Peptoniphilus coxii sp. nov. and Peptoniphilus tyrrelliae sp. nov. isolated from human clinical infections

Two groups of previously undescribed anaerobic, gram-positive cocci recovered from human clinical infections were characterized using phenotypic and molecular genotypic methods. Comparative genotypic analysis showed that the strains within each of these two groups were homogeneous within the group and that each group was unique within the genus Peptoniphilus. The first group is most closely related to Peptoniphilus ivorii and the second group to Peptoniphilus harei. Based on these findings we propose two novel species, Peptoniphilus coxii sp. nov. and Peptoniphilus tyrrelliae sp. nov. The type strains are P. coxii sp. nov., RMA 16757^T (= JCM 16892^T = CCUG 59622^T = ATCC BAA-2106^T) and P. tyrrelliae sp. nov., RMA 19911^T (= JCM 16893^T = CCUG 59621^T = ATCC BAA-2105^T).     

Clostridium tertium isolated from gas gangrene wound; misidentified as Lactobacillus spp initially due to aerotolerant feature

Clostridium tertium has been increasingly reported as a human pathogen. This organism is an aerotolerant Gram-positive rod that is often mistaken for other organisms, such as Lactobacillus or Bacillus species. We describe a case of a patient with a history of intravenous drug use presenting to UCLA-Olive View Medical Center with gas gangrene of both upper extremities. The organism was initially misidentified as a Lactobacillus species on aerobic culture plates. However, terminal spore formation was detected in this isolate on a sub-cultured anaerobic culture plate and this isolate was confirmed as C. tertium biochemically and genetically by 16S rDNA sequencing. Additional DNA cloning libraries made from the formalin-fixed specimen revealed Peptoniphilus species and an uncultured Clostridium clone, but not C. tertium. C. tertium might be a causative organism of gas-producing myonecrosis but such an association has never been described. Clinicians should be aware of the phenomenon of aerotolerance of some anaerobes and need to clarify the identification of organisms if the clinical picture does not fit the isolated organism.     

In vitro activity of oritavancin (LY333328), vancomycin, clindamycin, and metronidazole against Clostridium perfringens, Propionibacterium acnes, and anaerobic Gram-positive cocci

Using an agar dilution method, we determined the in vitro activity of oritavancin, vancomycin, clindamycin and metronidazole against 114 unique clinical isolates of Gram-positive anaerobes. MIC(90)s (microg/mL) for oritavancin were as follows: Clostridium perfringens 1.0, Propionibacterium acnes 0.25, Peptostreptococcus anaerobius 0.25, Peptoniphilus asaccharolyticus 0.5, Finegoldia magna 0.25, Micromonas. micros 0.25, and Anaerococcus prevotii 0.25. On a weight basis, oritavancin is slightly more active than vancomycin against the strains tested. The oritavancin MICs are comparable to those previously reported against staphylococci and enterococci. Oritavancin shows excellent potential for treatment of infections containing Gram-positive anaerobes such as these.     

四膜虫S1株——上海四膜虫,新种

四膜虫S1是一株自接型四膜虫,根据形态特征应属梨形四膜虫复合种。本种除克隆内接合外,和其它十二种四膜虫均不接合。本种的异柠檬酸脱氢酶,四唑氧化酶,谷氨酸脱氢酶和乙酸酯酶的同功酶谱和其它十二种四膜虫相比,差异明显。此外,金亦石等(1987)所提供的S1和其它十种四膜虫的rDNA分子的四种限制性内切酶图谱也说明,S1株与除T.australis以外的其它九种的酶切图谱是显著不同的。据此,作者认为本种应是梨形四膜虫复合种中一新种,并定名为上海四膜虫。     

我国沿海线形亚属海链藻的形态学研究

壳面孔纹的形态学特征是海链藻的重要分类学依据之一。线形亚属的海链藻种类大多是从圆筛藻属修订而来, 它们之间的区别特征细微, 需电镜下观察才能准确鉴定。我国关于线形亚属海链藻的报道较少。研究利用电镜(EM)技术, 对采自我国沿海海域的自然水样, 以及分离获得的单克隆培养藻株进行了形态学观察, 针对其中的海链藻属Thalassiosira Cleve种类开展了形态分类学的专题研究。报道了6个隶属于线形亚属的海链藻种类, 分别是紧密海链藻T. densannula Hasle &; Fryxell、微小海链藻T. exigua Fryxell &; Hasle、线形海链藻T. lineata Jousé、微线形海链藻T. nanolineata (Mann) Fryxell &; Hasle、结线形海链藻T. nodulolineata (Hendey) Hasle &; Fryxell和柔弱海链藻T. tenera Proschkina-Lavrenko, 其中有4个为我国新记录种类: 紧密海链藻、线形海链藻、微线形海链藻和结线形海链藻。对每个种类的形态学特征、生活习性和生态分布进行了描述, 提供了电镜照片。对相似种类的形态学特征进行了比较研究, 分析了孔纹特征的变化类型及其分类学意义。     

Four novel species of the anamorphic yeast genus Candida found in Thailand and Taiwan

Four strains of yeasts isolated in Thailand and Taiwan were found to represent four distinct novel species of the ascomycetous anamorphic yeast genus Candida. These strains are located in the Clavispora-Metschnikowia clade in a phylogenetic tree based on the D1/D2 domain sequences of the large subunit rRNA genes. Together with Candida picinguabensis and Candida saopaulonensis, the four novel species constitute a well-separated subclade from other species of the Clavispora-Metschnikowia clade. Three species from Thailand are described as Candida bambusicola sp. nov. (type strain, ST-50(T) = BCC 7750(T) = NBRC 106734(T) = CBS 11723(T)), Candida nongkhaiensis sp. nov. (type strain, ST-95(T) = BCC 8331(T) = NBRC 105874(T) =CBS 11724(T)) and Candida succicola sp. nov. (type strain, ST-631(T) = BCC 15314(T) = NBRC 106736(T) = CBS 11726(T)), respectively, and the species from Taiwan is described as Candida touchengensis sp. nov. (type strain, SY4S03(T) = NBRC 102647(T) = BCRC 23097(T) = CBS 10585(T)).     

Aeromonas tecta sp. nov., isolated from clinical and environmental sources

Five Aeromonas strains, isolated from both clinical and environmental sources and characterized by a polyphasic approach, including phylogenetic analysis derived from gyrB, rpoD, and 16S rRNA gene sequencing, as well as DNA-DNA hybridization, extensive biochemical and antibiotic susceptibility tests, were recognized as members of an unknown, or undescribed, Aeromonas species. These "Aeromonas eucrenophila-like" strains were closely related to the species A. eucrenophila and Aeromonas encheleia, but they were negative for indole and acid from glycerol tests. Therefore, based on the results of the phylogenetic analyses and DNA-DNA pairing data of these strains, a novel species of the genus Aeromonas is described, for which the name Aeromonas tecta is proposed with isolate F518(T) (CECT7082(T), DSM17300(T), MDC91(T)) as the type strain.     

中国细长蚁属系统分类研究(膜翅目,蚁科)

在中国记载细长蚁属Tetraponera F. Smith昆虫13种,其中在云南省描述5新种,报道中国1新纪录种.编制了工蚁的分种检索表.评论了该属中国种类的分类历史.13个已知种依次是红黑细长蚁T.rufonigra(Jerdon),凹唇细长蚁T.concava sp.nov.,宾氏细长蚁T.binghami(Forel),狭唇细长蚁T.attenuata F.Smith,显赫细长蚁T.notabilis Ward,光亮细长蚁T.nitida(F.Smith),隆背细长蚁T.convexa sp.nov.,榕细长蚁T.microcarpa Wu et Wang,叉唇细长蚁T.furcata sp.nov.,尖唇细长蚁T.protensa sp.nov.,飘细长蚁T.allaborans(Walker),无缘细长蚁T.amargina sp.nov,平静细长蚁T.modesta(F.Smith).显赫细长蚁T.notabilis Ward为中国新纪录种.     

Taxonomic revision of Tatria Kowalewski, 1904 (Cestoda: Amabiliidae): redescriptions of T. biremis Kowalewski, 1904 and T. minor Kowalewski, 1904, and the description of T. gulyaevi n. sp. from Palaearctic grebes

Two species of Tatria Kowalewski, 1904 are redescribed from grebes in Bulgaria: T. biremis Kowalewski, 1904 (specimens from Podiceps nigricollis) and T. minor Kowalewski, 1904 (specimens from P. cristatus and P. nigricollis). T. mircia Gulyaev, 1990 is synonymised with T. minor. The previous records of T. biremis, T. minor and T. mircia are critically analysed in view of the present results. T. gulyaevi n. sp. is described from P. nigricollis from Bulgaria and the Czech Republic and from an unidentified grebe species from Turkey. Some of the previous records of T. minor and T. biremis are recognised as belonging to T. gulyaevi. One specimen illustrated by Kowalewski (1904) is designated as a lectotype of T. minor in order to stabilise the nomenclatural standing of this species.     

A revision of the genus Trixa Meigen （Diptera： Tachinidae）

The genus Trixa Meigen, 1824 is revised. Dexiotrix Villeneuve, 1936 and Trixella Mesnil, 1980, each of which was sometimes treated as a distinct genus, are treated as junior synonyms of Trixa Meigen. Two species from Sichuan and Yunnan, China, are described as new to science, viz. Trixa chinensis sp. nov. and T. chaoi sp. nov. T. alpina Meigen is treated as a junior synonym of T. caerulescens Meigen. T. nox (Shima) and T.pubiseta (Mesnil) are newly recorded from China. Males of T. pubiseta (Mesnil) and T.longipensis (Villeneuve) are described for the first time. Diagnoses, figures and a key to twelve species in Trixa are given.     

Chromosomal evolution of the Hawaiian Telmatogeton (Chironomidae,Diptera)

It is only in the Hawaiian Islands that species of the otherwise marine genus Telmatogeton have evolved into freshwater. An analysis of polytene chromosomes and karyotypes of two marine species and five freshwater species revealed that paracentric inversions and centric fusions were important in chromosomal evolution. The sequence of polytene chromosome bands common to most species, established as the Telmatogeton standard sequence, is found in a population of T. torrenticola from West Maui. Most species and other populations of T. torrenticola may be derived from the standard sequence by paracentric inversions. Similarities with the standard band sequence places T. japonicus (n=7) rather than T. pacificus (n=4) in the proposed phylogeny as the species closest to the marine ancestor of the freshwater species. One of three species (T. fluviatilis from Oahu, T. torrenticola from West Maui, or an undescribed species from East Maui), each with seven pairs of chromosomes is considered to be closest to the original freshwater species. T. torrenticola is a complex species in which there is an accumulation of fixed inversions and centric fusions in stepwise fashion in populations from west to east (West Maui n=7; East Maui n=6; Kohala Mountains n=5 and Mauna Kea n=4 both from the island of Hawaii). The population of T. torrenticola from Molokai has a reduced chromosome number (n=4) and fixed inversions. T. abnormis and T. hirtus, the only species which exhibit differentiated sex chromosomes, may be derived from the standard sequency by paracentric inversions. T. abnormis (n=4) has a simple XY system and T. hirtus (n=3/4) has a complex XY₁Y₂ system. Unique sequences of bands, differences in staining intensity of puffs and bands, and an inversion form the basis for the differentiation of the various Y-chromosomes in these species.     

Phylogeny, taxonomy, and biogeography of the oriental pitvipers of the genus trimeresurus (reptilia: viperidae: crotalinae): a molecular perspective

Based on sequence variation in 806 bp of the mitochondrial 12S rRNA gene, phylogenetic relationships were inferred for 14 species of Trimeresurus (sensu lato) including all East Asian members. Samples analyzed also included representatives of all assemblages of species that are frequently treated as separate genera except for T. mangshanensis, a type species of the recently described monotypic genus Ermia. Results support some previous accounts chiefly from morphological studies, such as distinct divergence of T. wagleri from the remainder, and monophyly of T. mucrosquamatus, T. flavoviridis, T. jerdonii, T. elegans and T. tokarensis. On the other hand, our results negated a putative close affinity of T. monticola and T. okinavensis, and indicated the sister relationship of the latter with T. gracilis. Phylogenetic relationships revealed in this study suggested that the genus Trimeresurus dispersed into the Ryukyu region at least three times, and that T. flavoviridis and T. tokarensis from the central Ryukyus constitute a relict clade.     

Scanning electron microscope study of epidermal surface of six ectosymbiotic Temnocephala species (Platyhelminthes) from Argentina

The epidermis of six ectosymbiontic Temnocephala species (T. axenos, T. chilensis, T. digitata, T. microdactyla and T. pignalberiae from freshwater crustaceans and T. iheringi from a mollusc) from Argentina examined using scanning electron microscopy revealed characters indicating their relationships with other members of the Platyhelminthes and with the congeneric Australian and New Zealand species. In all species, the whole surface is covered with microvilli and no locomotory cilia were observed. Aggregates of monociliated receptors are on the tentacles of all species and on the ventral surfaces of three. Furthermore, T. axenos and T. chilensis show other ciliated structures interpreted as collar receptors, such as those described for some turbellarian groups (e.g. Proseriata and Rhabdocoela). Two species (T. digitata and T. iheringi) show structures that are probably related to the duo-gland adhesive system.     

Asterotremella meifongana sp. nov. and Asterotremella nantouana sp. nov., two anamorphic basidiomycetous yeasts isolated from soil and mushrooms

Two novel yeast species, Asterotremella meifongana sp. nov. and Asterotremella nantouana sp. nov., belonging to Asterotremellaceae within the Trichosporonales, are proposed to accommodate five strains isolated from Taiwanese samples of soil and basidiocarps during 2006-2007. Sequence analysis of the D1/D2 domains of the large subunit rRNA gene revealed that the two species are phylogenetically closely related to species of the genus Asterotremella, which indicates that they are members of the genus. The two species can be further differentiated from other Asterotremella species based on their internal transcribed spacer sequences, as well as on a few physiological test responses. The type strains are A. meifongana SN4S04(T) (=CBS 11424(T) = BCRC 23196(T)) and A. nantouana SN5S06(T) (=CBS 10890(T) = BCRC 23135(T)).     

Anti-anaerobic activity of serum from patients treated with tigecycline for skin/soft tissue infections

To gain additional data concerning the anti-anaerobic activity of tigecycline in serum, we analyzed blood samples from six patients with a complicated skin/soft tissue infection who were receiving IV tigecycline 50 mg every 12 h. Venous blood samples were obtained after multiple doses of tigecycline at 1, 6 and 12 h after the initiation of a 1 h IV infusion. Sera from these samples were tested to determine serum inhibitory and bactericidal activity over time against 4 anaerobic bacteria (Bacteroides fragilis, Peptoniphilus asaccharolyticus, Prevotella bivia and Finegoldia magna). An analysis of serum titers found that tigecycline exhibited early (1 h) and prolonged (12 h) inhibitory activity against each study isolate. Moreover, it provided bactericidal activity for 12 h against these strains with the exception of F. magna. Tigecycline was found to exhibit antibacterial activity at serum concentrations below the MICs of the anaerobic bacteria tested. This finding further supports that the antimicrobial activity of tigecycline can be greater than that suggested by the free fraction of drug and that serum appears to enhance this antibacterial activity.     

Soils of a Mediterranean hot spot of biodiversity and endemism (Sardinia, Tyrrhenian Islands) are inhabited by pan-European, invasive species of Hypocrea/Trichoderma

We have used a Mediterranean hot spot of biodiversity (the Island of Sardinia) to investigate the impact of abiotic factors on the distribution of species of the common soil fungus Trichoderma . To this end, we isolated 482 strains of Hypocrea / Trichoderma from 15 soils comprising undisturbed and disturbed environments (forest, shrub lands and undisturbed or extensively grazed grass steppes respectively). Isolates were identified at the species level by the oligonucleotide BarCode for Hypocrea / Trichoderma ( TrichO KEY), sequence similarity analysis ( Tricho blast ) and phylogenetic inferences. The majority of the isolates were positively identified as pan-European and/or pan-global Hypocrea / Trichoderma species from sections Trichoderma and Pachybasium , comprising H. lixii/T. harzianum , T. gamsii , T. spirale , T. velutinum , T. hamatum , H. koningii/T. koningii , H. virens/T. virens , T. tomentosum , H. semiorbis , H. viridescens/T. viridescens , H. atroviridis/T. atroviride , T. asperellum , H. koningiopsis/T. koningiopsis and Trichoderma sp. Vd2. Only one isolate represented a new, undescribed species belonging to the Harzianum–Catoptron Clade. Internal transcribed spacer sequence analysis revealed only one potentially endemic internal transcribed spacer 1 allele of T. hamatum . All other species exhibited genotypes that were already found in Eurasia or in other continents. Only few cases of correlation of species occurrence with abiotic factors were recorded. The data suggest a strong reduction of native Hypocrea / Trichoderma diversity, which was replaced by extensive invasion of species from Eurasia, Africa and the Pacific Basin.     

Endothermy in African platypleurine cicadas: the influence of body size and habitat (Hemiptera: Cicadidae)

The platypleurine cicadas have a wide distribution across Africa and southern Asia. We investigate endothermy as a thermoregulatory strategy in 11 South African species from five genera, with comparisons to the lone ectothermic platypleurine we found, in an attempt to ascertain any influence that habitat and/or body size have on the expression of endothermy in the platypleurine cicadas. Field measurements of body temperature (T(b)) show that these animals regulate T(b) through endogenous heat production. Heat production in the laboratory elevated T(b) to the same range as in animals active in the field. Maximum T(b) measured during calling activity when there was no access to solar radiation ranged from 13.2 degrees to 22.3 degrees C above ambient temperature in the five species measured. The mean T(b) during activity without access to solar radiation did not differ from the mean T(b) during diurnal activity. All platypleurines exhibit a unique behavior for cicadas while warming endogenously, a temperature-dependent telescoping pulsation of the abdomen that probably functions in ventilation. Platypleurines generally call from trunks and branches within the canopy and appear to rely on endothermy even when the sun is available to elevate T(b), in contrast to the facultative endothermy exhibited by New World endothermic species. The two exceptions to this generalization we found within the platypleurines are Platypleura wahlbergi and Albanycada albigera, which were the smallest species studied. The small size of P. wahlbergi appears to have altered their thermoregulatory strategy to one of facultative endothermy, whereby they use the sun when it is available to facilitate increases in T(b). Albanycada albigera is the only ectothermic platypleurine we found. The habitat and host plant association of A. albigera appear to have influenced the choice of ectothermy as a thermoregulatory strategy, as the species possesses the metabolic machinery to elevate to the T(b) range observed in the endothermic species. Therefore, size and habitat appear to influence the expression of thermoregulatory strategies in African platypleurine cicadas.     

Trypanosomes infecting cod Gadus morhua L. in the North Atlantic: a resurrection of Trypanosoma pleuronectidium Robertson, 1906 and delimitation of T. murmanense Nikitin, 1927 (emend.), with a review of other trypanosomes from North Atlantic and Mediterranean teleosts

Trypanosomes were isolated from Atlantic cod Gadus morhua L. collected from several fjords in western Norway. Morphological studies showed that the 12 infections studied represented a single species, identified as Trypanosoma pleuronectidium Robertson, 1906 which is resurrected and redescribed. This species is characterised by its body length (57.9 ± 5.4 μm), nearly central nucleus (NI = 1.05 ± 0.12) and relatively short post-kinetoplastic (PK) region (3.2 ± 0.8 μm). T. pleuronectidium is transmitted by the leech Calliobdella nodulifera (Malm). T. murmanense Nikitin, 1927 (emend.) is delimited to a species transmitted by the leech Johanssonia arctica (Johansson). This species is separated from T. pleuronectidium by its attained body length, more anterior nucleus, presence of cytoplasmic refractive granules, adnuclear vacuoles and by a longer PK region. Partial SSU rDNA sequences of T. pleuronectidium and T. murmanense from Norway (1980 nt) diverged by 1.9%. The nominal North Atlantic and Mediterranean trypanosome species are reviewed, and T. flesi Lebailly, 1904, T. bothi Lebailly, 1905 and T. limandae Brumpt & Lebailly, 1904 are considered synonyms of T. platessae Lebailly, 1904. T. triglae senegalensis Ranque, 1973 is not considered conspecific with T. triglae Neumann, 1909, and consequently raised to species status as T. senegalense Ranque, 1973. Some other likely synonymies are discussed. In addition to T. pleuronectidium and T. murmanense, the following marine teleost trypanosomes are provisionally listed as valid species pending further study: T. callionymi Brumpt & Lebailly, 1904; T. cotti Brumpt & Lebailly, 1904; T. delagei Brumpt & Lebailly, 1904; T. dorhni Yakimov, 1911; T. gobii Brumpt & Lebailly, 1904; T. laternae Lebailly, 1904; T. myoxocephali Fantham, Porter & Richardson, 1942; T. platessae Lebailly, 1904; T. scorpaenae Neumann, 1909; T. soleae Laveran & Mesnil, 1901; T. triglae Neumann, 1909; and T. yakimovi Yakimov, 1911.     

Life History Studies on the Genus Trillium (Liliaceae) V. Reproductive Biology and Survivorship of Three Declinate-flowered Species

Absract Three pedicellate-declinate-flowered species of Trillium (Liliaceae), T. vaseyi and T. flexipes , were studied for their life history characteristics, e.g., stage class structures of natural populations and reproductive features, including energy allocation to reproductive activities. The populations structures of all three species showed similar depletion structures characterized by a conspicuous decrease of individuals in the small juvenile stages, as was also observed in pedicellate-erect-flowered Trillium species However, with respect to reproductive characteristics, these three declinate-flowered species showed different features from erect-flowered species, although they belong to the same pedicellate-flowered group. That is, these declinate-flowered Trillium species exhibited low seed setting rates of 30% in T. catesbaei , 45% in T. vaseyi and 34% in T. flexipes , suggesting that they possess different mating systems from erect-flowered species which showed high seed setting rates of 50–90%.