Kinetics of cold inactivation and heat reactivation of the ribulose diphosphate carboxylase activity of crystalline Fraction I proteins isolated from different species and hybrids of Nicotiana

The maximum specific ribulose diphosphate carboxylase activityof crystalline Fraction I proteins isolated from 8 species,and 12 reciprocal, interspecific, F₁ hybrids of Nicotiana changedto minimum specific activity between 16 and 20 hr after theenzymes at 25?C were placed in ice baths. The minimum statewas preserved for more than one year without further changewhen crystals of enzymes were suspended in buffer at 0?C. Atany time during cold storage, the maximum state of specificactivity could be regained by dissolving the crystals in buffercontaining NaCl and heating the solution at temperatures upto 50?C. Maximum activity was attained by heating at 50?C for20 min whereas more than 100 hr was required at 25?C. An equilibrium was demonstrated between maximally active andminimally active enzyme molecules. The equilibrium constantwas a function of the storage temperatures between 0? and 25?C.The molar enthalpy, H, separating maximally active from minimallyactive enzyme molecules was 3.75?0.1 kcal/mole, an energy differenceconsistent with previous findings that the change in specificactivity did not result from dissociation of subunits or depolymerizationof aggregates. The effect of cold storage of Nicotiana enzyme would seem tooffer a molecular basis for explaining the effect of cold temperatureson photosynthetic CO₂ fixation by winter wheat leaves whichwas shown by Sawada and Miyachi (5) to produce an accumulationof ribulose 1–5 diphosphate and diversion of the normalpath of photosynthetic CO₂ fixation away from phosphoglycericacid to the appearance of fixed carbon in serine and glycineby the glycolate path. (Received October 22, 1973; )     

Properties of ribulose diphosphate carboxylase immobilized on porous glass

Ribulose-1,5-diphosphate carboxylase from spinach has been bound to arylamine porous glass with a diazo linkage and to alklamine porous glass with glutaraldehyde. Stability at elevated temperatures and responses to changes of pH and ribulose-1,5-diphosphate, Mg²⁺, and dithiothreitol concentrations were not significantly different from the soluble enzyme, though stability at 4°C was somewhat improved.     

Crystalline ribulose bisphosphate carboxylase/oxygenase of high integrity and catalytic activity from Nicotiana tabacum

Crystalline tobacco (Nicotiana tabacum L.) ribulose-1,5-bisphosphate carboxylase/oxygenase (EC 4.1.1.39) was prepared using a procedure which protected the enzyme from hydrolysis by endogenous proteases. Leaves were extracted in a buffered medium containing casein, leupeptin, and high concentrations of MgSO4 and NaHCO3. After filtration through ion-exchange resin to remove contaminants, the enzyme was concentrated by precipitation with polyethylene glycol and crystal formation was induced by low-salt dialysis. The crystalline enzyme had a measured specific activity of 1.7 mumol CO2 mg protein-1 min-1, and about 93% of the enzyme could be activated with Mg2+ and CO2. Crystalline enzyme prepared in the absence of casein exhibited an activity which was only one-third of this rate and only about 70% of the enzyme could be activated with Mg2+ and CO2. Casein-extracted enzyme was resolved into distinct bands corresponding to the large (55,000) and small (14,000) subunits by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. The large subunit of enzyme prepared according to the latter procedure was found to be composed of five different polypeptides of slightly decreasing molecular weight. Only about one-third of the large subunits were of the 55,000 molecular weight type. No differences between the two preparations were observed in the Km (CO2) and apparent Km (ribulose bisphosphate).     

Microenvironmental manipulation of the observed michaelis constant of ribulose diphosphate carboxylase

Urease and ribulose 1, 5-diphosphate carboxylase can be bound to Sepharose to give an immobilized two-enzyme system which catalyzes the reaction urea → H₂CO₃ → phosphoglyceric acid. The observed Km of the system for urea approaches the lower value for urease when carboxylase levels on the gel exceed urease levels. If a similar system operates in the chloroplast, the high Km (H₂CO₃) of ribulose 1,5-diphosphate carboxylase may not be metabolically significant.     

Evolutionary divergence in the two kinds of subunits of ribulose diphosphate carboxylase isolated from different species ofNicotiana

A ² analysis was made of previously reported values for the amino acid composition of the large and small subunits of ribulose diphosphate carboxylase (E.C. 4, 1, 1, 39) isolated from five species ofNicotiana. The distributions of these values were then compared with published values for hemoglobin chains and cytochromec's of diverse origins. It was concluded that evolutionary diversity in the large and small subunits of RuDP carboxylase occurs even within the limited taxonomic category of the genusNicotiana. The large subunit was as stable towards mutation during evolution as the chains and cytochromes, whereas the small subunit was much less stable. The hypothesis is discussed that the large subunit played a more significant role than the small subunit in the enzyme function and/or structural integrity of the oligomeric protein. It was also speculated that the addition of small subunits to the molecule, which may have been a recent evolutionary event, enables the fixation of many evolutionarily favorable mutations. Thus, survival of the enzymatic activity in changing environments is favored.     

Effect of abscisic acid on differentiation and ribulose diphosphate carboxylase of chloroplasts

Daucus carota tissues were grown on Murashige-Skoog medium (MS)at different concentrations with abscisic acid (ABA). Sevenbands of chloroplast fractions were obtained on a sucrose gradient.At 10^–5M, ABA highly increased chlorophyll and proteinnitrogen content of medium density chloroplasts. With increasingage of the tissues, the most active chloroplasts according totheir ¹⁴CO₂ fixation were found in smaller numbers. When treatedwith 10^–5 M ABA, 34 day-old tissues cultivated in vitroshowed the chloroplast pattern of 110 day-old tissues. The effectof ABA—given to the tissues during a short pretreatmentor continuously present in the culture medium—on the ribulosediphosphate carboxylase activity was analysed. It was foundthat ABA at 10^–5 M strongly inhibited ¹⁴CO₂ fixation. (Received December 20, 1977; )     

In vitro synthesis of the large subunit of ribulose diphosphate carboxylase on 70 S ribosomes

Polyribosomes isolated from greening barley leaves were active in directing protein synthesis, using soluble components isolated from Escherichia coli. A peptide of 55,000 molecular weight was a major product of translation activity. This peptide was precipitated by antibody to ribulose 1,5-diphosphate carboxylase (RuDPCase) and comigrated with the large subunit of RuDPCase on sodium dodecyl sulfate-polyacrylamide gels. Cyanogen bromide peptides of the peptide of 55,000 molecular weight also corresponded to the peptides prepared from authentic RuDPCase large subunit. The peptides synthesized were shown by sucrose density gradient sedimentation to be largely associated with 70 S ribosomes.     

Studies on a conformational change of tobacco ribulose diphosphate carboxylase induced by D-ribulose-1,5-diphosphate

In the presence of d-ribulose diphosphate, crystalline ribulose diphosphate carboxylase from Nicotiana tabacum leaves undergoes a profound change in solubility. The solubility change did not involve a Conformational change in molecular volume exceeding 2% as measured by sedimentation velocity suggesting no gross change in quaternary structure. However, the change in solubility did involve a tertiary structural change wherein some previously buried tyrosyl and tryptophyl residues became exposed, as indicated by difference spectrophotometry. Although the enzyme molecule has 8 binding sites for ribulose diphosphate, the Conformational change is complete after 4 substrate molecules are bound. A cooperative action among the subunits is proposed.     

A steady-state kinetic study on the catalytic mechanism of ribulose bisphosphate carboxylase from soybean

The catalytic mechanism of soybean ribulose bisphosphate carboxylase was examined, through a study of the steady-state kinetic behavior of the fully activated enzyme using short time assays. The effects of substrates, products, alternative products, and two dead-end inhibitors were investigated. High concentrations of both substrates were observed to lead to nonhyperbolic relationships: concentrations of bicarbonate greater than 15 mm inhibited and concentrations of ribulose bisphosphate greater than 0.2–0.5 mm stimulated enzyme activity over that expected from a hyperbolic fit to the data. The kinetic patterns obtained and the nonhyperbolic behavior of substrates are interpreted to suggest that the binding of substrates and the release of products follow a steady-state random mechanism. The substrate activation by ribulose bisphosphate is likely to be physiologically significant.     

Farnesyl diphosphate synthase. Altering the catalytic site to select for geranyl diphosphate activity

Farnesyl diphosphate synthase (FPPase) catalyzes chain elongation of the C(5) substrate dimethylallyl diphosphate (DMAPP) to the C(15) product farnesyl diphosphate (FPP) by addition of two molecules of isopentenyl diphosphate (IPP). The synthesis of FPP proceeds in two steps, where the C(10) product of the first addition, geranyl diphosphate (GPP), is the substrate for the second addition. The product selectivity of avian FPPase was altered to favor synthesis of GPP by site-directed mutagenesis of residues that form the binding pocket for the hydrocarbon residue of the allylic substrate. Amino acid substitutions that reduced the size of the binding pocket were identified by molecular modeling. FPPase mutants containing seven promising modifications were constructed. Initial screens using DMAPP and GPP as substrates indicated that two of the substitutions, A116W and N144'W, strongly discriminated against binding of GPP to the allylic site. These observations were confirmed by an analysis of the products from reactions with DMAPP in the presence of excess IPP and by comparing the steady-state kinetic constants for the wild-type enzyme and the A116W and N114W mutants.