The species concept as an emergent property of population biology

Resurgent interest in the genetics of population divergence and speciation coincides with recent critical evaluation of species concepts and proposals for species delimitation. An important result of these parallel trends is a slight but important conceptual shift in focus away from species diagnoses based on prior species concepts or definitions, and toward analyses of the processes acting on lineages of metapopulations that eventually lead to differences recognizable as species taxa. An advantage of this approach is that it identifies quantitative metapopulation differences in continuous variables, rather than discrete entities that do or do not conform to a prior species concept, and species taxa are recognized as an emergent property of population-level processes. The tension between species concepts and diagnosis versus emergent recognition of species taxa is at least as old as Darwin, and is unlikely to be resolved soon in favor of either view, because the products of both approaches (discrete utilitarian taxon names for species, process-based understanding of the origins of differentiated metapopulations) continue to have important applications.     

The number of species of rodent coccidia and of other protozoa

About 447 species of coccidia have been named from the 1687 living, known species of rodents; 207 host species, 92 host genera, and 15 host families are represented; this is about 12% of the known species of rodents. About 4600 species of apicomplexan protozoa have been named. Assuming that the same proportion of the total number of apicomplexan species has been named as of the coccidian species, there must actually be about 38,333 species of apicomplexan protozoa. There are 5.4 times as many protozoan genera as of apicomplexan genera. Assuming that the number of species in each genus is the same for all the protozoa as it is for the Apicomplexa, there may actually be 206,998 species of protozoa. This may be too conservative an estimate. Based on other criteria, an estimate of over 20 million species could be made.     

Tree heterogeneity,resource availability,and larger scale processes regulating arboreal ant species richness

Abstract Processes acting on different spatial and temporal scales may influence local species richness. Ant communities are usually described as interactive and therefore determined by local processes. In this paper we tested two hypotheses linked to the question of why there is local variation in arboreal ant species richness in the Brazilian savanna (‘cerrado’). The hypotheses are: (i) there is a positive relationship between ant species richness and tree species richness, used as a surrogate of heterogeneity; and (ii) there is a positive relationship between ant species richness and tree density, used as a surrogate of resource availability. Arboreal ants were sampled in two cerrado sites in Brazil using baited pitfall traps and manual sampling, in quadrats of 20 m × 50 m. Ant species richness in each quadrat was used as the response variable in regression tests, using tree species richness and tree density as explanatory variables. Ant species richness responded positively to tree species richness and density. Sampling site also influenced ant species richness, and the relationship between tree density and tree species richness was also positive and significant. Tree species richness may have influenced ant species richness through three processes: (i) increasing the variety of resources and allowing the existence of a higher number of specialist species; (ii) increasing the amount of resources to generalist species; and (iii) some other unmeasured factor may have influenced both ant and tree species richness. Tree density may also have influenced ant species richness through three processes: (i) increasing the amount of resources and allowing a higher ant species richness; (ii) changing habitat conditions and dominance hierarchies in ant communities; and (iii) increasing the area and causing a species–area pattern. Processes acting on larger scales, such as disturbance, altitude and evolutionary histories, as well as sampling effect may have caused the difference between sites.     

Heterogeneity in dynamic species abundance models: the selective effect of extinction processes

There is often large variation in traits across the species of a community. In particular, variation in life history traits affecting population dynamics is likely to affect the species abundance distribution. Applying a dynamic and heterogeneous species abundance model we study how differences in extinction time for species in a community act as a force changing the distribution of dynamic parameters across species. This process may generate communities that are more heterogeneous then the heterogeneity measured as the species enter the community. Analytical results for some versions of the lognormal and gamma species abundance model are given as exemplifications of this process, together with stochastic simulations demonstrating the temporal changes in number of species and community heterogeneity through time.     

Body size and measurement of species diversity in large grazing mammals

Species are by definition different from each other. This fact favours ranking rather than additive indices. However, ecologists have measured species diversity in terms of species richness, or by combining species richness with the relative abundance of species within an area. Both methods raise problems: species richness treats all species equally, while relative abundance is not a fixed property of species but varies widely temporally and spatially, and requires a massive sampling effort. The functional aspect of species diversity measurement may be strengthened by incorporating differences between species such as body size as a component of diversity. An index of diversity derived from a measure of variation in body size among species is proposed for large grazing mammals. The proposed diversity index related positively to species abundance, indicating that the use of body size as a surrogate for diversity is adequate. Because the proposed index is based on presence or absence data, the expensive and time consuming counting of individuals per species in each sampling unit is not necessary.     

A Preliminary Investigation on the Status of the Wildlife Trade in Guangxi,China

1IntroductionWildlifetradeisamain~mpetustoutilizewildlife.Thechangeinspeciesandvolumein-volvedinthewildlifetrademayreflectconservationstatus,dynamicsandexploitedlevelofwildliferesources.Thestudyonwildlifetradeisthetheoriticalbasisonwhichproposalsastolimittradeonrareorendangeredspeciescanbemade,andwithwhichfuturemonitoringofthetradecanbecompared.Theresultalsocanbeusedtoevaluateconservationeffectsofprotectionmeasuresandlawsforbiodiversityconservation.Itisofgreatsignificanceinguid-ingsustainable…     

The stock of invasive insect species and its economic determinants

Invasions of nonindigenous organisms have long been linked to trade, but the contribution of individual trade pathways remains poorly understood, because species are not observed immediately upon arrival and the number of species arriving annually is unknown. Species interception records may count both new arrivals and species long introduced. Furthermore, the stock of invasive insect species already present is unknown. In this study, a state-space model is used to infer the stock of detected as well as undetected invasive insect species established in the United States. A system of equations is estimated jointly to distinguish the patterns of introduction, identification, and eradication. Introductions of invasive species are modeled as dependent on the volume of trade and arrival of people. Identifications depend on the public efforts at invasive species research, as well as on the established stock of invasive species that remain undetected. Eradications of both detected and undetected invasive species depend on containment and quarantine efforts, as well as on the stock of all established invasive species. These patterns are estimated by fitting the predicted number of invasive species detections to the observed record in the North American Non-Indigenous Arthropod Database. The results indicate that agricultural imports are the most important pathway of introduction, followed by immigration of people. Expenditures by the U.S. Department of Agriculture and the Agricultural Research Service are found to explain the species identification record well. Between three and 38 invasive insect species are estimated to be established in the United States undetected.     

Responses of biotic interactions of dominant and subordinate species to decadal warming and simulated rotational grazing in Tibetan alpine meadow

Warming increases competition among plant species in alpine communities by ameliorating harsh environmental conditions, such as low temperatures. Grazing, as the main human activity, may mitigate the effect of warming, as previously reported. However, it is critical to refine the effects of warming on biotic interactions among species, for example, by taking the competitive ability of species into consideration. Based on a 10-year warming and grazing experiment in a Tibetan alpine meadow, we evaluated interspecific biotic interactions of dominant and subordinate species, using the approach of interspecific spatial associations. Warming significantly increased competition between subordinate and dominant species as well as among subordinate species, but not among dominant species. Moreover, facilitation of dominant-subordinate species also increased under warming. Simulated rotational grazing had similar effects to warming, with increasing interspecific competition. Our results show that, when studying the effects of warming on biotic interactions among species, it is necessary to characterize different species pairs relative to their competitive ability, and that simulated rotational grazing does not mitigate the effects of warming in the long term. Our results also provide evidence that the spatial pattern of species is a critical mechanism in species coexistence.     

Phylogenetic skew: an index of community diversity

The distribution of divergence times between member species of a community reflects the pattern of species composition. In this study, we contrast the species composition of a community against the meta‐community, which we define as the species composition of a set of target communities. We regard the collection of species that comprise a community as a sample from the set of member species of the meta‐community, and interpret the pattern of the community species composition in terms of the type of species sampled from the meta‐community. A newly defined effective species sampling proportion explains the amount of the difference between the divergence time distributions of the community and that of the meta‐community, assuming random sampling. We propose a new index of phylogenetic skew (PS), as the ratio of the maximum‐likelihood estimate of the effective species sampling proportion to the observed sampling proportion. A PS value of 1 is interpreted as random sampling. If the value is >1, the sampling is suspected to be phylogenetically skewed. If it is <1, systematic thinning of species is likely. Unlike other indices, the PS does not depend on species richness as long as the community has more than a few members of a species. Because it is possible to compare partially observed communities, the index may be effectively used in exploratory analysis to detect candidate communities with unique species compositions from a large number of communities.     

The Golden-spectacled Warbler: a complex of sibling species, including a previously undescribed species

The Golden-spectacled Warbler, usually treated as a single species, Seicercus burkii , is widely distributed in mountains of southern Asia. We argue that it should be treated as five different species, one of which is described here for the first time. Two species occur in sympatry in the Himalayas. The other three species are found in eastern Asia, where all three are sympatric in China, and two of these breed sympatrically also in Vietnam. In Burma and adjacent parts of India, one of the Himalayan species is sympatric with one of the east Asian species. We describe differences in morphology, vocalizations, altitudinal distribution and habitat between these five species, as well as results from playback tests, which show that all sympatric taxa differ and appear to be reproductively isolated from each other.     

Species: the concept, category and taxon

The term species by itself is vague because it refers to the species concept, the species category and the species taxon, all of which are distinct although related to one another. The species concept is not primarily a part of systematics, but has always been an integral part of basic biological theory, It is based on evolutionary theory and applies only to sexually reproducing organisms. The species concept and the phyletic lineage concept are quite distinct although they are related to one another. The important aspect of the species concept is lack of gene flow between different species, and hence the defining criterion of the species is genetic isolation. The species concept is often considered as non‐dimensional, both in time and space. Species possess three different major properties, namely genetic isolation, reproductive isolation and ecological isolation; these properties evolve at different times and under the effect of different causes during the speciation process. Speciation requires an external isolating barrier during the initial allopatric phase in which genetic isolation evolves and must reach 100% efficiency. The subsequent sympatric phase of speciation occurs after the disappearance of the external isolating barrier when members of the two newly evolved species can interact with one another and exert mutual selective demands on one another. Much of the reproductive and ecological isolation evolves during this secondary sympatric phase. The species category is a rank in the taxonomic hierarchy and serves as the basis on which the diversity of organisms is described; it is not the same as the species concept. The species category applied to all organisms, sexually and asexually reproducing. The species taxon is the practical application of the species category in systematics with the recognition of species taxa requiring many arbitrary decisions. No single set of rules exist by which the species category can be applied to all organisms. Recognition of species taxa in asexually reproducing organisms is based on amount of variation and gaps in the variation of phenotypic features associated with ecological attributes of these organisms as compared with similar attributes in sympatric species taxa of sexually reproducing organisms. Species taxa are multidimensional in that they exist over space–time and often have fuzzy borders. Because recognition of species taxa, including those in sexually reproducing organisms, depends on many arbitrary decisions especially when dealing with broad geographical and temporal ranges, species taxa cannot be used as the foundation for developing and testing theoretical concepts in evolutionary theory which can only be done with the non‐dimensional species concept.     

秦岭紫堇属植物及其地理分布修订

在室内查阅标本和查阅文献资料的基础上,结合野外实际调查,对秦岭地区紫堇属植物及其地理分布进行全面修订。结果表明:秦岭地区共有紫堇属植物28种,其中5种为秦岭特有种。地理分布格局研究表明:8种为秦岭广布种,7种为秦岭西部分布种,7种为秦岭中部分布种,1种为秦岭东部分布种,3种为秦岭中部和西部分布种,2种为中部和东部分布种。根据修订,给出了秦岭紫堇属植物分种检索表。     

北京湿地维管植物区系研究

记录了分布于北京地区的典型湿地维管植物266种7变种1变型,共274个分类群,隶属于58科144属。从种一级的水平对这274个分类群进行分析,可分为14个分布区类型,其中温带性质的种187种,为整个区系成分的主体,另有世界广布种45种,热带性质的种30种,中国特有种12种。就北京湿地维管植物区系特征而言,其种类组成与华北其他地区湿地存在着相似性,温带成分占优势地位,并存在一些古老孑遗种类及特有种。此外,还对区系成分中的受危种和外来种进行了讨论。     

Phylogeny and biogeography of a large radiation of Andean lizards (Iguania, Stenocercus)

With 61 species occurring mostly in the Andes and adjacent lowland areas, Stenocercus lizards represent one of the most widespread and well-represented Andean vertebrate groups. Phylogenetic relationships among species of Stenocercus are inferred using different datasets based on mitochondrial DNA sequence data of 35 species and morphological data of 59 species. Among morphological data, polymorphic and meristic/morphometric characters are coded under the frequency parsimony and gap-weighting methods, respectively, and the accuracy of these methods is tested. When both types of characters are included, the resulting tree topology is more similar to the topologies obtained from analyses of DNA sequence data than those topologies obtained after exclusion of one or both types of characters. The phylogenetic hypotheses inferred including 59 species of Stenocercus (dataset 1) and excluding those species for which DNA data were not available (dataset 2) are generally congruent with each other, as well as with previously published hypotheses. The most parsimonious tree obtained from analysis of dataset 2 is used in a dispersal-vicariance analysis to infer ancestral areas and major biogeographical events. Species of Stenocercus are divided into two major clades. Clade A has diversified mostly in the central Andes, with a few species in the northern Andes and one species in the southern Andes. Clade B is more widespread, with species in the northern, central, and southern Andes, as well as in the Atlantic lowlands and Amazon basin. The most recent common ancestor of Stenocercus is inferred to have occurred in the eastern cordillera of the central Andes. Given morphological similarity and altitudinal distribution of some species nested in a northern-Andes clade, as well as the relatively recent uplift of this Andean region, it is possible that species in this clade have diverged as recently as the mid-Pliocene.     

Protected species outside the protected areas: People's attitude,threats and conservation of the Yellow Monitor (Varanus flavescens) in the Far-western Lowlands of Nepal

Although there is high potential for conservation of species outside protected areas, it is often neglected in researches and conservation programs. Protected species are legally protected even outside the protected areas and can be flagships for conservation in these areas, but their conservation aspects in these areas are poorly studied. We studied conservation aspects of a poorly known species, Yellow Monitor (Varanus flavescens), which is protected in most of its range countries, outside the protected areas in the Far-western lowlands of Nepal. We studied people's relationship, attitudes and threats to the species through questionnaire survey with adults and children in Parasan Village Development Committee of Kanchanpur District. We found that most of the adults were unaware about the protected status and importance of the species, and both adults as well as children killed the species. The study revealed that most of the killing occurred in agricultural land and children were more responsible for the killing than the adults. We found that monsoon vacation in schools increased the threat to the species. Our study revealed that fear from the species was the main reason and use of the species as food, medicine and hide were other reasons for killing of the species by adults. Low awareness was the major reason behind the killing by children as most of the killing was not related to any good reasons. We estimated that 87 individuals of the species could have been killed in the area in that year. Based on available evidences, we recommend further studies to predict the vulnerability of the species. Our study suggests that raising awareness among locals about its legal status and importance is the simple and efficient measure for the conservation of the species as well as for conserving other protected species outside the protected areas.     

Introduction of a Brachylaima species (Digenea: Brachylaimidae) to Australia

A Brachylaima species recorded previously from the house mouse (Mus domesticus) in South Australia is shown to use the introduced European snails Cernuella virgata and Cochlicella barbara as first intermediate hosts, and the same two species and Theba pisana as second intermediate hosts. The life cycle is typical of Brachylaima species. The parasite is capable of infecting at least two species of native Australian rodent, Rattus fuscipes and Leporillus conditor. Because of the intermediate hosts used, it is hypothesized that this trematode species has been introduced from Europe. The parasite may be conspecific with one of a number of described European species but difficulties with the literature concerning these species have required that the present form be designated only as Brachylaima sp.     

Descriptions and phylogenetic systematics of Myxobolus spp. from cyprinids in Algonquin Park, Ontario

Eight species of Myxobolus were collected from four species of cyprinids in Algonquin Park, Ontario. On the basis of spore morphology, five of these species are described as new and two are redescribed. The evolutionary relationships among these eight species were studied using partial small subunit ribosomal DNA (ssu-rDNA) sequence data. The resulting cladograms, which were highly resolved and with strongly supported relationships, allowed for the evaluation of spore morphology, host specificity, and tissue tropism, criteria traditionally used in species identification. These criteria, recently criticized for creating artificial rather than natural taxonomic groupings, were evaluated for their reliability in the systematics of the species examined. The data showed that distantly related species often infect the same host and tissue, and that closely related species often occur in different hosts. Morphologically similar species are more closely related to each other and the taxonomy based on spore morphology is consistent with the relationships depicted in the phylogenies. These results suggest that spore morphology is better than host specificity and tissue tropism as a species character, as well as for determining evolutionary relationships among the species of Myxobolus examined.