Four new Ophiostoma species associated with hardwood-infesting bark beetles in Norway and Poland

Ophiostoma spp. (Ophiostomatales, Ascomycota) are well-known fungi associated with bark and ambrosia beetles (Curculionidae: Scolytinae, Platypodinae). Fungi in the Ophiostomatales include serious tree pathogens as well as agents of timber blue-stain. Although these fungi have been extensively studied in the northern hemisphere, very little is known regarding their occurrence on hardwoods in Europe. The aims of the present study were to identify and characterize new Ophiostoma spp. associated with bark and ambrosia beetles infesting hardwoods in Norway and Poland, and to resolve phylogenetic relationships of Ophiostoma spp. related to the Norwegian and Polish isolates, using multigene phylogenetic analyses. Results obtained from five gene regions (ITS, LSU, β-tubulin, calmodulin, translation elongation factor 1-α) revealed four new Ophiostoma spp. These include Ophiostoma hylesinum sp. nov., O. signatum sp. nov., and O. villosum sp. nov. that phylogenetically are positioned within the Ophiostoma ulmi complex. The other new species, Ophiostoma pseudokarelicum sp. nov. reside along with Ophiostoma karelicum in a discrete, well-supported phylogenetic group in Ophiostoma s. stricto. The results of this study clearly show that the diversity and ecology of Ophiostoma spp. on hardwoods in Europe is poorly understood and that further studies are required to enrich our knowledge about these fungi.     

Description of three novel Lagenidium (Oomycota) species causing infection in mammals

BackgroundRecent molecular phylogenetic analysis of Lagenidium strains recovered from subcutaneous lesions in cats, dogs, and a human with lagenidiosis resolved into four clades; one of them was Lagenidium giganteum, but three others were novel.AimsDue to the recent increase in L. giganteum infections from mammals, we studied 21 Lagenidium strains isolated from dogs and a human available in our collection.MethodsMolecular phylogenetic studies and phenotypic characteristics were used to characterize the strains.ResultsWe report the finding of three novel species, herein designated as Lagenidium ajelloi, sp. nov., Lagenidium albertoi sp. nov, and Lagenidium vilelae sp. nov. Their morphological and growth features are also presented.ConclusionsOur study revealed the presence of three novel Lagenidium species infecting mammals.     

Three new Lasiodiplodia spp. from the tropics, recognized based on DNA sequence comparisons and morphology

Botryosphaeria rhodina (anamorph Lasiodiplodia theobromae) is a common endophyte and opportunistic pathogen on more than 500 tree species in the tropics and subtropics. During routine disease surveys of plantations in Australia and Venezuela several isolates differing from L. theobromae were identified and subsequently characterized based upon morphology and ITS and EF1-alpha nucleotide sequences. These isolates grouped into three strongly supported clades related to but different from the known taxa, B. rhodina and L. gonubiensis, These have been described here as three new species L. venezuelensis sp. nov., L. crassispora sp. nov. and L. rubropurpurea sp. nov. The three could be distinguished easily from each other and the two described species of Lasiodiplodia, thus confirming phylogenetic separations. Furthermore all five Lasiodiplodia spp. now recognized separated from Diplodia spp. and Dothiorella spp. with 100% bootstrap support.     

Defining species in Tulasnella by correlating morphology and nrDNA ITS-5.8S sequence data of basidiomata from a tropical Andean forest

The genus Tulasnella comprises important orchid mycobionts. Molecular phylogenetic studies on nrITS-5.8S sequences of Tulasnella species previously isolated from mycorrhizas of epiphytic orchids from a tropical Andean forest showed genomic variability among clones which was difficult to interpret as intra- or interspecific variations or to correlate with described Tulasnella species. To improve this situation, we collected basidiomata of Tulasnella in an Andean forest, studied part of the sequences of fungal ribosomal genes and correlated molecular data with the morphology of the specimens. Within five basidiomata displaying slight morphological variability, we found inter-specimen nrITS1-5.8S-ITS2 variability corresponding to proportional differences of less than 1% except for one clone with 5.1% divergence. Results indicate that the slightly variable basidiomata should be considered as one species, which is morphologically tentatively assigned to the Tulasnella pruinosa complex. However, comparison of nrITS1-5.8S-ITS2 sequences, including sequences of T. pruinosa from other origins, indicate that Tulasnella sp. is only distantly related to the T. pruinosa specimens included in the analyses. Sequences of all morphologically similar and taxonomically well-identified species are required to decide whether the basidiomata analyzed in the present study represent a new species. The new sequences are rather similar to sequences obtained previously from mycorrhizae of epiphytic orchids of the same area indicating mycorrhizal potential of this fungus.     

Unravelling the Biodiversity and Molecular Phylogeny of Needle Nematodes of the Genus Longidorus (Nematoda: Longidoridae) in Olive and a Description of Six New Species

The genus Longidorus includes a remarkable group of invertebrate animals of the phylum Nematoda comprising polyphagous root-ectoparasites of numerous plants including several agricultural crops and trees. Damage is caused by direct feeding on root cells as well as by transmitting nepoviruses that cause disease on those crops. Thus, correct identification of Longidorus species is essential to establish appropriate control measures. We provide the first detailed information on the diversity and distribution of Longidorus species infesting wild and cultivated olive soils in a wide-region in southern Spain that included 159 locations from which 449 sampling sites were analyzed. The present study doubles the known biodiversity of Longidorus species identified in olives by including six new species (Longidorus indalus sp. nov., Longidorus macrodorus sp. nov., Longidorus onubensis sp. nov., Longidorus silvestris sp. nov., Longidorus vallensis sp. nov., and Longidorus wicuolea sp. nov.), two new records for wild and cultivate olives (L. alvegus and L. vineacola), and two additional new records for wild olive (L. intermedius and L. lusitanicus). We also found evidence of some geographic species associations to western (viz. L. alvegus, L. intermedius, L. lusitanicus, L. onubensis sp. nov., L. vineacola, L. vinearum, L. wicuolea sp. nov.) and eastern distributions (viz. L. indalus sp. nov.), while only L. magnus was detected in both areas. We developed a comparative study by considering morphological and morphometrical features together with molecular data from nuclear ribosomal RNA genes (D2–D3 expansion segments of 28S, ITS1, and partial 18S). Results of molecular and phylogenetic analyses confirmed the morphological hypotheses and allowed the delimitation and discrimination of six new species of the genus described herein and four known species. Phylogenetic analyses of Longidorus spp. based on three molecular markers resulted in a general consensus of these species groups, since lineages were maintained for the majority of species. This study represents the most complete phylogenetic analysis for Longidorus species to date.     

Potential speciation of morphotypes in the photosymbiotic ascidian <Emphasis Type="Italic">Didemnum molle</Emphasis> in the Ryukyu Archipelago,Japan

Four morphotypes are recognized in the photosymbiotic ascidian Didemnum molle in the Ryukyu Archipelago: three color morphs (white, dark gray, and brown) of small-type colonies and one large-type colony (white with gray patches). The genetic variation among these four morphotypes was investigated by constructing phylogenetic trees based on a 401-bp fragment of the cytochrome oxidase subunit I (COI) gene of 29 specimens collected from five islands (Okinawajima, Sesokojima, Ikeijima, Kumejima, and Ishigakijima). The results support the monophyly of the genus Didemnum and that of the four morphotypes of D. molle. Moreover, the phylogenetic trees discriminated four clades corresponding to each morphotype. The geographic differences of the sequences were much smaller than the differences among the morphotypes, suggesting that the four morphotypes in D. molle are discrete sibling species. Communicated by Biology Editor Dr Ruth Gates     

Molecular phylogenetic analyses reveal three new Ceratocystis species and provide evidence for geographic differentiation of the genus in Africa

The emergence of wattle wilt disease on non-native Acacia mearnsii trees in Africa, caused by the indigenous fungus Ceratocystis albifundus, has highlighted a need to better understand the diversity, ecology and distribution of Ceratocystis species in natural African environments. In this study we applied phylogenetic inference to identify and characterize isolates of Ceratocystis collected in a natural savanna ecosystem in South Africa. Three new species were recognized and are described as C. cryptoformis sp. nov. in the C. moniliformis complex, as well as C. thulamelensis sp. nov. and C. zambeziensis sp. nov., both residing in the C. fimbriata complex. Incorporating the new species into global phylogenies of Ceratocystis provided insights into the patterns of evolution and biogeography of this group of fungi. Notably, the African continent was identified as an important centre of diversification of Ceratocystis spp., from which several lineages of these fungi were shown to have radiated.     

Phylogenetic analysis of the Cenozoic family Sieblosiidae (Insecta: Odonata), with description of new taxa from Russia, Italy and France

We describe the following Sieblosiidae: an unamed “gen. and sp. A” from the Miocene of Italy, Miostenolestes zherikhini nov. gen., nov. sp., Paraoligolestes stavropolensis nov. sp., Stenolestes fasciata nov. sp. (all from the Miocene of North Caucasus), Stenolestes (?) adygeianensis nov. sp. (Oligocene of North Caucasus), and Stenolestes cerestensis nov. sp. (Oligocene of France). The genus Sieblosia Handlirsch, 1906 is restored. A new phylogenetic analysis of the Sieblosiidae is proposed. The two taxa “gen. and sp. A” and Oligolestes fall in most inclusive positions in the same clade with the Sieblosiidae. Within the Sieblosiidae sensu stricto, the two clades (Paraoligolestes + (Parastenolestes + Stenolestes)) and (Parastenolestes + Stenolestes) are the best supported. The family Sieblosiidae seems to be restricted to the Oligocene-Miocene of Europe.     

Cryptostylis species (Orchidaceae) from a broad geographic and habitat range associate with a phylogenetically narrow lineage of Tulasnellaceae fungi

While many Australian terrestrial orchids have highly specialized mycorrhizal associations, we tested the hypothesis that the geographically widespread orchid genus Cryptostylis associates with a diversity of fungal species. Using fungal isolation and molecular approaches, we investigated the mycorrhizal associations of five Australian Cryptostylis species (27 sites sampled) and included limited sampling from three Asiatic Cryptostylis species (two sites). Like related orchid genera, Tulasnellaceae formed the main fungal associations of the Cryptostylis species we sampled, although some ectomycorrhizal, ericoid and saprotrophic fungi were detected infrequently. Each species of Australian Cryptostylis associated with three to seven Tulasnella Operational Taxonomic Units (OTUs), except for C. hunteriana where only one Tulasnella OTU was detected. In total, eleven Tulasnella OTUs associated with Australian Cryptostylis. The Asiatic Cryptostylis associated with four different Tulasnella OTUs belonging to the same lineage as the Australian species. While five Tulasnella OTUs (T. australiensis, T. prima, T. warcupii, T. densa, and T. punctata) were used by multiple species of Australian Cryptostylis, the most commonly used OTU differed between orchid species. The association with different Tulasnella fungi by Cryptostylis species co-occurring at the same site suggests that in any given environmental condition, Cryptostylis species may intrinsically favour different fungal OTUs.     

UPDATING THE GENUS DICTYOSPHAERIUM AND DESCRIPTION OF MUCIDOSPHAERIUM GEN. NOV. (TREBOUXIOPHYCEAE) BASED ON MORPHOLOGICAL AND MOLECULAR DATA1

Recent molecular analyses of Dictyosphaerium strains revealed a polyphyletic origin of this morphotype within the Chlorellaceae. The type species Dictyosphaerium ehrenbergianum Nägeli formed an independent lineage within the Parachlorella clade, assigning the genus to this clade. Our study focused on three different Dictyosphaerium species to resolve the phylogenetic position of remaining species. We used combined analyses of morphology; molecular data based on SSU and internally transcribed spacer region (ITS) rRNA sequences; and the comparison of the secondary structure of the SSU, ITS‐1, and ITS‐2 for species and generic delineation. The phylogenetic analyses revealed two lineages without generic assignment and two distinct clades of Dictyosphaerium‐like strains within the Parachlorella clade. One clade comprises the lineages with the epitype strain of D. ehrenbergianum Nägeli and two additional lineages that are described as new species (Dictyosphaerium libertatis sp. nov. and Dictyosphaerium lacustre sp. nov.). An emendation of the genus Dictyosphaerium is proposed. The second clade comprises the species Dictyosphaerium sphagnale Hindák and Dictyosphaerium pulchellum H. C. Wood. On the basis of phylogenetic analyses, complementary base changes, and morphology, we describe Mucidosphaerium gen. nov with the four species Mucidosphaerium sphagnale comb. nov., Mucidosphaerium pulchellum comb. nov., Mucidosphaerium palustre sp. nov., and Mucidosphaerium planctonicum sp. nov.     

Systematics and taphonomy of an Early Kimmeridgian belemnite fauna from the Mediterranean Tethys (Monte Nerone, Central Apennines, Italy)

About three hundred belemnite rostra were collected from lower Kimmeridgian beds of a structural high sequence cropping out at Mt. Nerone (Central Apennines, Pesaro Province, Italy). The belemnite fauna is composed mainly of new species. Nine species were recognised, ascribed to five genera, that include Hibolithes semisulcatus M?NSTER, 1830; H. pignattii nov. sp.; Acutibelus sp. cf. acuariformis RIEGRAF, 1981; Belemnopsis neronensis nov. sp., Duvalia matteuccii nov. sp., D. nicosiai nov. sp., D. pallinii nov. sp., D. raymondi nov. sp. and Rhopaloteuthis massimoi nov. sp.; moreover a single specimen is treated in open nomenclature as Belemnopseidae incertae sedis. The stratigraphic and palaeobiogeographic significance of the new fauna is discussed. The taphonomy of the belemnite-rich level is described, with reference to borings found on the belemnite rostra.     

A new sauropod dinosaur from the Lower Cretaceous Ilek Formation,Western Siberia,Russia

Sibirotitan astrosacralis nov. gen., nov. sp., is described based on isolated but possibly associated cervical and dorsal vertebrae, sacrum, and previously published pedal elements from the Lower Cretaceous (Barremian?) Ilek Formation at Shestakovo 1 locality (Kemerovo Province, Western Siberia, Russia). Some isolated sauropod teeth from the Shestakovo 1 locality are referred to the same taxon. The phylogenetic parsimony analyses place Sibirotitan astrosacralis nov. gen., nov. sp., as a non-titanosaurian somphospondyl titanosauriform. The new taxon exhibits four titanosauriform and one somphospondylan synapomorphies, and one autapomorphy – a hyposphene ridge that extends between the neural canal and the postzygapophyses. It differs from all other Somphospondyli by having only five sacral vertebrae. The new taxon shares with Euhelopus and Epachtosaurus sacral ribs that converge towards the middle of the sacrum in dorsal view. Sibirotitan astrosacralis nov. gen., nov. sp., is only the second sauropod taxon from Russia and one of the oldest titanosauriform described so far in Asia.     

Lower Carboniferous (middle Visean) foraminifers and algae from an interior sea,Southern Carnarvon Basin,Australia

A moderate diversity biota of foraminifers, algae and calcareous microproblematica is recorded from the Lower Carboniferous Yindagindy Formation within the intracratonic Southern Carnarvon Basin in Western Australia. Very shallow metahaline to hypersaline conditions are suggested. The palaeobotanical components are sporadic calcitarcha, tuberitinaceans, codiaceans Orthriosiphon? sp. 1, dasycladaleans? Koninckopora tenuiramosa, and algosponges Issinella devonica, Serrisinella cf. serrensis, Issinella? sp. 1, Kamaena cf. awirsi, Proninella? sp. and Stacheoides spp. The foraminiferal assemblage is dominated by a new koktjubinid taxon: Praekoktjubina yindagindyensis nov. gen., nov. sp. Subordinate associated foraminifers are more sporadic Salpingothurammina? sp. 1, Plectinopsis michelseni nov. gen., nov. sp., Rectopravina multifida nov. gen., nov. sp. (with 4 morphotypes), and scarce Endothyra spp. Despite many of these taxa being endemic, a middle Visean age is probable, based on: (1) the maximum global geographic extent of K. tenuiramosa reached during the middle Visean, (2) the disappearance of Plectinopsis nov. gen. in Palaeotethys and the Urals, and (3) the first occurrence of Praekoktjubina nov. gen. in Palaeotethys. An age no older than the middle Visean is supported by sparse conodonts from the Formation and comparison to episodes of carbonate deposition in the Bonaparte Basin, further north in the East Gondwana rift system. Absence of middle Visean archaediscoids may be due to high salinity. The following algal and foraminiferal families and superfamilies are emended: Scribroporellaceae (a lectotype is selected for Orthriosiphon saskatchewanense); Palaeospiroplectamminidae (due to the creation of Plectinopsis nov. gen.); Haplophragminoidea (due to the creation of Rectopravina nov. gen.); and Globivalvulinoidea and Koktjubinidae (due to the creation of Praekoktjubina nov. gen.).     

Systematics and taphonomy of an Early Kimmeridgian belemnite fauna from the Mediterranean Tethys (Monte Nerone, Central Apennines, Italy)

About three hundred belemnite rostra were collected from Lower Kimmeridgian beds of a structural high sequence cropping out at Mt. Nerone (central Apennines, Pesaro Province, Italy). The belemnite fauna is composed mainly of new species. Nine species were recognised, ascribed to five genera, which include Hibolithes semisulcatusMünster, 1830; H. pignattii nov. sp.; Acutibelu0s sp. cf. acuariformisRiegraf, 1981; Belemnopsis neronensis nov. sp., Duvalia matteuccii nov. sp., D. nicosiai nov. sp., D. pallinii nov. sp., D. raymondi nov. sp. and Rhopaloteuthis massimoi nov. sp.; moreover a single specimen is treated in open nomenclature as Belemnopseidae incertae sedis. The stratigraphic and palaeobiogeographic significance of the new fauna is discussed. The taphonomy of the belemnite-rich level is described, with reference to borings found on the belemnite rostra.La fauna a belemniti risulta composta quasi esclusivamente da specie nuove. Sono state riconosciute le seguenti specie: Hibolithes semisulcatusMünster, 1830; H. pignattii nov. sp.; Acutibelus sp. cf. acuariformisRiegraf, 1981, Belemnopsis neronensis nov. sp., Duvalia matteuccii nov. sp., D. nicosiai nov. sp., D. pallinii nov. sp., D. raymondi nov. sp. and Rhopaloteuthis massimoi nov. sp. Inoltre un esemplare è stato discusso con nomenclatura aperta come Belemnopseidae incertae sedis. Alcuni nuovi dati stratigrafici e paleobiogeografici sono stati analizzati ed integrati con i dati della letteratura. E’ stata anche esaminata la tafonomia del livello a belemniti e le perforazioni presenti sulla superficie dei rostri.     

Gilliamella intestini sp. nov., Gilliamella bombicola sp. nov., Gilliamella bombi sp. nov. and Gilliamella mensalis sp. nov.: Four novel Gilliamella species isolated from the bumblebee gut

Spectra of five isolates (LMG 28358^T, LMG 29879^T, LMG 29880^T, LMG 28359^T and R-53705) obtained from gut samples of wild bumblebees of Bombus pascuorum, Bombus lapidarius and Bombus terrestris were grouped into four MALDI-TOF MS clusters. RAPD analysis revealed an identical DNA fingerprint for LMG 28359^T and R-53705 which also grouped in the same MALDI-TOF MS cluster, while different DNA fingerprints were obtained for the other isolates.Comparative 16S rRNA gene sequence analysis of the four different strains identified Gilliamella apicola NCIMB 14804^T as nearest neighbour species. Average nucleotide identity values of draft genome sequences of the four isolates and of G. apicola NCIMB 14804^T were below the 96% threshold value for species delineation and all four strains and G. apicola NCIMB 14804^T were phenotypically distinct. Together, the draft genome sequences and phylogenetic and phenotypic data indicate that the four strains represent four novel Gilliamella species for which we propose the names Gilliamella intestini sp. nov., with LMG 28358^T as the type strain, Gilliamella bombicola sp. nov., with LMG 28359^T as the type strain, Gilliamella bombi sp. nov., with LMG 29879^T as the type strain and Gilliamella mensalis sp. nov., with LMG 29880^T as the type strain.     

Sur quelques sélaciens nouveauxdu Crétacé supérieur de Bolivie: Amérique du Sud

The locality of Torotoro (Puca Group, Upper Cretaceous of Bolivia) has yielded a small shark-fauna including a new genus and five new species: Pucabatis hoffstetteri nov. gen., nov. sp., Ischyrhiza hartenbergeri nov. sp., Dasyatis branisai nov. sp., D. molinoensis nov. sp. et D. schaefferi nov. sp. The genus Pucapristis, previously described on rostral teeth, is represented by numerous oral teeth unknown until this day. The occurence of the genus Schizorhiza, already pointed out, allows to attribute the El Molino formation to maestrichtian.