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1.
It is well accepted that the shape of the dispersal kernel, especially its tail, has a substantial effect on the genetic structure of species. Theory predicts that dispersal by fat‐tailed kernels reshuffles genetic material, and thus, preserves genetic diversity during colonization. Moreover, if efficient long‐distance dispersal is coupled with random colonization, an inverse isolation effect is predicted to develop in which increasing genetic diversity per colonizer is expected with increasing distance from a genetically variable source. By contrast, increasing isolation leads to decreasing genetic diversity when dispersal is via thin‐tailed kernels. Here, we use a well‐established model group for dispersal biology (peat mosses: genus Sphagnum) with a fat‐tailed dispersal kernel, and the natural laboratory of the Stockholm archipelago to study the validity of the inverse isolation hypothesis in spore‐dispersed plants in island colonization. Population genetic structure of three species (Sphagnum fallax, Sphagnum fimbriatum and Sphagnum palustre) with contrasting life histories and ploidy levels were investigated on a set of islands using microsatellites. Our data show (, amova , IBD) that dispersal of the two most abundant species can be well approximated by a random colonization model. We find that genetic diversity per colonizer on islands increases with distance from the mainland for S. fallax and S. fimbriatum. By contrast, S. palustre deviates from this pattern, owing to its restricted distribution in the region, affecting its source pool strength. Therefore, the inverse isolation effect appears to hold in natural populations of peat mosses and, likely, in other organisms with small diaspores. 相似文献
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Francisco Javier Valtuea Mario Fernndez‐Mazuecos Toms Rodríguez‐Riao Josefa Lpez Ana Ortega‐Olivencia 《植物分类学报:英文版》2020,58(4):487-503
Peripheral populations (i.e., those occurring on the edge of a species’ distribution range) can have different origins and genetic characteristics, and they may be critical for the conservation of genetic diversity. We investigated European peripheral populations of Scrophularia arguta, a widespread, annual plant distributed from Arabia to Northwest Africa and Macaronesia. Only two small disjunct population groups of this species occur in Europe, specifically in West‐Central and Southeast Iberia. To disclose the origin of these populations and determine their importance for the conservation of S. arguta genetic diversity, we analyzed DNA sequences from two nuclear and two plastid regions and amplified fragment length polymorphism markers in populations sampled mainly across the western distribution range of the species, and modeled the species distribution under present and late Quaternary conditions. The analyses revealed the presence of three distinct lineages of S. arguta in Europe, as a result of multiple colonization waves at different times in the Quaternary. Two of these lineages, occurring in Southeast Iberia, are the result of more or less recent dispersal from Northwest Africa. In contrast, West‐Central Iberian populations are strongly differentiated from the remaining range of S. arguta and can be considered as peripheral relict populations. Our study is the first to demonstrate the occurrence of at least three colonizations of the European continent from Africa by a native plant species. The diverse histories and genetic makeup of the resulting populations confirm the importance of peripheral populations, and particularly of ancient relict populations, for the conservation of global genetic diversity in widespread species. 相似文献
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Aim Our aim was to reconstruct the spatio‐temporal genetic diversification of Androsace lactea, a widely but disjunctly distributed European mountain plant, to test the hypothesis that its distribution is the result of vicariance, in the late Tertiary or during the Pleistocene, or alternatively of long‐distance dispersal. We also addressed the phylogeographic history of the Alps, emphasizing the role of Pleistocene refugia at their northern margin. Location The central and southern European mountain ranges. Methods We gathered amplified fragment length polymorphism (AFLP) data and plastid DNA sequences from one to four individuals of each of 26 populations spanning the entire distribution area. AFLP data were analysed with Bayesian clustering approaches, neighbour‐joining analysis and NeighbourNet. Plastid sequences were used to depict relationships among haplotypes in a statistical parsimony network, to test for population expansions, and to obtain age estimates in a Bayesian framework. Results The AFLP data suggested that many populations were genetically strongly differentiated. The internal structure, however, was weak, and only two major groups of populations, from the north‐western Alps and adjacent regions and from the easternmost Alps, were supported in the neighbour‐joining analysis. One of the Bayesian clustering approaches differentiated three groups of populations: Northern Alps, easternmost Alps and the remaining distribution area. Eleven closely related plastid haplotypes were found, separated by maximally four mutational steps, resulting in a star‐like parsimony network. None of several estimators suggested statistically significant population expansions. The diversification age was inferred to be (mean/median) 0.135/0.08 Ma (95% highest posterior density interval 0.364–0.006 Ma). Main conclusions We found no evidence that long‐distance dispersal shaped the disjunct distribution range; our data rather favoured a vicariance scenario. However, in contrast to the hypothesis that wide but disjunct distributions are old, we conclude that range fragmentation probably happened in the Late Pleistocene, perhaps during the last glaciation. In the Alps, most populations are at least close to formerly unglaciated areas. Our data support distributional stasis and suggest that important refugia were situated at the north‐eastern, but also at the northern and north‐western edges of the Alps, thereby strengthening the evidence for glacial refugia in this strongly glaciated region. 相似文献
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How to define nativeness in organisms with high dispersal capacities? A comment on Essl et al.
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Essl and colleagues documented worldwide invasion patterns in bryophytes, which so far have been neglected in invasion biology. In the absence of historical evidence, Essl and colleagues used criteria such as anomalous geographical distribution, preference for disturbed habitats, and indirect associations with some means of human transport as criteria to identify aliens. Because bryophytes exhibit high long‐distance dispersal capabilities, disjunct distribution patterns are, however, the rule rather than the exception in the group. In our opinion, none of the previously proposed criteria to characterize aliens can be satisfactorily applied to groups like bryophytes, for which historical and fossil records are extremely scarce. We suggest that, in order to validate the conclusions of Essl and colleagues, further taxonomic and phylogeographical studies are needed. This is especially true for island floras, for which recent critical taxonomic work and updated checklists, which compose the primary source of information for biodiversity, are largely missing. 相似文献
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Alan Cavalcanti da Cunha Karen Mustin Eldo Silva dos Santos Éwerton Wânderson Gonçalves dos Santos Marcelino Carneiro Guedes Helenilza Ferreira Albuquerque Cunha Paulo Cesar Colonna Rosman Leonel da Silveira Lobo Sternberg 《Freshwater Biology》2017,62(10):1721-1729
- The transport of seeds by water, i.e. hydrochory, is a key mechanism of long‐distance dispersal constrained by the attributes of the seed and hydrodynamics. In the freshwater Amazon estuary, river hydrodynamics are influenced by seasonal changes in precipitation and tidal cycles. It is not known to what extent a hydrodynamic model may be able to predict seed dispersal.
- Here we parameterised a simulation model (SisBaHia) to estimate maximum seed dispersal distances per tidal cycle, which were then compared with data from in situ seed dispersal experiments. The study was conducted along a 27‐km stretch of a tributary of the Amazon estuary, using the seeds of a widely distributed riparian tree—Carapa guianensis (Meliaceae).
- Based on the simulation model, maximum potential seed dispersal distance was higher in the rainy season (c. 8.7 km) when compared with the dry season (5.6 km), for one tidal cycle (12 hr). The seeds of C. guianensis were dispersed further during the ebb than flood tide during the rainy season, the period of seed dispersal. Average dispersal distances observed in seed dispersal experiments conducted during the rainy season, and those predicted by SisBaHia for the same period were within the same order of magnitude.
- The results of this study confirm that the period of higher precipitation provides favourable hydrological conditions for hydrochory in the Amazon river‐estuary complex. The fact that the time taken for the tide to fall is longer in relation to the time taken for it to rise also favours the arrival of the seeds in the main channel of the Amazon, thereby increasing the probability of long‐distance dispersal events.
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Joseph B. Pfaller Adam C. Payton Karen A. Bjorndal Alan B. Bolten Stuart F. McDaniel 《Ecology and evolution》2019,9(3):957-974
Population differentiation and diversification depend in large part on the ability and propensity of organisms to successfully disperse. However, our understanding of these processes in organisms with high dispersal ability is biased by the limited genetic resolution offered by traditional genotypic markers. Many neustonic animals disperse not only as pelagic larvae, but also as juveniles and adults while drifting or rafting at the surface of the open ocean. In theory, the heightened dispersal ability of these animals should limit opportunities for species diversification and population differentiation. To test these predictions, we used next‐generation sequencing of genomewide restriction‐site‐associated DNA tags (RADseq) and traditional mitochondrial DNA sequencing, to investigate the species‐level relationships and global population structure of Planes crabs collected from oceanic flotsam and sea turtles. Our results indicate that species diversity in this clade is low—likely three closely related species—with no evidence of cryptic or undescribed species. Moreover, our results indicate weak population differentiation among widely separated aggregations with genetic indices showing only subtle genetic discontinuities across all oceans of the world (RADseq FST = 0.08–0.16). The results of this study provide unprecedented resolution of the systematics and global biogeography of this group and contribute valuable information to our understanding of how theoretical dispersal potential relates to actual population differentiation and diversification among marine organisms. Moreover, these results demonstrate the limitations of single gene analyses and the value of genomic‐level resolution for estimating contemporary population structure in organisms with large, highly connected populations. 相似文献
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Dramatic local population decline brought about by anthropogenic-driven change is an increasingly common threat to biodiversity. Seabird life history traits make them particularly vulnerable to such change; therefore, understanding population connectivity and dispersal dynamics is vital for successful management. Our study used a 357-base pair mitochondrial control region locus sequenced for 103 individuals and 18 nuclear microsatellite loci genotyped for 245 individuals to investigate population structure in the Atlantic and Pacific populations of the pelagic seabird, Leach's storm-petrel Oceanodroma leucorhoa leucorhoa. This species is under intense predation pressure at one regionally important colony on St Kilda, Scotland, where a disparity between population decline and predation rates hints at immigration from other large colonies. AMOVA, F(ST), Φ(ST) and Bayesian cluster analyses revealed no genetic structure among Atlantic colonies (Global Φ(ST) = -0.02 P > 0.05, Global F(ST) = 0.003, P > 0.05, STRUCTURE K = 1), consistent with either contemporary gene flow or strong historical association within the ocean basin. The Pacific and Atlantic populations are genetically distinct (Global Φ(ST) = 0.32 P < 0.0001, Global F(ST) = 0.04, P < 0.0001, STRUCTURE K = 2), but evidence for interocean exchange was found with individual exclusion/assignment and population coalescent analyses. These findings highlight the importance of conserving multiple colonies at a number of different sites and suggest that management of this seabird may be best viewed at an oceanic scale. Moreover, our study provides an illustration of how long-distance movement may ameliorate the potentially deleterious impacts of localized environmental change, although direct measures of dispersal are still required to better understand this process. 相似文献
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Yuki F. Kita Kazuyoshi Hosomichi Shingo Suzuki Hidetoshi Inoko Takashi Shiina Mai Watanabe Ayumi Tanaka Taku Horie Hiroshi Ohizumi Sho Tanaka Toshihide Iwasaki Masao Ota Jerzy K. Kulski 《Marine Mammal Science》2013,29(3):474-496
The biological and genetic structure of common bottlenose dolphins (Tursiops truncatus) that migrate seasonally near Japan remains largely unknown. We investigated the genetic and family structure in a group of 165 common bottlenose dolphins caught off the coast of Japan using mitochondrial DNA (mtDNA) and 20 microsatellite DNA markers. Phylogenetic analysis of the mtDNA control region sequences suggested that the dolphins were related more closely to oceanic types from Chinese waters than other geographic regions. The information on sex, sexual maturation and age together with the genetic markers revealed a strong likelihood for 37 familial relationships related mostly to maternity and an under‐representation of juvenile female offspring. The maternal dolphins had a similar offspring‐birth interval as the coastal types from North Atlantic Ocean, but a slightly younger first‐progeny age. The sex bias in the captured group was particularly marked towards an over‐representation of males among the young and immature dolphins, whereas the mature adults had an equal number of males and females. These results should be useful for future comparative biological, genetic and evolutionary investigations of bottlenose dolphins from the North Pacific Ocean with those from other regions. 相似文献
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GIUSEPPE PAVARESE VALENTINA TRANCHIDA‐LOMBARDO ANNALENA COGONI ANTONIA CRISTAUDO SALVATORE COZZOLINO 《Botanical journal of the Linnean Society. Linnean Society of London》2011,167(4):466-475
Because of the complex geoclimatic dynamics of the Mediterranean basin, resulting from a combination of Tertiary geological processes and Quaternary climatic oscillations, the current species composition of the main continental islands is a mosaic resulting from relative contribution of vicariance, geodispersal and long‐distance dispersal by seed. To help distinguish among the contributions of these different dispersal modes to the orchid species richness on the island of Sardinia, we investigated the genetic structure and phylogeographic relationship of the only Platanthera bifolia var. kuenkelei population on the island. By using plastid DNA sequence variation, we show that this recently discovered population is more closely related to the Tunisian P. bifolia var. kuenkelei than to the geographically closer P. bifolia populations from peninsular Italy. Results from haplotype network construction support the hypothesis that the current distribution of P. bifolia var. kuenkelei (Sardinia and Tunisia) is most likely explained by over‐sea dispersal. However, haplotype diversity and mismatch analysis of this unique Sardinian population suggest that, if a long‐distance dispersal event did occur, it was not recent. More likely, temporarily favourable climatic conditions generated a suitable habitat on the island (also in terms of suitable mycorrhizas and pollinators) and thus a transient opportunity for seedling growth and population establishment of P. bifolia var. kuenkelei from North Africa. © 2011 The Linnean Society of London, Botanical Journal of the Linnean Society, 2011, 167 , 466–475. 相似文献
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Mika Bendiksby Sabrina Mazzoni Marte H. Jørgensen Håkon Holien 《Journal of Biogeography》2014,41(11):2020-2031
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Caetano S Currat M Pennington RT Prado D Excoffier L Naciri Y 《Molecular ecology》2012,21(11):2743-2760
This study puts together genetic data and an approximate bayesian computation (ABC) approach to infer the time at which the tree Geoffroea spinosa colonized the Galápagos Islands. The genetic diversity and differentiation between Peru and Galápagos population samples, estimated using three chloroplast spacers and six microsatellite loci, reveal significant differences between two mainland regions separated by the Andes mountains (Inter Andean vs. Pacific Coast) as well as a significant genetic differentiation of island populations. Microsatellites identify two distinct geographical clusters, the Galápagos and the mainland, and chloroplast markers show a private haplotype in the Galápagos. The nuclear distinctiveness of the Inter Andean populations suggests current restricted pollen flow, but chloroplast points to cross‐Andean dispersals via seeds, indicating that the Andes might not be an effective biogeographical barrier. The ABC analyses clearly point to the colonization of the Galápagos within the last 160 000 years and possibly as recently as 4750 years ago (475 generations). Founder events associated with colonization of the two islands where the species occurs are detected, with Española having been colonized after Floreana. We discuss two nonmutually exclusive possibilities for the colonization of the Galápagos, recent natural dispersal vs. human introduction. 相似文献
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The effect of sex‐biased dispersal on opposite‐sexed spatial genetic structure and inbreeding risk
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Natal sex‐biased dispersal has long been thought to reduce the risk of inbreeding by spatially separating opposite‐sexed kin. Yet, comprehensive and quantitative evaluations of this hypothesis are lacking. In this study, we quantified the effectiveness of sex‐biased dispersal as an inbreeding avoidance strategy by combining spatially explicit simulations and empirical data. We quantified the extent of kin clustering by measuring the degree of spatial autocorrelation among opposite‐sexed individuals (FM structure). This allowed us to systematically explore how the extent of sex‐biased dispersal, generational overlap, and mate searching distance, influenced both kin clustering, and the resulting inbreeding in the absence of complementary inbreeding avoidance strategies. Simulations revealed that when sex‐biased dispersal was limited, positive FM genetic structure developed quickly and increased as the mate searching distance decreased or as generational overlap increased. Interestingly, complete long‐range sex‐biased dispersal did not prevent the development of FM genetic structure when generations overlapped. We found a very strong correlation between FM genetic structure and both FIS under random mating, and pedigree‐based measures of inbreeding. Thus, we show that the detection of FM genetic structure can be a strong indicator of inbreeding risk. Empirical data for two species with different life history strategies yielded patterns congruent with our simulations. Our study illustrates a new application of spatial genetic autocorrelation analysis that offers a framework for quantifying the risk of inbreeding that is easily extendable to other species. Furthermore, our findings provide other researchers with a context for interpreting observed patterns of opposite‐sexed spatial genetic structure. 相似文献
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Recent studies have indicated that long‐distance dispersal by kelp zoospores may play an important role in the colonization of newly exposed rocky habitats and in the recovery of recently disturbed kelp forests. This may be facilitated by the vertical transport of zoospores into the shallower portions of the water column where they are exposed to greater alongshore currents that increase their dispersal potential. However, this vertical transport can also expose them to elevated irradiances and enhanced grazing by zooplankton, both of which negatively impact zoospore survival and settlement. In this study, we used plankton tows to show that zooplankton (mysids) were at least seven times more abundant in the surface waters than near the benthos along the edge of a large kelp forest at the time of our spring sampling. We then used feeding experiments and epifluorescence microscopy to verify that these mysids grazed on kelp zoospores. Finally, we conducted laboratory experiments to show that grazing by these mysids over a 12 h period reduced kelp zoospore settlement by at least 50% relative to treatments without grazing. Together with previous studies that have revealed the impacts of high irradiance on zoospore survival and settlement, our study indicates that the vertical transport of kelp zoospores into the shallower portions of the water can also expose them to significantly increased mortality from mysid grazing. Thus, if these patterns are consistent over broader temporal and geographic scales, vertical transport may not be a viable method for sustained long‐distance zoospore dispersal. 相似文献
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Kevin J. Olival Alice Latinne Ariful Islam Jonathan H. Epstein Rebecca Hersch Rachel C. Engstrand Emily S. Gurley George Amato Stephen P. Luby Peter Daszak 《Molecular ecology》2020,29(5):970-985
The structure and connectivity of wildlife host populations may influence zoonotic disease dynamics, evolution and therefore spillover risk to people. Fruit bats in the genus Pteropus, or flying foxes, are the primary natural reservoir for henipaviruses—a group of emerging paramyxoviruses that threaten livestock and public health. In Bangladesh, Pteropus medius is the reservoir for Nipah virus—and viral spillover has led to human fatalities nearly every year since 2001. Here, we use mitochondrial DNA and nuclear microsatellite markers to measure the population structure, demographic history and phylogeography of P. medius in Bangladesh. We combine this with a phylogeographic analysis of all known Nipah virus sequences and strains currently available to better inform the dynamics, distribution and evolutionary history of Nipah virus. We show that P. medius is primarily panmictic, but combined analysis of microsatellite and morphological data shows evidence for differentiation of two populations in eastern Bangladesh, corresponding to a divergent strain of Nipah virus also found in bats from eastern Bangladesh. Our demographic analyses indicate that a large, expanding population of flying foxes has existed in Bangladesh since the Late Pleistocene, coinciding with human population expansion in South Asia, suggesting repeated historical spillover of Nipah virus likely occurred. We present the first evidence of mitochondrial introgression, or hybridization, between P. medius and flying fox species found in South‐East Asia (P. vampyrus and P. hypomelanus), which may help to explain the distribution of Nipah virus strains across the region. 相似文献
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Terezie Mandáková Milan Pouch Klára Harmanová Shing Hei Zhan Itay Mayrose Martin A. Lysak 《Molecular ecology》2017,26(22):6445-6462
Hybridization and genome doubling (allopolyploidy) have led to evolutionary novelties as well as to the origin of new clades and species. Despite the importance of allopolyploidization, the dynamics of postpolyploid diploidization (PPD) at the genome level has been only sparsely studied. The Microlepidieae (MICR) is a crucifer tribe of 17 genera and c. 56 species endemic to Australia and New Zealand. Our phylogenetic and cytogenomic analyses revealed that MICR originated via an intertribal hybridization between ancestors of Crucihimalayeae (n = 8; maternal genome) and Smelowskieae (n = 7; paternal genome), both native to the Northern Hemisphere. The reconstructed ancestral allopolyploid genome (n = 15) originated probably in northeastern Asia or western North America during the Late Miocene (c. 10.6–7 million years ago) and reached the Australian mainland via long‐distance dispersal. In Australia, the allotetraploid genome diverged into at least three main subclades exhibiting different levels of PPD and diversity: 1.25‐fold descending dysploidy (DD) of n = 15 → n = 12 (autopolyploidy → 24) in perennial Arabidella (3 species), 1.5‐fold DD of n = 15 → n = 10 in the perennial Pachycladon (11 spp.) and 2.1–3.75‐fold DD of n = 15 → n = 7–4 in the largely annual crown‐group genera (42 spp. in 15 genera). These results are among the first to demonstrate multispeed genome evolution in taxa descending from a common allopolyploid ancestor. It is suggested that clade‐specific PPD can operate at different rates and efficacies and can be tentatively linked to life histories and the extent of taxonomic diversity. 相似文献
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Xin‐Yi Guo Kun Wang Da‐Fu Ru Dmitry A. German Elizabeth A. Weretilnyk Richard J. Abbott Martin Lascoux Jian‐quan Liu 《Molecular ecology》2018,27(14):2943-2955
The halophyte model plant Eutrema salsugineum (Brassicaceae) disjunctly occurs in temperate to subarctic Asia and North America. This vast, yet extremely discontinuous distribution constitutes an ideal system to examine long‐distance dispersal and the ensuing accumulation of deleterious mutations as expected in expanding populations of selfing plants. In this study, we resequenced individuals from 23 populations across the range of E. salsugineum. Our population genomic data indicate that E. salsugineum migrated “out of the Altai region” at least three times to colonize northern China, northeast Russia and western China. It then expanded its distribution into North America independently from northeast Russia and northern China, respectively. The species colonized northern China around 33.7 thousand years ago (kya) and underwent a considerable expansion in range size approximately 7–8 kya. The western China lineage is likely a hybrid derivative of the northern China and Altai lineages, originating approximately 25–30 kya. Deleterious alleles accumulated in a stepwise manner from (a) Altai to northern China and North America and (b) Altai to northeast Russia and North America. In summary, E. salsugineum dispersed from Asia to North America and deleterious mutations accumulated in a stepwise manner during the expansion of the species’ distribution. 相似文献
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Long‐distance dispersal is an integral part of plant species migration and population development. We aged and genotyped 1125 individuals in four disjunct populations of Pinus ponderosa that were initially established by long‐distance dispersal in the 16th and 17th centuries. Parentage analysis was used to determine if individuals were the product of local reproductive events (two parents present), long‐distance pollen dispersal (one parent present) or long‐distance seed dispersal (no parents present). All individuals established in the first century at each site were the result of long‐distance dispersal. Individuals reproduced at younger ages with increasing age of the overall population. These results suggest Allee effects, where populations were initially unable to expand on their own, and were dependent on long‐distance dispersal to overcome a minimum‐size threshold. Our results demonstrate that long‐distance dispersal was not only necessary for initial colonisation but also to sustain subsequent population growth during early phases of expansion. 相似文献