Phage typing ofSalmonella Typhi in the Netherlands

Summary A survey has been given of the results of phage typing of strains ofS. typhi found in Holland. It has been shown, that type A includes a different group of strains in systems drawn up with different Vi phages. An auxiliary system — to be used besides the system ofCraigie andYen — and a few new types, have been described.     

Lipopolysaccharides in four strains of the unicellular cyanobacterium Synechocystis

The results of the cross reactions of the 27 strains of Azospirillum spp. with 4 fluorescent antibodies (FA) show a neat differentiation between the two species. A. lipoferum represents a more homogenous group in respect to FA reactions and highly fluorescent preparations were obtained with strains from a large scope origin against Sp59 FA, the type strain. In contrast A. brasilense contains at least three sub groups in respect to FA reactions. The first includes all denitrifing strains (nir⁺) which react with FA from Sp7 the type strain. None of the nir^- strains reacted strongly with Sp7 FA. One part of the A. brasilense nir^- group which includes the strains isolated from well sterilized rice and wheat roots (Sp 107, 107 st, 106 and 109 st) reacts with FA of their reference strain Sp107 but not with that of Sp28 FA. The strains isolated from unsterilized roots and soils reacted with SP28 FA and not with that of Sp107 FA. In addition there were 3 strains (Sp A4, 34 and 67) which reacted with neither of the FAs.Abbreviations Fa fluorescent antibody - FITC fluorescein isothiocyanate - Rh ITC gelatin-rhodamine isothiocyanate - nir⁺ nitrite reductase positive - nir^- nitrite reductase negative     

Similarities of genome deoxyribonucleic acids ofPseudomonas strains isolated from meat

A total of 29Pseudomonas strains from meat and 14 reference strains of differentPseudomonas species were studied by DNA-DNA hybridization. Of the field strains, 15 were phenotypically similar toP. fragi; the others represented a new group described by Molin and Ternström [4], phenotypically related toP. fragi and the fluorescent pseudomonads; 12 strains of this phenotype formed one major DNA-relatedness group; the type strain ofP. fragi together with nine field strains formed another group. The remaining eight meat isolates could not be assigned to either of the two groups. The intergroup relatedness and the relatedness of both groups to the fluorescent pseudomonads was about 50%. Hybridization data indicate that the phenotype of Molin and Ternström deserves species rank and that this tentative species andP. fragi belong to the group of fluorescent pseudomonads.     

Occurrence in soil of thermo-acidophilic bacilli possessing ω-cyclohexane fatty acids and hopanoids

Out of different soil samples from neutral environments 50 thermo-acidophilic bacilli were isolated. All 23 strains tested contain ω-cyclohexane fatty acids in the range of 15–91% of the total fatty acids. In this group six strains possess hopane containing lipids (hopanoids). In contrast Bacillus coagulans, sometimes described as thermoacidophilic, contains no ω-cyclohexane fatty acids as was shown in seven strains. The degree to which the described strains were related to Bacillus acidocaldarius could not definitely be determined. To Prof. Dr. Erwin Bünning on the occasion of his 75th birthday     

Actinomycete diversity associated with foaming in activated sludge plants

Large numbers of mycolic acid-containing actinomycetes were isolated from foam and scum samples taken from three activated-sludge sewage-treatment plants using several selective isolation media. Organisms presumptively identified as gordonae formed the dominant population in all of the samples. A representative set of these strains have chemical properties consistent with their classification in the genusGordona. Forty-eight of theGordona strains were compared through 165 unit characters with the type strains of validly described species ofGordona. The resultant data were examined using the Jaccard and simple matching coefficients and clustering achieved using the unweighted pair group method with arithmetic averages algorithm. The numerical classification was only marginally affected by the statistics used or by test error, estimated as 3.92%. The isolates were assigned to five multi-membered and 28 single-membered clusters defined by the simple matching coefficient at the 89% similarity level. With few exceptions, the isolates were sharply separated from theGordona marker strains. Essentially the same classification was obtained when the test strains were examined using a Curie-point pyrolysis mass spectrometric procedure. It can be concluded that the gordonae form a heterogeneous taxonomic group, the members of which can be distinguished from representatives of validly described species ofGordona.     

Recent approaches to the taxonomy of the Gracilariaceae (Gracilariales,Rhodophyta) and the Gracilaria verrucosa problem

Recognition of species in the Gracilariaceae, often notoriously difficult, is being aided by a combination of classical and modern techniques. We review some recent findings and present new results that may lead to redefinition of Gracilaria verrucosa, the type species of its genus. Plastid DNA restriction profiles (patterns of banding obtained by electrophoresis of DNA after restriction endonuclease digestion) from eleven strains ascribed to G. verrucosa indicated that the concept of this species in northern Europe includes possibly three taxa, one of which is known now to be a species of Gracilariopsis. In contrast, restriction profiles from Argentinian and Japanese strains were closely similar to the predominant pattern for European G. verrucosa. Profiles of several other strains, from the western Atlantic and eastern Pacific, were dissimilar to the European group and to each other. A chromosome number of n = 24 was determined for a representative of the predominant European group, and preliminary results of hybridization trials suggest that these strains, and others with approximately the same plastid DNA restriction pattern, are interfertile.NRCC 30559     

Toward Modern Classification of Eustigmatophytes,Including the Description of Neomonodaceae Fam. Nov. and Three New Genera1

The class Eustigmatophyceae includes mostly coccoid, freshwater algae, although some genera are common in terrestrial habitats and two are primarily marine. The formal classification of the class, developed decades ago, does not fit the diversity and phylogeny of the group as presently known and is in urgent need of revision. This study concerns a clade informally known as the Pseudellipsoidion group of the order Eustigmatales, which was initially known to comprise seven strains with oval to ellipsoidal cells, some bearing a stipe. We examined those strains as well as 10 new ones and obtained 18S rDNA and rbcL gene sequences. The results from phylogenetic analyses of the sequence data were integrated with morphological data of vegetative and motile cells. Monophyly of the Pseudellipsoidion group is supported in both 18S rDNA and rbcL trees. The group is formalized as the new family Neomonodaceae comprising, in addition to Pseudellipsoidion, three newly erected genera. By establishing Neomonodus gen. nov. (with type species Neomonodus ovalis comb. nov.), we finally resolve the intricate taxonomic history of a species originally described as Monodus ovalis and later moved to the genera Characiopsis and Pseudocharaciopsis. Characiopsiella gen. nov. (with the type species Characiopsiella minima comb. nov.) and Munda gen. nov. (with the type species Munda aquilonaris) are established to accommodate additional representatives of the polyphyletic genus Characiopsis. A morphological feature common to all examined Neomonodaceae is the absence of a pyrenoid in the chloroplasts, which discriminates them from other morphologically similar yet unrelated eustigmatophytes (including other Characiopsis-like species).     

Transfer of plasmids fromEscherichia coli andPseudomonas aeruginosa to methylotrophic bacteria and their detection in the new hosts

Several plasmids of incompatibility group P were transferred fromEscherichia coli andPseudomonas aeruginosa strains toMethylophilus methylotrophus and two other methylotrophs to test their recipient ability. The presence of plasmids in transconjugants was confirmed by electrophoretic analysis. Optimal conditions for detection of plasmid DNA in the strains tested based on alkaline lysis of cells at elevated temperature were established. Special behaviour of plasmids carrying the Mu phage in methylotrophic hosts is described.     

DNA base composition and DNA relatedness among species of Trichosporon Behrend

The nuclear DNa of 28 species (30 strains investigated) of yeasts classified currently or previously in the genus Trichosporon. was analysed for its molar percentage of guanine + cytosine (mol% G+C). This criterion, together with biochemical characteristics, suggested the separation of the organisms studied into two groups. The first group, which appears related to the Ascomycetes, includes thirteen species with a G+C content lower than 50 mol% (34.7–48.8), and lacks urease (except T. margaritiferum). The second group appears related to the Basidiomycetes and includes fifteen species with a G+C content higher than 50 mol% (57–64) and has the ability to hydrolyse urea.A DNA homology experiment with T. beigelii and twelve other species of the second group showed very low values of complementarity with T. beigelii-labeled DNA. All these species must be considered as taxa other than T. beigelii.     

Characterization of motile and acetoin-negative Klebsiella pneumoniae strains by DNA: DNA hybridization

Hybridization studies were carried out to determine the extent of divergence between different members of the Enterobacteriaceae and group D, previously described by numerical analysis of phenotypic characters, and comprising strains isolated from surface waters. This group, apparently belonging in or related to the genus Citrobacter on the basis of the IMViC tests differs from this taxon by numerical analysis and DNA base composition. Our work reveals a DNA relatedness of 81–89% between the centrotype strain of this group and the genus Klebsiella. Although strains of group D show positive motility and negative Voges-Proskauer reactions, a comparison of their phenotypic characters leads us to consider that the strains with a high level of hybridization within this group belong to K. pneumoniae. These results suggest a complete revision of the traditional classification scheme of the genus Klebsiella.With the technical assistance of Nicole Marquis     

Linkage group analysis in Aspergillus niger

A variety of genes for auxotrophic, morphological and resistance characters of Aspergillus niger have been assigned to eight linkage groups by haploidisation of heterozygous diploids. Methods of linkage group analysis are described that avoid disturbance of linkage data by interference of mitotic crossing-over. Four master strains for linkage group analysis were constructed with markers for the eight linkage groups in such a way that a great variety of mutants can be analysed with one of them. Moreover, over 400 strains with various combinations of more than 70 markers can be used for specific situations. Strategies for analysis of production strains are discussed. The master strains and other strains with genetic markers are available and a list with genotypes can be sent on request. Correspondence to: C. J. Bos     

Relatedness among coagulase-negative staphylococci: Deoxyribonucleic acid reassociation and comparative immunological studies

DNA-DNA-homology values were determined under restrictive to relaxed reassociation conditions with type strains and some additional strains of coagulase-negative staphylococci belonging to ten different species. The immunological relationship of the catalases present in the type strains of these species was also determined by applying double immunodiffusion and microcomplement fixation. The results of these studies support the previous proposal to subdivide the coagulase-negative staphylococci into at least ten separate species. However, it is evident that some of the species are more closely related than others and can form species groups. According to the results presented in this study, the coagulase-negative staphylococci can be combined into five species groups: The Staphylococcus saprophyticus group is composed of S. saprophyticus, S. xylosus and S. cohnii. The S. epidermidis group comprises S. epidermis, S. capitis and S. warneri. The S. hominis group which exhibits a significant relationship to S. epidermidis includes S. hominis and S. haemolyticus. The species group S. sciuri consists of S. sciuri ssp. sciuri and S. sciuri ssp. lentus and the species group S. simulans is presently represented by the corresponding single species.Abbreviations G+C guanosine + cytosine - SSC standard saline citrate buffer This work was supported by Deutsche Forschungsgemeinschaft     

Characterization of a new organization of the plantaricin locus in the inducible bacteriocin-producing<Emphasis Type="Italic"> Lactobacillus plantarum</Emphasis> J23 of grape must origin

Lactobacillus plantarum J23 was previously characterized as a bacteriocin-producer-strain when it was cocultured with other lactic acid bacteria. In this work, the genetic organization of the pln locus in the J23 strain was studied and compared with those of previously described L. plantarum C11, WCFS1 and NC8 strains. A new organization of the plantaricin locus was detected in the J23 strain. The sequenced fragment (20,266 bp) comprised plnJLR, plnMNOP, plnEFI, plnGHSTUVWXY, and plNC8IF-plNC8HK-plnD operons, as well as a new region that includes three new orfs (GenBank accession number DQ323671). When the J23 pln gene sequences were compared with those included in the GenBank database, the identity of the putative encoded proteins was in the range 67.1–100%. The regulatory system and the repertoire of putative bacteriocins of the J23 pln locus presented important differences with respect to the ones of C11, WCFS1 and NC8, such as the absence of plnK and the presence of a larger plnJ gene than the previously described for the other L. plantarum strains. The pln locus in L. plantarum strains seems to be a mosaic-like structure with different modules and reorganizations that presents highly conserved regions related to transport and bacteriocin maturation and variable regions related to regulation and bacteriocin production.     

Classification of novel soil streptomycetes as Streptomyces aureus sp. nov., Streptomyces laceyi sp. nov. and Streptomyces sanglieri sp. nov

The taxonomic positions of soil isolates known as Streptomyces groups A, B and C were clarified. Comparative 16S rDNA sequence studies indicated that representatives of all three taxa formed distinct phyletic lines within the Streptomyces tree though the group A strains were shown to be related to Streptomyces griseus and associated validly described species. The taxonomic integrity of all three groups was highlighted by DNA:DNA relatedness and ribotype data though the group A strains encompassed a higher degree of genetic variation than the group B and C strains. In light of these and earlier phenotypic data it is proposed that Streptomyces groups A, B and C be given species status as Streptomyces sanglieri sp. nov., Streptomyces aureus sp. nov. and Streptomyces laceyi sp. nov., respectively. This revised version was published online in June 2006 with corrections to the Cover Date.     

Reisolation and growth conditions of Bacillus agar-exedens

Several agarolytic Bacillus strains have been isolated. Their properties agree with those described by Wieringa (1941) for Bacillus agar-exedens. These strains are the first reisolates since the original cultures were lost. A second group of isolates is related to the agarolytic B. palustris var. gelaticus of Sickles and Shaw (1934). B. agar-exedens requires carbohydrates for growth. In mineral-glucose media growth is inhibited by peptone at pH values of about 7 or less. Under alkaline conditions no inhibition by peptone is observed. A method for the enrichment of B. agar-exedens is described.     

Pseudomonas syringae pv. helianthi (Kawamura 1934) Dye, Wilkie et Young 1978, a Pathogen of Sunflower (Helianthus annuus L.)

Among the bacterial strains isolated from diseased sunflower leaves, eight were studied in some detail. A fluorescent pseudomonad isolated from necrotic tissues and its reisolates belong to group Ia of phytopathogenic pseudomonads which includes Pseudomonas syringae bacterium. A study of host range indicated that the pathogen infects only sunflower but not the other plant species. Based on the pathogenicity study and biochemical and physiological tests, it was concluded that the pathogen belongs to the bacterium Pseudomonas syringae pv. helianthi.     

Pseudomonas syringae pv. helianthi (Kawamura 1934) Dye,Wilkie et Young 1978, a Pathogen of Sunflower (Helianthus annuus L.)

Among the bacterial strains isolated from diseased sunflower leaves, eight were studied in some detail. A fluorescent pseudomonad isolated from necrotic tissues and its reisolates belong to group Ia of phytopathogenic pseudomonads which includes Pseudomonas syringae bacterium. A study of host range indicated that the pathogen infects only sunflower but not the other plant species. Based on the pathogenicity study and biochemical and physiological tests, it was concluded that the pathogen belongs to the bacterium Pseudomonas syringae pv. helianthi.     

Modelling mortality risks for treated insects relative to controls

A model is described for facilitating studies of insect mortality. The main feature of the model is that it includes a readily interpretable parameter which measures the mortality risk in each treatment group relative to a control group. Procedures for fitting the model are illustrated by reference to an experiment where leafhoppers were injected with spiroplasma strains; one such strain was shown to be pathogenic. Good fits have been found for data from other experiments.