The testate amoebae of New Zealand: A checklist,identification key and assessment of biogeographic patterns

New Zealand (NZ) is a well-known hotspot of biodiversity and endemism for macroscopic organisms, but its microbial diversity is comparatively poorly documented. We assembled all records on NZ testate amoebae published since the early 20th century and present a comprehensive taxonomic checklist for NZ. Testate amoebae are reported from six major habitat types across both the North and South Islands of NZ, but the sampling effort is ecologically and geographically biased in favour of wetlands and the South Island. As a result, 93% of all 128 morphotypes recorded in NZ occur in wetlands, 28% are restricted to the South Island, and diversity is greater at higher latitudes. Around 50% of morphotypes have a broad latitudinal distribution across the NZ mainland, whereas 15% have narrow latitudinal ranges. Future research should aim to broaden the geographical and ecological ranges. We predict that our list of NZ testate amoebae will expand substantially with future work, and that the latitudinal diversity gradient will be inverted. We also introduce an interactive, fully illustrated, online Lucid key for the rapid identification of NZ testate amoebae. As many morphospecies are cosmopolitan, this key provides a useful tool for testate amoebae identification in other parts of the world.     

Testate Amoeba (Arcellinida,Euglyphida) Ecology along a Poor‐Rich Gradient in Fens of Western Poland

We investigated the relationships between testate amoebae (Arcellinida, Euglyphida), vegetation and water chemistry along environmental gradients in minerotrophic peatlands (fens) in western Poland. We hypothesized that: a) hydrochemistry significantly influences structure of testate amoeba communities, and b) testate amoeba communities are more closely correlated with the hydrochemical variables (environment) than with the vegetation data. Testate amoeba communities and vegetation from 71 sample plots were investigated together with the hydro‐chemistry and hydrology based on 16 environmental variables and vegetation composition. Testate amoeba communities revealed a distinctive poor‐rich gradient in analysed fens. Mineral‐rich habitats, which were dominated by brown mosses, were preferred by a higher number of taxa than acidic habitats, which were dominated by Sphagnum. We recorded a total of 107 testate amoebae taxa. The average species richness of testate amoebae for brown mosses was higher (20) than for Sphagnum (13). We found that testate amoebae communities were similarly correlated with vascular plants, mosses and environmental parameters. Results of direct ordination demonstrate that hydrology, pH, Mg²⁺ and sodium remain the most important environmental control for the entire data set. CCA showed that in case of brown mosses hydrology, sodium and oxygen affect testate amoeba communities significantly whereas in Sphagnum only sodium emerge as most significant determining testate amoeba assemblages. (© 2011 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

Biogeography of testate amoebae in the soils of Mexico

We studied testate amoebae (testates) in the soils of coniferous and deciduous forests and in the wetland and aquatic habitats of Mexico. In 141 samples we found 205 taxa identified to the species or intraspecies level and 68 testate amoebae, which could not be identified to the species level. The highest species diversity of testates was found in the soils of the tropical rainforest (126 species and intraspecific taxa, including spp.) and in tropical wetlands (144 species and intraspecific taxa, including spp.). The study documented testate amoebae with a limited geographical distribution (genera Centropyxis, Cornuapyxis, Ellipsopyxis, Hoogenraadia, Planhoogenraadia, Apolimia, Certesella, Apodera, and Alocodera). We found that testate amoebae in the soils of Mexico had a high level of polymorphism and individual variability. We discuss the value of soil testate amoebae for defining biogeographical regions of Mexico.     

What is the upper size limit for cosmopolitan distribution in free‐living microorganisms?

A comparison of testate amoebae assemblages from the Arctic and Antarctic (areas of similar habitat a maximum distance apart) is used to try and answer the question ‘What is the upper size limit for cosmopolitan distribution in free‐living microbes?’ Species restricted to either the Arctic or Antarctic exhibited sizes up to 230 μm while the largest cosmopolitan species was 135 μm in size. Comparison of the testate assemblages using a multivariate classificatory technique (TWINSPAN ) also suggested more restricted distribution for the larger species. There was a negative relationship between species size and number of sites at which it was recorded (r_s=?0.261, P < 0.05), with all the more widespread species having a size of below 100 μm. It is suggested that for testate amoebae cosmopolitan distributions become common below 100–150 μm. This suggests that most species of testate (indeed most free‐living microbes) have low species richness because of lack of opportunities for allopatric speciation as most are below 100 μm and so geographical isolation is unlikely. It is suggested that if this is correct, only the largest free‐living microbes (> 150 μm) are likely to be of conservation concern because of their smaller ranges. However, I point out that currently different studies are giving very different answers to the question, how ubiquitous and species rich are free‐living microbes? The subject requires further work to try and reconcile these different results.     

Fossil amoebae (Hemiarcherellidae fam. nov.) from Albian (Cretaceous) amber of France

Abstract: Two extraordinarily well‐preserved testate amoebae are described from Late Albian age amber from south‐western France. The specimens are attributed to a new family, the Hemiarcherellidae fam. nov., and are described as Hemiarcherella christellae gen. et sp. nov. The amoebae described herein originate from highly fossiliferous amber pieces. Based on syninclusions, Hemiarcherella christellae was a soil‐dwelling organism, probably an active bacterivore. This taxon represents the third species of testate amoebae described from mid‐Cretaceous French amber. Analysis of this fossil amoeba fauna illustrates the uniqueness of mid‐Cretaceous French amber deposits. Indeed, most amoebae found in amber have been assigned to modern species, corroborating the hypothesis of morphological stasis in different microbial lineages. However, the well‐preserved amoebae fauna found in French amber can be distinguished clearly from modern species and help us to better understand the fossil record of these organisms.     

Relationship Between Testate Amoeba (Protist) Communities and Atmospheric Heavy Metals Accumulated in <Emphasis Type="Italic">Barbula indica</Emphasis> (Bryophyta) in Vietnam

We studied the relationships between testate amoeba communities and heavy metal (Pb, Cd, Zn, Ni, Cu, Mn, and Fe) concentrations in the moss Barbula indica sampled at 29 sites in and around the city of Hanoi (Vietnam). Our first approach was to compare the heavy metal concentrations and testate amoeba variables between the city (zone 1) and the surrounding (zone 2). Mean moss concentrations of Pb, Cd, Zn, Ni, and Cu were significantly higher and testate amoeba species richness and abundance were significantly lower in zone 1 and the abundance of eight taxa differed significantly between the two zones. We then studied the correlation between heavy metals and testate amoebae. Species richness and abundance were correlated negatively to Pb concentration. Shannon H′ was negatively correlated to both Pb and Cd. The abundance of several species was negatively correlated with Pb, Cd, Zn, and Ni; however, at the community level, Pb emerged as the only significant variable in a redundancy analysis. Our results suggest that testate amoebae are sensitive to and may be good bioindicators for heavy metal pollution, especially lead. Further research is needed to understand the causal relationships underlying the observed patterns.     

Is There a Size Limit for Cosmopolitan Distribution in Free-Living Microorganisms? A Biogeographical Analysis of Testate Amoebae from Polar Areas

A long-standing debate in microbial ecology is the extent to which free-living microorganisms exhibit cosmopolitan distributions. We use a comparison of testate amoebae communities in cold “polar” locations (Arctic, Antarctic, and Tibet) to investigate how a microorganism’s size affects its probability of having a cosmopolitan distribution. We show that the probability a given taxa being reported in all three locations increases as testate size decreases. Likewise, excluding those testates found only in Tibet, very small testates (<20 μm) are more likely to occur in both the Arctic and Antarctic than in either of these poles alone. Attempting to correct for phylogeny reduces the number of statistically significant relationships—both because of decreased sample size and potentially real phylogenetic patterns, although some size-dependent effects were still apparent. In particular, taxa found in both the Arctic and Antarctic poles were significantly smaller than congeneric taxa found only in Tibet. This pattern may in part be due to habitat effects, with the Tibetan samples being more likely to have come from aquatic sites which may be more suitable for larger taxa. Overall, our analysis suggests that, at least within testate amoebae, a cosmopolitan distribution becomes increasingly common as median taxon size decreases.     

The Ecology of Testate Amoebae (Protists) in Sphagnum in North-western Poland in Relation to Peatland Ecology

We studied the relationship between testate amoebae (Protozoa) communities and the depth to the water table (DWT), pH, conductivity, and microhabitat type in Sphagnum dominated peatlands of north-western Poland and built predictive (transfer function) models for inferring DWT and pH based on the testate amoebae community structure. Such models can be used for peatland monitoring and paleoecology. A total of 52 testate amoebae taxa were recorded. In a redundancy analysis, DWT and pH explained 20.1% of the variation in the species data and allowed us to identify three groups of taxa: species that are associated with (1) high DWT and low pH, (2) low DWT and low pH, and (3) high pH and mid-range DWT. Our transfer function models allow DWT and pH to be estimated with mean errors of 9.89 cm and 0.71 pH units. The prediction error of the DWT model and the tolerance of the species both increase with increasing dryness. This pattern mirrors the ecology of Sphagnum mosses: Species growing in wet habitats are more sensitive to change in water table depth than the species growing in drier microhabitats. Our results are consistent with studies of testate amoeba ecology in other regions, and they provide additional support for the use of these organisms in paleoecological and biomonitoring contexts.     

Biogeography and comparative ecology of testate amoebae inhabiting Sphagnum-dominated peatlands in the Great Lakes and Rocky Mountain regions of North America

Testate amoebae (Protozoa: Rhizopoda) are common inhabitants of peatlands. Strong relationships between community composition and substrate moisture in Sphagnum‐dominated peatlands have made them particularly useful as hydrological proxies in environmental and palaeoenvironmental research. However, stability of these relationships in geographical space is important for widespread applicability. In this study, we compared testate amoeba communities inhabiting Sphagnum‐dominated peatlands of the Great Lakes and Rocky Mountain regions of North America. Our primary objectives were to describe patterns of community composition in the two regions, develop hypotheses to explain differences, and determine if taxa occupy similar ecological niches with respect to substrate moisture in both places. Our results indicated that testate amoeba communities are relatively different in the two regions, and these differences are probably caused by differences in climate and peatland trophic status, although other factors may also play a role. However, many taxa do occur in both regions and these taxa had comparable moisture preferences in each region, suggesting that the ecological niches of taxa with respect to substrate moisture are similar even within communities of relatively different composition.     

Morphology, Biometry, and Taxonomy of Freshwater and Marine Interstitial Cyphoderia (Cercozoa: Euglyphida)

ABSTRACT. Good taxonomy is essential for ecological, biogeographical, and evolutionary studies of any group of organisms. Therefore, we performed detailed light- and scanning electron microscopy investigations on the shell ultrastructure and biometric analyses of the morphometric variability of five freshwater and marine interstitial testate amoebae of the genus Cyphoderia ( C. trochus var. amphoralis, C. ampulla, C. margaritacea var. major, C. compressa , and C. littoralis ), isolated from different populations in Bulgaria and Switzerland. Our aims were (1) to clarify the morphological characteristics of these taxa, and (2) to compare the morphology of a given taxon ( C. ampulla ) among different locations in Bulgaria and Switzerland as a first step towards an assessment of the geographical variation within a supposedly cosmopolitan taxon. Four of the studied taxa are characterized by a well-expressed main-size class and by a small size range of all the characters and can be defined as size-monomorphic species. Based on these results, the following systematic changes are proposed: C. major ( Penard, 1891 ) n. comb. (Syn.: C. margaritacea var. major ( Penard, 1891 ) and C. amphoralis ( Wailes & Penard, 1911 ) n. comb. (Syn.: C. trochus var. amphoralis ( Wailes & Penard, 1911 )). However, we also show significant morphological variability between the Swiss and Bulgarian populations of C. ampulla , suggesting the possible existence of more than one taxon within this species. Further studies are required to assess (1) if these two morphologically different taxa represent individual species, (2) if so, if more species exist, and if this diversity is due to limited distribution ranges (endemism) or if several closely related taxa occur together in different geographical areas.     

Assessing the ecological value of small testate amoebae (<45 μm) in New Zealand peatlands

Methodological advances are essential for robust ecological research. Quantitative reconstructions of environmental conditions using testate amoebae rely on sound taxonomy. While the taxonomy of large species is relatively well resolved, this is not the case for most small taxa (typically <45 μm long). In New Zealand, peatlands contain a diversity of both cosmopolitan and characteristic large southern endemic taxa, but also have a high abundance of small taxa. The latter are often lumped into morphotypes reducing their value as ecological indicators. In this study, we demonstrate how (a) lumping small taxa versus splitting them into unique types, and (b) including or excluding them from community analysis influenced their ecological inference. We assessed testate amoeba composition in six peat bogs from New Zealand, three that were moderately-to-highly impacted, and three that were non-impacted. Environmental variables were measured at each sampling site and the surface testate amoeba community patterns and community-environment relationships compared. We found a clear division between impacted and non-impacted sites. Several distinct small taxa were more strongly related to water-table depth and conductivity, while the larger taxa were more correlated to pH. These results show that improved taxonomic resolution of small taxa can provide more informed environmental assessment.     

The moss dwelling testacean fauna of Île de la Possession

An ecological study of the moss dwelling testacean fauna (Protozoa, Rhizopoda) on Île de la Possession (Crozet Archipelago, sub-Antarctica) revealed 83 taxa, belonging to 21 genera. The moss flora was dominated by cosmopolitan and ubiquitous taxa, such as Trinema lineare, T. enchelys, Euglypha laevis and E. rotunda. A cluster analysis and a correspondence analysis identified three communities: (1) a Corythion dubium assemblage found in a drier, slightly acidic terrestrial moss vegetation, (2) the Arcella arenaria, and (3) the Difflugiella crenulata assemblages, both characteristic of wetter, circumneutral habitats. The latter typified submerged mosses growing in running water, while the A. arenaria assemblage seemed to prefer mosses in standing waterbodies. Moisture conditions appeared to play a key role in determining the distribution pattern of testacean communities, while pH was only a secondary factor. A logistic regression emphasised the effect of the habitat type in controlling the variance in testacean assemblages. Moreover, the close relationship between bryophyte species and habitat type had a significant influence on the distribution pattern of the testate amoebae. Weighted averaging and calibration were used to estimate moisture optima and tolerances of the testate amoebae.     

Diversity and Distribution of Freshwater Testate Amoebae (Protozoa) Along Latitudinal and Trophic Gradients in China

Freshwater microbial diversity is subject to multiple stressors in the Anthropocene epoch. However, the effects of climate changes and human activities on freshwater protozoa remain poorly understood. In this study, the diversity and distribution of testate amoebae from the surface sediments were investigated in 51 Chinese lakes and reservoirs along two gradients, latitude and trophic status. A total of 169 taxa belonging to 24 genera were identified, and the most diverse and dominant genera were Difflugia (78 taxa), Centropyxis (26 taxa) and Arcella (12 taxa). Our analysis revealed that biomass of testate amoebae decreased significantly along the latitudinal gradient, while Shannon-Wiener indices and species richness presented an opposite trend (P?P?相似文献   

The Potential Influence of Short-term Environmental Variability on the Composition of Testate Amoeba Communities in <Emphasis Type="Italic">Sphagnum</Emphasis> Peatlands

Testate amoebae are a group of moisture-sensitive, shell-producing protozoa that have been widely used as indicators of changes in mean water-table depth within oligotrophic peatlands. However, short-term environmental variability (i.e., sub-annual) also probably influences community composition. The objective of this study was to assess the potential influence of short-term environmental variability on the composition of testate amoeba communities in Sphagnum-dominated peatlands. Testate amoebae and environmental conditions, including hourly measurements of relative humidity within the upper centimeter of the peatland surface, were examined throughout the 2008 growing season at 72 microsites within 11 peatlands of Pennsylvania and Wisconsin, USA. Relationships among testate amoeba communities, vegetation, depth to water table, pH, and an index of short-term environmental variability (EVI), were examined using nonmetric multidimensional scaling and correlation analysis. Results suggest that EVI influences testate amoeba communities, with some taxa more abundant under highly variable conditions (e.g., Arcella discoides, Difflugia pulex, and Hyalosphenia subflava) and others more abundant when environmental conditions at the peatland surface were relatively stable (e.g., Archerella flavum and Bullinularia indica). The magnitude of environmental variability experienced at the peatland surface appears to be primarily controlled by vegetation composition and density. In particular, sites with dense Sphagnum cover had lower EVI values than sites with loose-growing Sphagnum or vegetation dominated by vascular plants and/or non-Sphagnum bryophytes. Our results suggest that more environmental information may be inferred from testate amoebae than previously recognized. Knowledge of relationships between testate amoebae and short-term environmental variability should lead to more detailed and refined environmental inferences.     

Rediscovery of Nebela ansata (Amoebozoa: Arcellinida) in eastern North America: biogeographical implications

Aim The question whether free‐living protists are generally cosmopolitan is currently a matter of debate. In this study we investigate the geographical distribution of a distinctive testate amoeba species, Nebela ansata, and use our data to assess the potential for highly restricted distribution patterns in some protist species. Location Global. Methods We analysed (1) 3400 testate amoeba publications from North America and other continents, (2) unpublished slides of the Penard Collection of the Natural History Museum, London, UK, and (3) 104 Sphagnum samples from eastern North America. Non‐metric multidimensional scaling (NMDS) was used to visualize the similarities in testate amoeba community composition among 1012 North American samples, including two communities that contained N. ansata. Results We rediscovered N. ansata at a site in New Jersey located close to its type locality, and in Nova Scotia. We also report the existence of an apparently unpublished museum specimen originally collected from New Jersey. Our extensive literature survey confirmed the presence of this species only in the temperate part of eastern North America. The NMDS revealed that communities with N. ansata were less similar to each other than to communities from other parts of North America, suggesting that favourable habitats for N. ansata occur in other Sphagnum‐dominated peatlands, a habitat type that has been extensively sampled in North America and elsewhere. Main conclusions These data provide an unusually convincing case of a free‐living microorganism with a very limited distribution range in the temperate part of eastern North America. The remarkably restricted distribution of N. ansata highlights the extent of our ignorance about the natural history of free‐living microorganisms, and raises questions about the lack of attention to microbial diversity in conservation biology.     

Comparative ecology of vascular plant,bryophyte and testate amoeba communities in four Sphagnum peatlands along an altitudinal gradient in Switzerland

Monitoring tools are needed to assess changes in peatland biotic communities and ecosystem functions in response to on-going climate and other environmental changes. Although the responses of soil organisms and plants to ecological gradients and perturbations do not always correlate, peatland monitoring is mainly based on vegetation surveys. Testate amoebae, a group of protists, are important contributors to carbon and nitrogen cycling in organic soils and are useful bioindicators in peatland ecology and paleoecology. There is however little comparative data on the value of testate amoebae, vascular plants and bryophytes as bioindicators of micro-environmental gradients in peatlands.We compared the relationships of testate amoebae, bryophytes, and vascular plants with soil temperature, water table depth, micro-habitats and the carbon and nitrogen content of Sphagnum mosses in four peatlands along a 1300 m altitudinal gradient in Switzerland. We used the full diversity of vascular plants and bryophyte but only a selection of ten easily identifiable testate amoeba morpho-taxa (i.e. species or species-complexes).Indirect and direct gradient ordinations, multiple factor analysis (MFA) and transfer function models for inferring water table depth showed that a selection of ten testate amoeba taxa are more powerful (% variance explained in RDA) and accurate (discrimination among habitats) indicators of local conditions (micro-habitat type, water table depth and Sphagnum C/N ratio) than the vegetation (vascular plants and bryophytes either individually or combined and considering the full diversity).Our study showed that a limited list of ten easily identifiable testate amoeba taxa have higher bioindication value than the full bryophytes and vascular plants. Furthermore, testate amoebae can be analyzed on samples collected at any season (accessibility allowing and if precise sampling sites are well marked) – a clear advantage for biomonitoring and can be used to infer past changes from the peat record at the same taxonomic resolution. This simple approach could therefore be very useful for biomonitoring of peatlands.     

Diversity and biogeography of testate amoebae

Testate amoebae are amoeboid protists inhabiting a test (shell). They occur globally in soils, wetlands and freshwater, especially peats and mosses. They are of ancient origin, dating from at least the Mesozoic, with possible ancestors as old as the Neoproterozoic. Approximately 2,000 taxa have been described—a number which could easily rise to 4,000 with comprehensive recording. Whilst many protists appear to be cosmopolitan as morphospecies, some of the larger testate species (exceeding 100 μm) have long been considered, controversially, to be geographically restricted. Definitive conclusions have often been confounded by gaps in distributional data and misidentification. Recent increases in recording from previously little known regions, and the rise of molecular taxonomy, have started to resolve outstanding issues—processes still far from complete. Accordingly, biogeographical studies have concentrated on “flagship” species—those which can be identified with certainty and are sufficiently recorded to determine their ecological ranges. Apodera vas (Certes) has been proved to be largely restricted to the Gondwanaland continents and sub-Antarctic islands, but absent from the Holartic despite the availability of much suitable habitat. An early analysis postulated a Mesozoic origin of the species and a distribution influenced by continental drift. Recent molecular evidence could imply a later origin. Either way, its current distribution is clearly influenced by the pattern of global wind currents and lack of lowland tropical habitat. By contrast a “Gondwana-tropical” group of species appears to be restricted to latitudes unaffected by glaciation. Instances of local endemism, such as restriction to a single island, are also known, which await molecular evidence for substantiation. Special Issue: Protist diversity and geographic distribution. Guest editor: W. Foissner.     

Fine-Scale Horizontal and Vertical Micro-distribution Patterns of Testate Amoebae Along a Narrow Fen/Bog Gradient

The ecology of peatland testate amoebae is well studied along broad gradient from very wet (pool) to dry (hummock) micro-sites where testate amoebae are often found to respond primarily to the depth to water table (DWT). Much less is known on their responses to finer-scale gradients, and nothing is known of their possible response to phenolic compounds, which play a key role in carbon storage in peatlands. We studied the vertical (0–3, 3–6, and 6–9 cm sampling depths) micro-distribution patterns of testate amoebae in the same microhabitat (Sphagnum fallax lawn) along a narrow ecological gradient between a poor fen with an almost flat and homogeneous Sphagnum carpet (fen) and a “young bog” (bog) with more marked micro-topography and mosaic of poor fen and bog vegetation. We analyzed the relationships between the testate amoeba data and three sets of variables (1) “chemical” (pH, Eh potential, and conductivity), (2) “physical” (water temperature, altitude, i.e., Sphagnum mat micro-topography, and DWT), and (3) phenolic compounds in/from Sphagnum (water-soluble and primarily bound phenolics) as well as the habitat (fen/bog) and the sampling depth. Testate amoeba Shannon H′ diversity, equitability J of communities, and total density peaked in lower parts of Sphagnum, but the patterns differed between the fen and bog micro-sites. Redundancy analyses revealed that testate amoeba communities differed significantly in relation to Eh, conductivity, water temperature, altitude, water-soluble phenolics, habitat, and sampling depth, but not to DWT, pH, or primarily bound phenolics. The sensitivity of testate amoebae to weak environmental gradients makes them particularly good integrators of micro-environmental variations and has implications for their use in paleoecology and environmental monitoring. The correlation between testate amoeba communities and the concentration of water-soluble phenolic suggests direct (e.g., physiological) and/or indirect (e.g., through impact on prey organisms) effects on testate amoebae, which requires further research.     

贵州寒武系第二统杷榔组有壳变形虫的新发现*

有壳变形虫(testate amoebae)的演化历史最早可追溯至新元古代早期, 以该时期北美、华北、挪威以及澳洲等多个地区浅海相碳酸盐岩、页岩中发现的瓶状微体化石(vase-shaped microfossils)为标志。此前认为, 显生宙的有壳变形虫最早出现在早泥盆世。长期以来, 早古生代的地层中未发现这类原生生物的明确化石证据。本研究通过对岩石样品进行常规孢粉酸泡分析处理和切磨岩石薄片, 获取原位保存的化石标本的技术方法, 从贵州东部剑河县交榜剖面出露的寒武系杷榔组(第2统第4阶)中获得数枚有壳变形虫(testate amoebae)化石标本。基于标本的显微形态特征, 并结合激光拉曼光谱等研究, 对原先记述为疑源类的Plagasphaera balangensis和P. sp. A两形态种进行重新认识和描述。由于它们在结构和形态上与一些现生的鳞壳虫目(Euglyphida)有壳变形虫极为相似, 因此将先前定为疑源类的Plagasphaera balangensis和P. sp. A两形态属、种名, 分别修订为Palaeoassulina balangensis gen. et sp. nov.和?Palaeoassulina sp. A。该发现不仅将显生宙有壳变形虫的原有化石记录从晚古生代泥盆纪向前延伸至寒武纪早期, 还为调查研究有壳变形虫的系统演化提供关键的生物化石证据。