鸟类生态学、进化生物学、生物地理学、保护生物学等研究提供支持。     

Effects of shell morphological traits on the weight traits of Manila clam (Ruditapes philippinarum)

The shell length, height, and width, live body weight, and edible tissue weight of Manila clam of 1, 2, and 3 years of age were measured, and their correlation coefficients were calculated. The shell morphological traits were used as independent variables, and live body weight or edible tissue weigh used as a dependent variable for calculating the path coefficients, correlation index and determination coefficients. The results showed that the correlation coefficients between each shell morphological trait and the live body weight or edible tissue weight were all highly significant (P < 0. 01). The shell height at 1-year old clams was highly correlated with the live body weight and edible tissue weight. The shell width of 2- to 3-year-old clams was strongly associated with the live body weight, while the shell length was closely linked to the edible tissue weight. The results of coefficients of determination for the morphological traits against weight traits agreed well with the results of path analysis. The correlation indices for all morphological traits against weight traits were approximately the same as determination coefficients regardless of clam age. The correlation indices (R²) of morphological traits against the live body weight of clams of all ages and edible tissue weight of 1-year-old clams were larger than 0.85, but R² of morphological traits against the edible tissue weight of 2- and 3-year-old clams was smaller than 0.85, indicating that some other factors might be associated with the edible tissue weight of 2- and 3-year-old clams. Multiple regression equations were obtained to estimate shell length X₁ (cm), shell height X₂ (cm), shell width X₃ (cm) against live body weight Y (g), edible tissue weight Z (g): for 1-year-old clams: Y = ?4.317 + 0.18X₁ + 0.147X₂, (X₁ < 0.01, X₂ < 0.01), Z = ?1.011 + 0.095X₂, (X₂ < 0.01); for 2-year-old clams: Y = ?15.119 + 0.249X₁ + 0.176X₂ + 0.688X₃, (X₁ < 0.01, X₃ < 0.01), Z = ?4.248 + 0.198X₁, (X₁ < 0.05, X₃ < 0.01); and for 3-year-old clams: Y = ?25.013 + 0.415X₁ + 1.184X₃, (X₁ < 0.01, X₃ < 0.01), Z = ?7.082 + 0.119X₁ + 0.332X₃, (X₁ < 0.05, X₃ < 0.01).     

Biological and ecological traits of benthic freshwater macroinvertebrates: relationships and definition of groups with similar traits

• 1 Relating species traits to habitat characteristics can provide important insights into the structure and functioning of stream communities. However, trade‐offs among species traits make it difficult to predict accurately the functional diversity of freshwater communities. Many authors have pointed to the value of working with groups of organisms as similar as possible in terms of relationships among traits and have called for definition of groups of organisms with similar suites of attributes.
• 2 We used multivariate analyses to examine separately the relationships among 11 biological traits and among 11 ecological traits of 472 benthic macroinvertebrate taxa (mainly genera). The main objective was to demonstrate (1) potential trade‐offs among traits; (2) the importance of the different traits to separate systematic units or functional groupings; and (3) uniform functional groups of taxa that should allow a more effective use of macroinvertebrate biological and ecological traits.
• 3 We defined eight groups and 15 subgroups according to a biological trait ordination which highlighted size (large to small), reproductive traits (K to r strategists), food (animal to plant material) and feeding habits (predator to scraper and/or deposit feeder) as ‘significant’ factors determining the ordination of taxa. This ordination partly preserved phylogenetic relationships among groups.
• 4 Seven ecological groups and 13 ecological subgroups included organisms with combinations of traits which should be successively more adequate in habitats from the main channel to temporary waters, and from the crenon to the potamic sections of rivers, and to systems situated outside the river floodplain. These gradients corresponded to a gradual shift from (1) rheophilic organisms that lived in the main channel of cold oligotrophic mountain streams to (2) animals that preferred eutrophic habitats of still or temporary waters in lowlands. The groups with similar ecological traits had a more diverse systematic structure than those with similar biological traits.
• 5 Monitoring and assessment tools for the management of water resources are generally more effective if they are based on a clear understanding of the mechanisms that lead to the presence or absence of species groups in the environment. We believe that groups with similar relationships among their species traits may be useful in developing tools that measure the functional diversity of communities.

     

Convergent elevation trends in canopy chemical traits of tropical forests

The functional biogeography of tropical forests is expressed in foliar chemicals that are key physiologically based predictors of plant adaptation to changing environmental conditions including climate. However, understanding the degree to which environmental filters sort the canopy chemical characteristics of forest canopies remains a challenge. Here, we report on the elevation and soil‐type dependence of forest canopy chemistry among 75 compositionally and environmentally distinct forests in nine regions, with a total of 7819 individual trees representing 3246 species collected, identified and assayed for foliar traits. We assessed whether there are consistent relationships between canopy chemical traits and both elevation and soil type, and evaluated the general role of phylogeny in mediating patterns of canopy traits within and across communities. Chemical trait variation and partitioning suggested a general model based on four interconnected findings. First, geographic variation at the soil‐Order level, expressing broad changes in fertility, underpins major shifts in foliar phosphorus (P) and calcium (Ca). Second, elevation‐dependent shifts in average community leaf dry mass per area (LMA), chlorophyll, and carbon allocation (including nonstructural carbohydrates) are most strongly correlated with changes in foliar Ca. Third, chemical diversity within communities is driven by differences between species rather than by plasticity within species. Finally, elevation‐ and soil‐dependent changes in N, LMA and leaf carbon allocation are mediated by canopy compositional turnover, whereas foliar P and Ca are driven more by changes in site conditions than by phylogeny. Our findings have broad implications for understanding the global ecology of humid tropical forests, and their functional responses to changing climate.     

Invited review: overview of new traits and phenotyping strategies in dairy cattle with a focus on functional traits

For several decades, breeding goals in dairy cattle focussed on increased milk production. However, many functional traits have negative genetic correlations with milk yield, and reductions in genetic merit for health and fitness have been observed. Herd management has been challenged to compensate for these effects and to balance fertility, udder health and metabolic diseases against increased production to maximize profit without compromising welfare. Functional traits, such as direct information on cow health, have also become more important because of growing concern about animal well-being and consumer demands for healthy and natural products. There are major concerns about the impact of drugs used in veterinary medicine on the spread of antibiotic-resistant strains of bacteria that can negatively impact human health. Sustainability and efficiency are also increasingly important because of the growing competition for high-quality, plant-based sources of energy and protein. Disruptions to global environments because of climate change may encourage yet more emphasis on these traits. To be successful, it is vital that there be a balance between the effort required for data recording and subsequent benefits. The motivation of farmers and other stakeholders involved in documentation and recording is essential to ensure good data quality. To keep labour costs reasonable, existing data sources should be used as much as possible. Examples include the use of milk composition data to provide additional information about the metabolic status or energy balance of the animals. Recent advances in the use of mid-infrared spectroscopy to measure milk have shown considerable promise, and may provide cost-effective alternative phenotypes for difficult or expensive-to-measure traits, such as feed efficiency. There are other valuable data sources in countries that have compulsory documentation of veterinary treatments and drug use. Additional sources of data outside of the farm include, for example, slaughter houses (meat composition and quality) and veterinary labs (specific pathogens, viral loads). At the farm level, many data are available from automated and semi-automated milking and management systems. Electronic devices measuring physiological status or activity parameters can be used to predict events such as oestrus, and also behavioural traits. Challenges concerning the predictive biology of indicator traits or standardization need to be solved. To develop effective selection programmes for new traits, the development of large databases is necessary so that high-reliability breeding values can be estimated. For expensive-to-record traits, extensive phenotyping in combination with genotyping of females is a possibility.     

Relationships between non-metric skeletal traits and cranial size and shape.

A long-standing controversy exists about the comparative utility of metric and non-metric traits as biological indicators in population studies. We hypothesize that the underlying scale which determines the presence or absence of a cranial non-metric trait is an expression of general and/or local size variation in the cranium. Therefore metric and non-metric traits will share a common developmental determination. The hypothesis implies that the underlying scale of a non-metric trait will be correlated with measures of cranial size and shape. Forty-eight cranial metric and twenty-five cranial non-metric traits were scored on the left side of adult male crania from four North American Indian populations. New threshold traits were generated for each non-metric trait by dichotomizing discriminant scores produced by discriminant function analysis. The discriminant analysis was performed using metric traits to discriminate between groups formed by non-metric trait presence or absence. Every non-metric trait tested was significantly correlated with its threshold trait in at least one population. The correlations were of moderate to high levels depending on the trait and population sample studied. This implies that metric and non-metric traits share a moderate to high degree of developmental determination. The cause of these correlations may lie in the common effects that growth and development of the soft tissue and functional spaces of the cranium exert on both metric and non-metric traits.     

Effects of shell morphological traits on the weight traits of Manila clam (Ruditapes philippinarum)

The shell length, height, and width, live body weight, and edible tissue weight of Manila clam of 1, 2, and 3 years of age were measured, and their correlation coefficients were calculated. The shell morphological traits were used as independent variables, and live body weight or edible tissue weigh used as a dependent variable for calculating the path coefficients, correlation index and determination coefficients. The results showed that the correlation coefficients between each shell morphological trait and the live body weight or edible tissue weight were all highly significant (P < 0. 01). The shell height at 1-year old clams was highly correlated with the live body weight and edible tissue weight. The shell width of 2- to 3-year-old clams was strongly associated with the live body weight, while the shell length was closely linked to the edible tissue weight. The results of coefficients of determination for the morphological traits against weight traits agreed well with the results of path analysis. The correlation indices for all morphological traits against weight traits were approximately the same as determination coefficients regardless of clam age. The correlation indices (R²) of morphological traits against the live body weight of clams of all ages and edible tissue weight of 1-year-old clams were larger than 0.85, but R² of morphological traits against the edible tissue weight of 2- and 3-year-old clams was smaller than 0.85, indicating that some other factors might be associated with the edible tissue weight of 2- and 3-year-old clams. Multiple regression equations were obtained to estimate shell length X₁ (cm), shell height X₂ (cm), shell width X₃ (cm) against live body weight Y (g), edible tissue weight Z (g): for 1-year-old clams: Y = ?4.317 + 0.18X₁ + 0.147X₂, (X₁ < 0.01, X₂ < 0.01), Z = ?1.011 + 0.095X₂, (X₂ < 0.01); for 2-year-old clams: Y = ?15.119 + 0.249X₁ + 0.176X₂ + 0.688X₃, (X₁ < 0.01, X₃ < 0.01), Z = ?4.248 + 0.198X₁, (X₁ < 0.05, X₃ < 0.01); and for 3-year-old clams: Y = ?25.013 + 0.415X₁ + 1.184X₃, (X₁ < 0.01, X₃ < 0.01), Z = ?7.082 + 0.119X₁ + 0.332X₃, (X₁ < 0.05, X₃ < 0.01).     

中国两栖类生活史和生态学特征数据集

截至2021年底, 中国共记载591种两栖类(不包括外来入侵种), 是世界上两栖类物种数最多的国家之一。物种特征影响和决定了物种在环境中的生存能力, 在进化生物学、生态学和保护生物学研究中具有重要作用。目前, 中国两栖类在线数据库(https://www.amphibiachina.org)已经整理了我国两栖类的形态特征、生物学信息和地理分布等部分物种特征, 但仍缺乏一个完整的、可自由检索的数据集。通过系统查阅文献和数据检索, 本文收集整理了中国全部591种本土两栖类的22个特征数据, 包括物种发现时间(最早发现和描述新物种文章的发表时间)、模式产地、中国受威胁等级、全球受威胁等级、致危因子、是否中国特有种、是否岛屿特有种、雄性体长、雌性体长、窝卵数、卵径、产卵地点、幼体主要生境、成体微生境、活动模式、生殖周期、繁殖时间、是否有亲本照顾、受精方式、海拔范围、分布地区、分布省份数。除了物种发现时间、是否岛屿特有种、分布地区、分布省份数外, 其余特征数据都有不同程度的缺失, 数据完整度为27.92%-100%, 平均完整度为71.72%, 标准差为24%。本数据集是目前我国两栖类最新和最全的物种特征数据库, 希望可以为我国两栖类生态学、保护生物学、生物地理学等研究提供数据支持。     

Genetic correlations between production and semen traits in pig

Genetic correlations between production traits (average daily gain from birth till the end of the field test and ultrasonically predicted lean meat content at the end of the field test) and semen traits (semen volume, sperm concentration, motility, percentage of abnormal spermatozoa, total number of spermatozoa and number of functional spermatozoa) were estimated from a large dataset (44 500 observations for production traits and more than 150 000 ejaculates from 2077 boars). The boars belonged to the breeds Duroc, Piétrain and Large White or were crossbreds between them. All estimated genetic correlations were low (maximal absolute value 0.13). Therefore, selection on production traits is expected to have only low effects on semen traits.     

Risk factors associated with lambing traits

The objective of this study was to establish the risk factors associated with both lambing difficulty and lamb mortality in the Irish sheep multibreed population. A total of 135 470 lambing events from 42 675 ewes in 839 Irish crossbred and purebred flocks were available. Risk factors associated with producer-scored ewe lambing difficulty score (scale of one (no difficulty) to four (severe difficulty)) were determined using linear mixed models. Risk factors associated with the logit of the probability of lamb mortality at birth (i.e. binary trait) were determined using generalised estimating equations. For each dependent variable, a series of simple regression models were developed as well as a multiple regression model. In the simple regression models, greater lambing difficulty was associated with quadruplet bearing, younger ewes, of terminal breed origin, lambing in February; for example, first parity ewes experienced greater (P<0.001) lambing difficulty (1.56±0.02) than older ewes. The association between lambing difficulty and all factors persisted in the multiple regression model, and the trend in fixed effects level solutions did not differ from the trend observed in the simple regression models. In the simple regression analyses, a greater odds of lamb mortality was associated with male lambs (1.31 times more likely of death than females), lambs of very light (2 to 3 kg) and very heavy (>7.0 kg) birth weights, quadruplet born lambs and lambs that experienced a more difficult lambing (predicted probability of death for lambs that required severe and veterinary assistance of 0.15 and 0.32, respectively); lambs from dual-purpose breeds and born to younger ewes were also at greater risk of mortality. In the multiple regression model, the association between ewe parity, age at first lambing, year of lambing and lamb mortality no longer persisted. The trend in solutions of the levels of each fixed effect that remained associated with lamb mortality in the multiple regression model, did not differ from the trends observed in the simple regression models although the differential in relative risk between the different lambing difficulty scores was greater in the multiple regression model. Results from this study show that many common flock- and animal-level factors are associated with both lambing difficulty and lamb mortality and management of different risk category groups (e.g. scanned litter sizes, ewe age groups) can be used to appropriately manage the flock at lambing to reduce their incidence.     

水分和养分添加对羊草功能性状和地上生物量的影响

研究水分和养分添加对植物功能性状的影响, 对于揭示植物对环境变化的响应和适应规律至关重要。该文采用盆栽试验的方法, 进行不同水平水分处理(增水50%, 减水50%, 以498 mm降水量作为对照)和养分添加(无养分添加, 单施氮肥, 单施磷肥, 氮磷共施), 研究羊草(Leymus chinensis)的10种功能性状和地上生物量对水分和养分添加的响应。得出以下结论: (1)双因素方差分析结果表明, 水分主效应对羊草株高、分蘖数、茎生物量、叶生物量、叶面积、叶质量、净光合速率、蒸腾速率、水分利用效率存在显著影响; 养分主效应对羊草分蘖数、茎生物量、净光合速率、蒸腾速率、水分利用效率存在显著影响; 水分和养分的交互作用对羊草分蘖数、茎生物量、蒸腾速率、水分利用效率存在显著影响。(2)各功能性状对降水量的响应在不同养分添加水平是不同的, 分蘖数和叶面积在单施氮肥和氮磷共施条件下随降水量增加而增加, 而在无养分添加和单施磷肥条件下无显著变化; 茎生物量在无养分添加、单施氮肥和单施磷肥条件下随降水量增加而增加, 而在氮磷共施条件下无增加趋势; 比叶面积在单施氮肥条件下增水处理显著低于对照组, 而在其他养分添加条件下无明显变化。(3)短期氮磷处理显著影响羊草叶片光合生理性状, 而对叶形态性状影响不显著。(4)羊草地上生物量随降水量的增加呈现上升趋势, 并且在单施氮肥条件下, 增水处理使地上生物量达到最高, 为522.55 g·m ^-2。总之, 羊草的功能性状对降水量增加表现出明显的响应, 响应格局在不同养分条件下不同, 反映了其对水肥环境变化的适应。     

The quantitative genetics of sexually selected traits,preferred traits and preference: a review and analysis of the data

The maintenance of variation in sexually selected traits is a puzzle that has received increasing attention in the past several decades. Traits that are related to fitness, such as life‐history or sexually selected traits, are expected to have low additive genetic variance (and hence, heritability) due to the rapid fixation of advantageous alleles. However, previous analyses have suggested that the heritabilities of sexually selected traits are on average higher than nonsexually selected traits. We show that the heritabilities of sexually selected traits are not significantly different from those of nonsexually selected traits overall or when separated into the three trait categories: behavioural, morphological and physiological. In contrast with previous findings, the heritability of preference is quite low (h² = 0.25 ± 0.06) and is in the same range as life‐history traits. We distinguish preferred traits as a category of sexually selected traits and find that the heritability of the former is not significantly different than sexually selected traits overall (0.48 ± 0.04 vs. 0.46 ± 0.03). We test the hypothesis that the heritability of sexually selected traits is negatively correlated with the strength of sexual selection. As predicted, there is a significant negative correlation between the heritabilities of sexually selected traits and the strength of selection. This suggests that heritabilities do indeed decrease as sexual selection increases but sexual selection is not strong enough to cause heritabilities of sexually selected traits to deviate from the same type of nonsexually selected traits.     

Quantitative genetics of skeletal nonmetric traits in the rhesus macaques of Cayo Santiago. III. Relative heritability of skeletal nonmetric and metric traits

This study addresses the long-standing controversy in skeletal biology concerning the relative utility of skeletal metric and nonmetric traits for studies of biological relationship. This controversy centers on the relative heritability of these two trait sets. This paper presents heritabilities for a series of skeletal metric and nonmetric traits measured with the same sample of mother-offspring pairs from the Cayo Santiago skeletal collection of rhesus macaques. Skeletal nonmetric traits display significantly greater heritability estimates than metric traits. This difference is due primarily to the high heritability estimates of hyperostotic nonmetric traits. Foraminal traits are not significantly more heritable than skeletal metric traits. The generality of this pattern of heritability values, in which hyperostotic nonmetric traits are more highly heritable than foraminal nonmetric and metric traits, depends on future empirical study of the correlation of heritability values in populations and theoretical work.     

Family factors and somatic traits of newborns

The paper is focused on relationships between somatic traits of newborns and family factors. Data for 779 families and their offspirng born in hospitals of Bialystok and Zambrow were analyzed. Family factors were extracted based on a factor analysis of 23 family traits. Multiple regression analysis was used to find relationships between offspring traits and family factors. It has been found that the most important factor of the somatic development of the fetus is the body size of the mother and placenta weight (factor F5). The mother has a greater effect on the development of the child than the father does. Family culture (consciousness-F1) is an important factor during the prenatal devlopment, more important than socio-economic conditions of the family (F3). Also the effect of father's morbidity (factor F8) is relatively high, almost as high as the effect of mother's morbidity (factor F6), more important than the body build of the father (factor F7). Age of the parents and the number of earlier pregnancies (factor F2) have the lowest effect on somatic traits of newborns. Blood pressure of the mother (factor F4) has relatively little effect on the development of somatic traits in newborns. The traits most affected by family factors include frontal breadth, body weight, chest size, and hip breadth.     

中国哺乳动物形态、生活史和生态学特征数据集

物种特征是生物对生存环境适应和响应的表现, 反映了物种的生态位、适合度和生态功能。特征数据库的建立和共享是研究生物多样性维持与丧失、物种进化与适应、生态过程与生态系统功能、物种对气候变化和人类干扰响应、种内与种间关系等的基础。中国是世界哺乳动物物种数最多的国家之一, 然而目前中国还没有包含哺乳动物形态、生活史、生态学和地理分布等物种特征的数据库。我们系统查阅了文献和各种数据资料, 共收集整理出中国有分布记录的754种哺乳动物(包括近些年野外绝灭种、分布存疑种)的体重、脑容量、体长、尾长、前臂长(翼手目)、后足长、耳长、性成熟时间、妊娠期、窝崽数、年窝数、世代长度、食性、活动模式、是否特有种、濒危等级、海拔范围、栖息地类型、栖息地宽度、动物地理界、生物群系、分布型、动物地理区划和分布省份或水域等24个生态特征数据。在这些特征中, 除了分布省份或水域及是否特有种外, 其余特征数据均存在不同程度的缺失, 数据的完整度为30%‒100%。本数据库收录的哺乳动物种数为目前中国哺乳动物种数的上限, 为中国哺乳动物研究提供了基础数据, 推进中国哺乳动物多样性信息共享和深度挖掘。     

植物功能性状对土壤保持的影响研究述评

植被对土壤保持具有重要的影响,但是从植物功能性状的角度总结评述植被对土壤保持影响的研究并不多见。总结评述了植物地上功能性状、地下功能性状对土壤保持功能的影响以及植物地上、地下功能性状的关系,认为:(1)植被地上部分功能性状对土壤保持的作用主要体现在对溅蚀、面蚀的影响及间接改变土壤理化性质等方面,其功能性状指标主要包括叶面积、叶长、叶宽、枝数、植被高度等;(2)植被地下部分功能性状对土壤保持的作用主要体现在固持土壤、提高土壤抗剪切强度、提高土壤抗侵蚀能力、增强土壤渗透性,植物根系固持土壤与根系抗拉能力密切相关,植物根系土壤的物理和水文性质,与细根比例、根长密度、根表面积等性状密切相关;(3)可以通过植物地上部分功能性状间接反映地下部分功能性状,但是现有研究多为定性认识;(4)在植物功能性状对土壤保持的研究中亟待加强植被地上地下功能性状的长期定位监测,深化植被功能性状尤其是根系特征与土壤保持的作用机理,加强植被地上部分、地下部分功能性状的定量表达,建立植被功能性状与土壤保持功能的定量关系,实现植被功能性状与土壤保持功能特征的动态链接。     

Simple inheritance of key traits distinguishing maize and teosinte

The segregation of key traits distinguishing maize and teosinte was analyzed in three F₂ and three backcross populations derived from crosses of the modern maize inbred T232 withZea mays ssp.parviglumis. These traits were (i) paired vs. single female spikelets; (ii) two-ranked vs. many-ranked ears; (iii) non-indurated vs. indurated glumes; (iv) inclination of the kernels toward the rachis, and (v) distichous vs. polystichous central staminate spike. All traits showed a simple mode of inheritance except for paired female spikes, which appeared to be controlled by two genes. The loci controlling these major changes were mapped with RFLP markers to four chromosomal regions. These results support the suggestion that maize became differentiated from teosinte with as few as five major gene changes.This paper is dedicated to the memory of Professor Jean Pernes