SWET for Secure Water Suppression on Probes with High Quality Factor

Water suppression by selective preirradiation is increasingly difficult to achieve on probeheads with high quality factor because of the opposing forces of radiation damping. Here we show that a simple modification to the WET scheme provides reliable water suppression in aqueous solutions of proteins and peptides with minimal saturation of the H^α protons. The scheme is shown to work also with dilute peptide solutions. It is recommended to maintain the water suppression during the evolution time of COSY experiments by weak selective irradiation that causes only minimal Bloch-Siegert shifts. The new water-suppression scheme suppresses the water magnetization by spatial scrambling. Traditional water suppression by preirradiation is similarly based more on water scrambling due to the radiofrequency inhomogeneity than on relaxation effects.Electronic Supplementary Material Electronic Supplementary material is available for this article at and accessible for authorised users.     

Gradient-enhanced TOCSY experiments with improved sensitivity and solvent suppression

Summary Gradient-enhanced versions of the homonuclear TOCSY experiment are described, with solvent suppression and sensitivity superior to that of a conventional TOCSY experiment. The pulse sequences are constructed by appending a WATERGATE module to a z-filtered TOCSY experiment. Pulsed-field gradients and appropriately phased selective rf pulses are used to maintain precise control of the water magnetization vector. Problems associated with radiation damping and spin-locking of the water magnetization are thus alleviated. The water magnetization is returned to equilibrium prior to each acquisition, which improves water suppression and minimizes signal losses due to saturation transfer.     

Observation of the terminal methyl group in fatty acids of the linolenic series by a new 1H NMR pulse sequence providing spectral editing and solvent suppression. Application to excised frog muscle and rat brain

A new 1H NMR pulse sequence is described that combines water suppression with the selective observation of signals from coupled spin systems. The pulse sequence is easy to set up and compensates for pulse width inhomogeneity in the biological sample. Suppression of the water signal is achieved by pulses that return the water spins to their equilibrium position; spectral editing is based on the J modulation present in spin-echo spectra and its inhibition by coherent decoupling at one of the resonances of the spin system of interest. The pulse sequence, which was designed for 1H NMR spectroscopy of tissue, was tested at 470 MHz on excised frog muscle and rat brain. The lactate methyl resonance of caffeine-treated frog sartorius muscle was observed selectively by irradiation at the position of its alcoholic proton. The terminal methyl signal of linolenic acid, along with other fatty acids of the linolenic series (first double bond in the omega-3 position), was observed selectively by irradiation at the position of its omega-1 methylene group. 1H NMR spectra of rat brain were edited to reveal the terminal methyl of either linolenic series or all other fatty acids. The results suggest that the terminal methyl groups of fatty acids of the linolenic series (mostly docosahexaenoic acid, 22:6) have higher mobility than those of all other fatty acids.     

Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions

Summary A novel approach to tailored selective excitation for the measurement of NMR spectra in non-deuterated aqueous solutions (WATERGATE, WATER suppression by GraAdient-Tailored Excitation) is described. The gradient echo sequence, which effectively combines one selective 180° radiofrequency pulse and two field gradient pulses, achieves highly selective and effective water suppression. This technique is ideally suited for the rapid collection of multi-dimensional data since a single-scan acquisition produces a pure phase NMR spectrum with a perfectly flat baseline, at the highest possible sensitivity. Application to the fast measurement of 2D NOE data of a 2.2. mM solution of a double-stranded DNA fragment in 90% H₂O at 5 °C is presented.     

Broadband method for measuring the ultrasonic absorption spectrum of biological tissues

An apparatus is described which in the frequency range from about 5 to 500 MHz allows the ultrasonic absorption coefficient of biological tissues to be measured with 1% accuracy. This apparatus is based on a pulse transmission method in which a computer-controlled mode of operation is combined with a RF substitution technique. Superheterodyne detection of the transmitted signal, multiple data recording and signal averaging result in a high sensitivity of the measuring method. The apparatus can be also used to analyze the ultrasonic pulse reflected by the sample.     

Metabolomic analysis using optimized NMR and statistical methods

NMR-based metabolomics requires robust automated methodologies, and the accuracy of NMR-based metabolomics data is greatly influenced by the reproducibility of data acquisition and processing methods. Effective water resonance signal suppression and reproducible spectral phasing and baseline traces across series of related samples are crucial for statistical analysis. We assess robustness, repeatability, sensitivity, selectivity, and practicality of commonly used solvent peak suppression methods in the NMR analysis of biofluids with respect to the automated processing of the NMR spectra and the impact of pulse sequence and data processing methods on the sensitivity of pattern recognition and statistical analysis of the metabolite profiles. We introduce two modifications to the excitation sculpting pulse sequence whereby the excitation solvent suppression pulse cascade is preceded by low-power water resonance presaturation pulses during the relaxation delay. Our analysis indicates that combining water presaturation with excitation sculpting water suppression delivers the most reproducible and information-rich NMR spectra of biofluids.     

Determination of the rotational dynamics and pH dependence of the hydrogen exchange rates of the arginine guanidino group using NMR spectroscopy

Summary An improved version of the constant-time HSQC experiment is presented that gives uniform sensitivity over the complete ¹³C bandwidth in ¹³C−¹H correlation experiments without creating artifacts in the methyl and aromatic regions of the spectra. The improvement is achieved by replacing the refocussing ¹³C 180° pulse in the evolution time by a combination of a full-power (22 kHz) hyperbolic secant 180° pulse that inverts and refocusses the entire ¹³C window, immediately followed by a selective 180° pulse on the CO region. Further improvement in signal-to-noise in the aromatic and methyl regions, although less spectacular, is obtained by replacing the other two 180° ¹³C pulses in the INEPT parts of the pulse sequence by full-power hyperbolic secant pulses. Results of simulations and experimental data are presented that demonstrate the excellent performance of the hyperbolic secant pulse for broadband inversion and show that refocussing of transverse magnetization occurs over the same bandwidth, albeit with a ¹³C signal phase that depends quadratically on offset. A further modification, in which one of the selective pulses on the CO region is omitted, is also presented. Implications for other 2D and 3D experiments performed at high fields, where uniform ¹³C inversion and refocussing is desirable, are discussed.     

Sodium interaction with ordered structures in mammalian red blood cells detected by Na-23 double quantum NMR.

Na-23 double and triple quantum filtered NMR spectra of intact dog and human red blood cells were measured with the pulse sequence 90 degrees-tau/2-180 degrees-tau/2-theta degrees-t1-theta degrees-t2(Acq). For theta = 90 degrees the triple quantum filtered spectra exhibited the typical multiple quantum filtered lineshape, characteristic of isotropic media, while the double quantum filtered ones presented a superposition of two signals, whose proportion depended on the creation time tau. This effect is due to the formation of both second and third rank tensors. The formation of the second rank tensor, T21 results from non-zero residual quadrupolar interaction and is related to the anisotropic motion of sodium ions. Measurements of the double quantum filtered spectra with theta = 54.7 degrees enabled the detection of the contribution of T21 exclusively. No residual quadrupolar interaction was detected for sodium in the cytoplasm, while unsealed ghosts displayed the double quantum filtered spectral pattern, similar to that of intact cells. The anisotropy of motion of the sodium at the plasma membrane of mammalian erythrocytes depended on the integrity of the cytoskeleton network. Theoretical analysis of the double quantum filtered spectra gave a value of residual quadrupolar splitting of approximately 20 Hz for intact unsealed ghosts. The data presented prove that double quantum filtering is a sensitive technique for detection of motional anisotropies in biological systems.     

Review of possible modulation-dependent biological effects of radiofrequency fields

The biological effects of modulated radiofrequency (RF) electromagnetic fields have been a subject of debate since early publications more than 30 years ago, suggesting that relatively weak amplitude-modulated RF electromagnetic fields have specific biological effects different from the well-known thermal effects of RF energy. This discussion has been recently activated by the increasing human exposure to RF fields from wireless communication systems. Modulation is used in all wireless communication systems to enable the signal to carry information. A previous review in 1998 indicated that experimental evidence for modulation-specific effects of RF energy is weak. This article reviews recent studies (published after 1998) on the biological effects of modulated RF fields. The focus is on studies that have compared the effects of modulated and unmodulated (continuous wave) RF fields, or compared the effects of different kinds of modulations; studies that used only one type of signal are not included. While the majority of recent studies have reported no modulation-specific effects, there are a few interesting exceptions indicating that there may be specific effects from amplitude-modulated RF fields on the human central nervous system. These findings warrant follow-up studies.     

(17)O NMR of water in ordered environments

Two NMR experiments are designed for selective excitation of spin I=5/2 nuclei that exhibit residual quadrupolar splittings. The I=5/2 Jeener-Broekaert experiment is preferred to the four-quantum filtration experiment as it is shown to be a more sensitive technique in experimental practice. Both techniques are applied to (17)O-enriched water in biological systems. The occurrence of water which displays a residual (17)O quadrupolar splitting is demonstrated for the first time in a model biological system and an excised tissue sample. The resulting (17)O NMR spectra are shown to have the characteristics predicted in computer-simulated I=5/2 NMR spectra.     

Broadband homonuclear chemical shift correlation at high MAS frequencies: a study of tanh/tan adiabatic RF pulse schemes without $${^{{\bf 1}}\hbox{{\bf H}}}$$ decoupling during mixing

At high magic angle spinning (MAS) frequencies the potential of tanh/tan adiabatic RF pulse schemes for ¹³C chemical shift correlation without ¹H decoupling during mixing has been evaluated. It is shown via numerical simulations that a continuous train of adiabatic ¹³C inversion pulses applied at high RF field strengths leads to efficient broadband heteronuclear decoupling. It is demonstrated that this can be exploited effectively for generating through-bond and through-space, including double-quantum, correlation spectra of biological systems at high magnetic fields and spinning speeds with no ¹H decoupling applied during the mixing period. Experiments carried out on a polycrystalline sample of histidine clearly suggest that an improved signal to noise ratio can be realised by eliminating ¹H decoupling during mixing.     

Amplification of radiation damping in a 600-MHz NMR spectrometer: Application to the study of water-protein interactions

Summary A new application of a recently developed electronic radiation-damping (RD) control system is presented. It is possible to amplify radiation damping so as to make the water magnetization return back to its equilibrium direction in a time shorter than the characteristic RD time. Certain types of experiments involving radiation damping as a selective inversion pulse can be significantly improved by this new method. Moreover, amplification of RD is shown to improve water suppression and consequently the dynamics of 2D NOESY experiments on proteins.     

Real-time background suppression during frequency domain lifetime measurements

We describe real time background suppression of autofluorescence from biological samples during frequency domain or phase modulation measurements of intensity decays. For these measurements the samples were excited with a train of light pulses with widths below 1 ps. The detector was gated off for a short time period of 10 to 40 ns during and shortly after the excitation pulse. The reference signal needed for the frequency domain measurement was provided by a long-lifetime reference fluorophore which continues to emit following the off-gating pulse. Both the sample and the reference were measured under identical optical and electronic conditions avoiding the need for correction of the photomultiplier tube signal for the gating sequence. We demonstrate frequency domain background suppression using a mixture of short- and long-lifetime probes and for a long-lifetime probe in human plasma with significant autofluorescence.     

Transmural strain distribution in the blood vessel wall

The transmural distributions of stress and strain at the in vivo state have important implications for the physiology and pathology of the vessel wall. The uniform transmural strain hypothesis was proposed by Takamyzawa and Hayashi (Takamizawa K and Hayashi K. J Biomech 20: 7-17, 1987; Biorheology 25: 555-565, 1988) as describing the state of arteries in vivo. From this hypothesis, they derived the residual stress and strain at the no-load condition and the opening angle at the zero-stress state. However, the experimental evidence cited by Takamyzawa and Hayashi (J Biomech 20: 7-17, 1987; and Biorheology 25: 555-565, 1988) to support this hypothesis was limited to arteries whose opening angles (theta) are <180 degrees. It is well known, however, that theta > 180 degrees do exist in the cardiovascular system. Our hypothesis is that the transmural strain distribution cannot be uniform when theta; is >180 degrees. We present both theoretical and experimental evidence for this hypothesis. Theoretically, we show that the circumferential stretch ratio cannot physically be uniform across the vessel wall when theta; exceeds 180 degrees and the deviation from uniformity will increase with an increase in theta; beyond 180 degrees. Experimentally, we present data on the transmural strain distribution in segments of the porcine aorta and coronary arterial tree. Our data validate the theoretical prediction that the outer strain will exceed the inner strain when theta > 180 degrees. This is the converse of the gradient observed when the residual strain is not taken into account. Although the strain distribution may not be uniform when theta exceeds 180 degrees, the uniformity of stress distribution is still possible because of the composite nature of the blood vessel wall, i.e., the intima-medial layer is stiffer than the adventitial layer. Hence, the larger strain at the adventitia can result in a smaller stress because the adventitia is softer at physiological loading.     

Simulated dynamics of succession in a North American subtropical Prosopis savanna

Abstract. A transition matrix model was used to explore the dynamics, rate and potential extent of changes in landscape vegetation patterns on a southern Texas Prosopis savanna. Transitions between seven vegetation classes were determined for the periods 1941–1960 and 1960–1983 on aerial photographs of three sites. During these periods, the sites were heavily grazed by cattle and were fire-free. Vegetation states assessed in grids of 20 m x 20 m cells superimposed on photographs ranged from grass-dominated to woody plant-dominated. The 1941–1960 period (denoted DRY) was characterized by prolonged drought, whereas annual rainfall during the 1960–1983 period (denoted WET) was typically normal to above-normal. The 1941 landscape consisted of herbaceous zones (6% of cells), woodland (50% of cells) and savanna parkland (44% of cells with grass/woody plant mixtures). The woodland state was the most stable, with probabilities of no change being 0.970 and 0.873 in WET and DRY periods, respectively. The herbaceous state was least stable, with corresponding values of 0.074 and 0.353. Past and future landscape structure was modelled by randomly selecting DRY or WET transitions at 20 year time steps. The model was run under a series of rainfall scenarios where the probability of selecting the WET transition matrix (P[WET]) ranged from 0 (DRY always chosen) to 1 (WET always chosen). Historical records indicate P[WET] has approximated 0.3 to 0.4 in the region. The rate of succession to states of greater woody cover increased as P[WET] increased. Forward simulations based on P[WET] > 0.2 suggest the present landscape is unstable and will develop into a closed-canopy woodland within the next 180 years, assuming the processes operating between 1941 and 1983 continue (e.g. grazing by cattle and lack of fire). Reverse simulations concur with historical observations and projections derived from woody plant growth rates in other studies and suggest that 200 to 300 yr BP these landscapes contained a substantially greater proportion of cells dominated by grassland or grassland with scattered woody plants (43 to 74%) than was present in 1983 (19%). Based upon elapsed time between predicted past and future steady states, succession from open savanna to closed-canopy woodland may occur in ca. 400 to 500 yr for P(WET) ≥ 0.33. Arresting or reversing the projected trend may require changes in climate and/or changes in livestock grazing and land management practices. The approaches employed in this study illustrate how time series maps, aerial photographs and satellite imagery can be analyzed and used to interpret, project and reconstruct local and regional changes in ecosystem structure. Difficulties and limitations associated with the use of Markov chains to model succession are identified and discussed.     

Formation and functional significance of the dark receptive fields of the cat visual cortex

Receptive fields (RFs) of single units in the 17th field of the visual cortex of immobilized cat were investigated under dark adaptation. The mean RF size was equal to 67 degrees and varied from 3 degrees up to 120 degrees. The RFs with centres located near gaze were from 3 degrees up to 120 degrees in dia, but with growth of excentricity the number of small RFs decreased, and in the region of 70 to 100 degrees from gaze only RFs with diameters equal to 100 degrees were found. The shape of "dark" RFs was either ellipsoidal (in most cases) or round. Detector properties (orientational, directional, size and velocity selectivity) of the "dark" RFs were significantly less manifest or absent. Under photopic light adaptation the same units reorganized their RFs to well known sizes and configuration. The hypothesis is discussed of the formation of local detector RF in the visual cortex in light adaptation by selective cortical inhibition which is activated in darkness only slightly. This view is an alternative to the commonly-accepted scheme of local cortical RF formation by the hierarchical and selective excitatory convergence.     

Selective recruitment of the triceps surae muscles with changes in knee angle

The muscles of the triceps surae group are important for performance in most sports and in the performance of activities of daily life. In addition, hypertrophy and balance among these muscles are integral to success in bodybuilding. The purpose of this study was to compare the muscle utilization patterns of the 2 major muscles of the triceps surae group, the soleus (SOL) and gastrocnemius (lateral head = LG and medial head = MG), and the tibialis anterior (TA) as an antagonist muscle to the group. Their electromyographic (EMG) signals were compared during 50 constant external resistance contractions at a level established before the testing session. Eleven experienced subjects contributed data during plantar flexion at 3 different knee angles (90, 135, and 180 degrees ). Both root mean square amplitude and integrated signal analyses of the EMGs revealed that the MG produced significantly greater activity than either the SOL or TA at 180 degrees, whereas the LG was not different from the SOL at any knee angle measured. Data also revealed that the SOL produced less electrical activity at 180 degrees than at the other knee angles, whereas the MG produced greater electrical activity. As would be expected, the TA produced lower EMG values than any of the triceps surae muscles at all angles tested. These data indicate that selective targeting of the SOL and MG is possible through the manipulation of knee angle. This targeting appears to be controlled by the biarticular and monoarticular structures of the MG and SOL, respectively. The LG appears less affected by knee position than the MG. Results suggest that the SOL can be targeted most effectively with the knee flexed at 90 degrees and the MG with the leg fully extended. The LG appears to also be more active at 180 degrees; however, it is not as affected as the MG or SOL by knee angle.     

Biomolecular ligands screening using radiation damping difference WaterLOGSY spectroscopy

Water-ligand observed via gradient spectroscopy (WaterLOGSY) is a widely used nuclear magnetic resonance method for ligand screening. The crucial procedure for the effectiveness of WaterLOGSY is selective excitation of the water resonance. The selective excitation is conventionally achieved by using long selective pulse, which causes partial saturation of the water magnetization leading to reduction of sensitivity, in addition to time consuming and error prone. Therefore, many improvements have been made to enhance the sensitivity and robustness of the method. Here we propose an alternative selective excitation scheme for WaterLOGSY by utilizing radiation damping effect. The pulse scheme starts simply with a hard inversion pulse, instead of selective pulse or pulse train, followed by a pulse field gradient to control the radiation damping effect. The rest parts of the pulse scheme are similar to conventional WaterLOGSY. When the gradient pulse is applied immediately after the inversion pulse, the radiation damping effect is suppressed, and all of the magnetization is inversed. When the gradient pulse and the inversion pulse are about 10–20 ms apart, the radiation damping effect remains active and drives the water magnetization toward +z-axis, resulting in selective non-inversion of the water magnetization. By taking the differences of the spectra obtained under these two conditions, one should get the result of WaterLOGSY. The method is demonstrated to be simple, robust and sensitive for ligand screening.     

Heteronuclear 15N/1H spin echo NMR: an in vitro quantitative analysis of leucine transamination in rat skeletal muscle

Detection of the 15N nucleus in studies of the metabolism of branched-chain amino acids was carried out by recording the 1H nuclear magnetic resonance (NMR) spectrum through the effect of the 15N-1H coupling. The Selective Excitation Unit performed a 90 degrees selective proton pulse to overcome the strong water signal and baseline distorsion. In order to obtain quantitative measurement, the leucine beta protons and the valine (internal reference) beta protons coupled to 15N nucleus were simultaneously detected. This NMR method was tested on muscle homogenate incubated with [15N] leucine (approximately 3 mumoles/g). The supernatant was directly observed by NMR. The sensitivity of this indirect method was found to be far higher than direct observation of the 15N signals by 15N NMR.     

Spin-lattice relaxation times for 13C in isotope-enriched glycine accumulated in frog muscle.

Spin-lattice relaxation times (T1's) of 13C-enriched glycine accumulated in frog muscles were determined at 1 degrees C by the inversion-recovery (180 degrees -tau-90 degree pulse sequence) method and compared with the values obtained in free solution. The value of T1 for the alpha-13C nucleus of glycine in the tissue was 50% of that obtained in free solution. The observed value for T1 in the tissue was not concentration-dependent, and no difference in chemical shift was observed between tissue and free solution. Quantification of the area under the glycine peak suggested that the observed signal represents at least 80% of the intracellular glycine. An average nuclear Overhauser enhancement of 2.83 for intracellular glycine indicates that the relaxation mechanism within the cell is predominantly dipolar, as in free solution. The value of T1 for the 13C' nucleus of glycine in the tissue was 67% of that in a solution of similar concentration. A quantitative analysis of the findings suggests that the observed difference in the value of T1 between tissue and free solution results from a difference in viscosity. The data provide no evidence either for special organization of intracellular water or for glycine binding. It is proposed that intracellular diffusion coefficients may be determined from measurements of 13C T1's of 13C-enriched intracellular solutes.