The Mitochondrial Genome of Arctica islandica; Phylogeny and Variation

Arctica islandica is known as the longest-lived non-colonial metazoan species on earth and is therefore increasingly being investigated as a new model in aging research. As the mitochondrial genome is associated with the process of aging in many species and bivalves are known to possess a peculiar mechanism of mitochondrial genome inheritance including doubly uniparental inheritance (DUI), we aimed to assess the genomic variability of the A. islandica mitochondrial DNA (mtDNA). We sequenced the complete mitochondrial genomes of A. islandica specimens from three different sites in the Western Palaearctic (Iceland, North Sea, Baltic Sea). We found the A. islandica mtDNA to fall within the normal size range (18 kb) and exhibit similar coding capacity as other animal mtDNAs. The concatenated protein sequences of all currently known Veneroidea mtDNAs were used to robustly place A. islandica in a phylogenetic framework. Analysis of the observed single nucleotide polymorphism (SNP) patterns on further specimen revealed two prevailing haplotypes. Populations in the Baltic and the North Sea are very homogenous, whereas the Icelandic population, from which exceptionally old individuals have been collected, is the most diverse one. Homogeneity in Baltic and North Sea populations point to either stronger environmental constraints or more recent colonization of the habitat. Our analysis lays the foundation for further studies on A. islandica population structures, age research with this organism, and for phylogenetic studies. Accessions for the mitochondrial genome sequences: KC197241 Iceland; KF363951 Baltic Sea; KF363952 North Sea; KF465708 to KF465758 individual amplified regions from different speciemen     

Red algal exotics on North Sea coasts

A total of ten red seaweed species are recognized as introduced into the North Sea from other parts of the world. These areAsparagopsis armata andBonnemaisonia hamifera (Bonnemaisoniales),Grateloupia doryphora (Halymeniales),Antithamnionella spirographidis, Antithamnionella ternifolia, Anotrichium furcellatum, Dasya baillouviana, ?Dasysiphonia sp.,Polysiphonia harveyi andPolysiphonia senticulosa (Ceramiales). The oldest of these isB. hamifera, introduced prior to 1890, while the most recent,?Dasysiphonia sp., was first found in 1994 and still requires taxonomic investigation. A variety of distribution patterns is seen, with geographical ranges varying from general within the North Sea to very restricted. The diversity of introduced red algae on eastern coasts of the North Sea is much greater than in the west. The most likely explanation for this pattern is that French coasts were the initial site of introduction for many of the seaweeds, which were then distributed northwards by the residual surface currents. Their increasing success in the Netherlands has probably been promoted by the drastically changed local hydrodynamic conditions which have also permitted the recent introduction of many native European species. Of the biological features of species that may favour their success as introductions, clonal vegetative propagation, often with specialized propagules or fragmentation mechanisms, is almost ubiquitous. Low-temperature tolerances can be inferred, but data are sparse. Many of the alien red algae in the North Sea contain anti-grazing compounds such as bromophenols, which may contribute to their invasive potential by deterring grazing sufficiently to permit establishment of an inoculum.     

Exotic flagellates of coastal North Sea waters

Flagellate species have been shown to survive transocean passage by ballast water and the large dinoflagellateGymnodinium catenatum was introduced from Japanese to Tasmanian waters in this way.Gymnodinium mikimotoi—better known asGyrodinium aureolum—andFibrocapsa japonica as well asAlexandrium leeii are good candidates to have been introduced recently. Species which seem to have been introduced recently into the North Sea but apparently are transported from adjacent seas by currents into the region areGymnodinium chlorophorum andAlexandrium minutum. Species reported as introduced due to misidentifications areGymnodinium catenatum andLepidodinium viride. Under other names the speciesProrocentrum minimum, Prorocentrum redfieldii, andHeterosigma akashiwo have been known for a long time in the North Sea. The recent reports of threeChattonella species may be either due to introduction or they have been overlooked. The reasons why the introduction of flagellates into coastal North Sea waters is difficult to prove will be discussed.     

Influence of oceanic factors on Anguilla anguilla (L.) over the twentieth century in coastal habitats of the Skagerrak,southern Norway

The European eel (Anguilla anguilla L.) is distributed in coastal and inland habitats all over Europe, but spawns in the Sargasso Sea and is thus affected by both continental and oceanic factors. Since the 1980s a steady decline has been observed in the recruitment of glass eels to freshwater and in total eel landings. The eel is considered as critically endangered on the International Union for the Conservation of Nature and Natural Resources Red List of species. The Skagerrak beach seine survey from Norway constitutes the longest fishery-independent dataset on yellow/silver eels (starting in 1904). The Skagerrak coastal region receives larvae born in the Sargasso Sea spawning areas that have followed the Gulf Stream/North Atlantic Drift before they penetrate far into the North Sea. The Skagerrak coastal time series is therefore particularly valuable for exploring the impacts of oceanic factors on fluctuations in eel recruitment abundance. Analyses showed that Sargasso Sea surface temperature was negatively correlated with eel abundance, with a lag of 12 years revealing a cyclic and detrimental effect of high temperatures on the newly hatched larvae. The North Atlantic Oscillation index and inflow of North Atlantic water into the North Sea were negatively correlated with eel abundance, with a lag of 11 years. Increased currents towards the North Atlantic during high North Atlantic Oscillation years may send larvae into the subpolar gyre before they are ready to metamorphose and settle, resulting in low recruitment in the northern part of the distribution area for these years. The Skagerrak time series was compared with glass eel recruitment to freshwater in the Netherlands (Den Oever glass eel time series), and similar patterns were found revealing a cycle linked to changes in oceanic factors affecting glass eel recruitment. The recent decline of eels in the Skagerrak also coincided with previously documented shifts in environmental conditions of the North Sea ecosystem.     

Mitochondrial Control Region and microsatellite analyses on harbour porpoise (Phocoena phocoena) unravel population differentiation in the Baltic Sea and adjacent waters

The population status of the harbour porpoise (Phocoena phocoena) in the Baltic area has been a continuous matter of debate. Here we present the by far most comprehensive genetic population structure assessment to date for this region, both with regard to geographic coverage and sample size: 497 porpoise samples from North Sea, Skagerrak, Kattegat, Belt Sea, and Inner Baltic Sea were sequenced at the mitochondrial Control Region and 305 of these specimens were typed at 15 polymorphic microsatellite loci. Samples were stratified according to sample type (stranding vs. by-caught), sex, and season (breeding vs. non-breeding season). Our data provide ample evidence for a population split between the Skagerrak and the Belt Sea, with a transition zone in the Kattegat area. Among other measures, this was particularly visible in significant frequency shifts of the most abundant mitochondrial haplotypes. A particular haplotype almost absent in the North Sea was the most abundant in Belt Sea and Inner Baltic Sea. Microsatellites yielded a similar pattern (i.e., turnover in occurrence of clusters identified by STRUCTURE). Moreover, a highly significant association between microsatellite assignment and unlinked mitochondrial haplotypes further indicates a split between North Sea and Baltic porpoises. For the Inner Baltic Sea, we consistently recovered a small, but significant separation from the Belt Sea population. Despite recent arguments that separation should exceed a predefined threshold before populations shall be managed separately, we argue in favour of precautionary acknowledging the Inner Baltic porpoises as a separate management unit, which should receive particular attention, as it is threatened by various factors, in particular local fishery measures.     

The recent arrival of the oceanic isopodIdotea metallica Bosc off Helgoland (German Bight, North Sea): an indication of a warming trend in the North Sea?

In 1988 a long-term study was started of the isopod fauna associated with surface drift material off Helgoland (German Bight, North Sea). In the summer of 1994 specimens ofIdotea metallica Bosc were recorded for the first time. There is no evidence that this species has ever been present in the German Bight before. The samples contained males, both gravid and non-gravid females, and juveniles, indicating that the species reproduced successfully in the Helgoland region. Interbreeding of specimens from Helgoland and the western Mediterranean produced fertile off-spring. As a neustonic species,I. metallica shows a high natural capacity for dispersal. It thus seems unlikely that the arrival of the species in the North Sea resulted from an accidental introduction by man. We are probably witnessing an extension of the species’ geographical range by natural means of dispersal, as a response to recent changes in the ecological conditions of the German Bight. Temperature data measured by the Biologische Anstalt Helgoland since 1962 show that the last decade (except 1996) was characterized by unusually mild winters. Following the severe winter of 1996,I. metallica was again absent from the Helgoland region. After the subsequent mild winters (1997 and 1998), however, the species reappeared in the summer of 1998 with higher numbers than ever before. This suggests that the observed phenomena are closely connected with the recent temperature anomalies.I. metallica can be regarded as a potential immigrant to a warmer North Sea, and may be useful as a sensitive indicator of the predicted long-term warming trend.     

Sexual Reproduction of the Foraminiferan Planoglabratella opercularis (d'Orbigny, 1839) in Nature

The taxonomic composition of the entire foraminiferan assemblage in the southern part of Peter the Great Bay (Sea of Japan) was studied during the summer 1999 expedition. Along with other foraminiferans, several offspring-filled tests of Planoglabratella opercularis (d'Orbigny, 1839) were found in surface sediment samples. Based on the extensive literature on the reproductive cycle of foraminiferans and indirect evidence, it was found that each of the parent individuals of this species was a partner in a plastogamous pair, thus being a gamont, while their offspring were agamonts. The gamogony stage, contrary to the generally accepted opinion, took place under natural conditions in summer (not in fall or winter) at a bottom water temperature of 15–18°C. The results of this research may be important in paleogeographical and paleoecological reconstructions.     

Warm-water decapods and the trophic amplification of climate in the North Sea

A long-term time series of plankton and benthic records in the North Sea indicates an increase in decapods and a decline in their prey species that include bivalves and flatfish recruits. Here, we show that in the southern North Sea the proportion of decapods to bivalves doubled following a temperature-driven, abrupt ecosystem shift during the 1980s. Analysis of decapod larvae in the plankton reveals a greater presence and spatial extent of warm-water species where the increase in decapods is greatest. These changes paralleled the arrival of new species such as the warm-water swimming crab Polybius henslowii now found in the southern North Sea. We suggest that climate-induced changes among North Sea decapods have played an important role in the trophic amplification of a climate signal and in the development of the new North Sea dynamic regime.     

Immunological dietary analysis of two penaeid shrimp species from a South Carolina tidal creek

The natural, visually unrecognizable components of the diets of two species of penaeid shrimp were studied utilizing immunological methods. Seine samples of Penaeus aztecus Ives and P. setiferus (L.) were collected biweekly from May to November, 1983 in a tidal creek of North Inlet, South Carolina. Three size classes were established to examine possible ontogenetic shifts in diet as the shrimp grew. Immunoassays for P. aztecus indicated both macrofaunal and meiofaunal taxa present in all three size classes, with no single dominant prey. P. setiferus proventricular contents, however, revealed consistent presence of three prey items (Palaemonetes pugio (Holthuis), Uca pugnax (Smith), and Sesarma reticulatum (Say), as well as gammarid amphipods, polychaetes, periwinkles, and foraminiferans.     

Invertebrates of the Salton Sea: a scanning electron microscopy portfolio

Scanning electron microphotographs of 16 Salton Sea invertebrate species are presented within this portfolio. A wide spectrum of invertebrates was investigated including foraminiferans, a flatworm, a rotifer, annelids, crustaceans and insects. Additional information is provided on the morphology and function of structures visible in the images.     

Understanding Long-Term Changes in Species Abundance Using a Niche-Based Approach

One of the major challenges to understanding population changes in ecology for assessment purposes is the difficulty in evaluating the suitability of an area for a given species. Here we used a new simple approach able to faithfully predict through time the abundance of two key zooplanktonic species by focusing on the relationship between the species’ environmental preferences and their observed abundances. The approach is applied to the marine copepods Calanus finmarchicus and C. helgolandicus as a case study characterising the multidecadal dynamics of the North Sea ecosystem. We removed all North Sea data from the Continuous Plankton Recorder (CPR) dataset and described for both species a simplified ecological niche using Sea Surface Temperature (SST) and CPR Phytoplankton Colour Index (PCI). We then modelled the dynamics of each species by associating the North Sea’s environmental parameters to the species’ ecological niches, thus creating a method to assess the suitability of this area. By using both C. finmarchicus and C. helgolandicus as indicators, the procedure reproduces the documented switches from cold to warm temperate states observed in the North Sea.     

Benthic meiofaunal density and community composition in the deep White Sea and their temporal variations

In spite of the fact that shallow-water meiobenthos of the White Sea is a relatively well studied, the information on meiobenthic fauna from the deepest part of this sea is still very scanty. This study represents the first major study of the meiobenthos from the deep White Sea. The composition of the meiobenthic community, density and vertical distribution was studied during four sampling occasions in the deepest part of the Kandalaksha Depression (White Sea) in July 1998, October 1998, May 1999 and November 1999. Samples were collected from a depth of 270?m with the aid of a multicorer. The total density of meiobenthos in 1998 was twice than in 1999 (on average, 2,356 and 1,464 ind./10?cm², respectively). The most abundant meiobenthic group was Foraminifera (59?%), followed by Nematoda (26?%) and Harpacticoida (7?%). These relative and absolute abundance values are comparable with the same depth interval in Arctic and temperate regions. The density of foraminiferans and nematodes was higher in the autumn and lower in the summer. This may be explained by the mass propagation of these animals in the autumn season: the density of juvenile nematodes and small-sized foraminiferans increased significantly in the 1- to 4-cm-deep sediment layers in autumn. The size range of the meiobenthos in the deepest part of the White Sea was also comparable to deep-sea meiobenthos (the 63–125 and 125–250?μm size classes were most dominant).     

Herring and Sprat Abundance Indices Predict Chick Growth and Reproductive Performance of Common Terns Breeding in the Wadden Sea

Herring (Clupea harengus) and sprat (Sprattus sprattus) are the key prey resources of common terns (Sterna hirundo) breeding in the Wadden Sea. Breeding success of the terns has been below average since 2002, coinciding with exceptionally low herring recruitment and sprat abundance. Time series of herring and sprat abundance in the North Sea and in the Wadden Sea were analyzed to explain long-term breeding success and chick development at two common tern breeding colonies. North Sea herring recruitment and sprat abundance in the Wadden Sea explained the largest part of common tern breeding success, both as single variables and in a multiple regression approach. Breeding success showed stronger correlations with herring recruitment indices derived from the North Sea region compared to the Wadden Sea. Also, herring and sprat abundance data explained more variability in breeding success than of more directly responding measures such as growth rate and maximum weight of chicks. Despite spatial and temporal incoherences between fish surveys and the common tern breeding season, breeding success of common terns reflected the abundance of their key prey fish beyond their foraging range and breeding season. We argue that the ecological connectivity between large- and small-scale herring abundance and the responsiveness of common tern breeding success is strong enough to establish a fish–seabird indicator system to be potentially valuable in monitoring and conservation.     

Spatial extent and historical context of North Sea oxygen depletion in August 2010

Prompted by recent observations of seasonal low dissolved oxygen from two moorings in the North Sea, a hydrographic survey in August 2010 mapped the spatial extent of summer oxygen depletion. Typical near-bed dissolved oxygen saturations in the stratified regions of the North Sea were 75–80 % while the well-mixed regions of the southern North Sea reached 90 %. Two regions of strong thermal stratification, the area between the Dooley and Central North Sea Currents and the area known as the Oyster Grounds, had oxygen saturations as low as 65 and 70 % (200 and 180 μmol dm^?3) respectively. Low dissolved oxygen was apparent in regions characterised by low advection, high stratification, elevated organic matter production from the spring bloom and a deep chlorophyll maximum. Historical data over the last century from the International Council for the Exploration of the Sea oceanographic database highlight an increase in seasonal oxygen depletion and a warming over the past 20 years. The 2010 survey is consistent with, and reinforces, the signal of recent depleted oxygen at key locations seen in the (albeit sparse) historical data.     

Syn-Vivo Bioerosion of Nautilus by Endo- and Epilithic Foraminiferans (New Caledonia and Vanuatu)

A variety of syn-vivo bioerosion traces produced by foraminiferans is recorded in shells of Nautilus sampled near New Caledonia and Vanuatu. These are two types of attachment scars of epilithic foraminiferans and two forms of previously undescribed microborings, a spiral-shaped and a dendritic one, both most likely being the work of endolithic ''naked'' foraminiferans. Scanning electron microscopy of epoxy-resin casts of the latter revealed that these traces occur in clusters of up to many dozen individuals and potentially are substrate-specific. The foraminiferan traces are the sole signs of bioerosion in the studied Nautilus conchs, and neither traces of phototrophic nor other chemotrophic microendoliths were found. While the complete absence of photoautotrophic endoliths would be in good accordance with the life habit of Nautilus, which resides in aphotic deep marine environments and seeks shallower waters in the photic zone for feeding only during night-time, the absence of any microbial bioerosion may also be explained by an effective defence provided by the nautilid periostracum. Following this line of reasoning, the recorded foraminiferan bioerosion traces in turn would identify their trace makers as being specialized in their ability to penetrate the periostracum barrier and to bioerode the shell of modern Nautilus.     

Composition of the summer photosynthetic pico and nanoplankton communities in the Beaufort Sea assessed by T-RFLP and sequences of the 18S rRNA gene from flow cytometry sorted samples

The composition of photosynthetic pico and nanoeukaryotes was investigated in the North East Pacific and the Arctic Ocean with special emphasis on the Beaufort Sea during the MALINA cruise in summer 2009. Photosynthetic populations were sorted using flow cytometry based on their size and pigment fluorescence. Diversity of the sorted photosynthetic eukaryotes was determined using terminal-restriction fragment length polymorphism analysis and cloning/sequencing of the 18S ribosomal RNA gene. Picoplankton was dominated by Mamiellophyceae, a class of small green algae previously included in the prasinophytes: in the North East Pacific, the contribution of an Arctic Micromonas ecotype increased steadily northward becoming the only taxon occurring at most stations throughout the Beaufort Sea. In contrast, nanoplankton was more diverse: North Pacific stations were dominated by Pseudo-nitzschia sp. whereas those in the Beaufort Sea were dominated by two distinct Chaetoceros species as well as by Chrysophyceae, Pelagophyceae and Chrysochromulina spp.. This study confirms the importance of Arctic Micromonas within picoplankton throughout the Beaufort Sea and demonstrates that the photosynthetic picoeukaryote community in the Arctic is much less diverse than at lower latitudes. Moreover, in contrast to what occurs in warmer waters, most of the key pico- and nanoplankton species found in the Beaufort Sea could be successfully established in culture.     

Distributions of three Alexandrium species and their toxins across a salinity gradient suggest an increasing impact of GDA producing A. pseudogonyaulax in shallow brackish waters of Northern Europe

Blooms of Alexandrium spp. are a well-known phenomenon in Northern European waters. While A. tamarense/catenella, and A. pseudogonyaulax have been reported from marine waters, high densities of A. ostenfeldii are mainly observed at lower salinities in North Sea estuaries and the Baltic Sea, suggesting salinity as a driver of Alexandrium species composition and toxin distribution. To investigate this relationship, an oceanographic expedition through a natural salinity gradient was conducted in June 2016 along the coasts of Denmark. Besides hydrographic data, phytoplankton and sediment samples were collected for analyses of Alexandrium spp. cell and cyst abundances, for toxin measurement and cell isolation. Plankton data revealed the predominance of A. pseudogonyaulax at all transect stations while A. ostenfeldii and A. catenella generally contributed a minor fraction to the Alexandrium community. High abundances of A. pseudogonyaulax in the shallow enclosed Limfjord were accompanied by high amounts of goniodomin A (GDA). This toxin was also detected at low abundances along with A. pseudogonyaulax in the North Sea and the Kattegat. Genetic and morphological characterization of established strains showed high similarity of the Northern European population to distant geographic populations. Despite low cell abundances of A. ostenfeldii, different profiles of cycloimines were measured in the North Sea and in the Limfjord. This field survey revealed that salinity alone does not determine Alexandrium species and toxin distribution, but emphasizes the importance of habitat conditions such as proximity to seed banks, shelter, and high nutrient concentrations. The results show that A. pseudogonyaulax has become a prominent member of the Alexandrium spp. community over the past decade in the study area. Analyses of long term monitoring data from the Limfjord confirmed a recent shift to A. pseudogonyaulax dominance. Cyst and toxin records of the species in Kiel Bight suggest a spreading potential into the brackish Baltic Sea, which might lead to an expansion of blooms under future climate conditions.     

The world's smallest whale population?

The North Pacific right whale (Eubalaena japonica) was heavily exploited by both nineteenth century whaling and recent (1960s) illegal Soviet catches. Today, the species remains extremely rare especially in the eastern North Pacific. Here, we use photographic and genotype data to calculate the first mark–recapture estimates of abundance for right whales in the Bering Sea and Aleutian Islands. The estimates were very similar: photographic = 31 (95% CL 23–54), genotyping = 28 (95% CL 24–42). We also estimated the population contains eight females (95% CL 7–18) and 20 males (95% CL 17–37). Although these estimates may relate to a Bering Sea subpopulation, other data suggest that the total eastern North Pacific population is unlikely to be much larger. Its precarious status today—the world''s smallest whale population for which an abundance estimate exists—is a direct consequence of uncontrolled and illegal whaling, and highlights the past failure of international management to prevent such abuses.     

Introductions and developments of oysters in the North Sea area: a review

To replenish the exploited native stocks ofOstrea edulis, imports from almost all European coasts have arrived in the North Sea, particularly in the Dutch Oosterschelde estuary. The American oysterCrassostrea virginica and the Portuguese oysterC. angulata have also been imported into the North Sea several times. However, only the introductions of various genetic strains of the Pacific oysterC. gigas have been of lasting success. Spat from British Columbia (Canada) was first imported to the Oosterschelde in 1964. First spatfalls in this area took place in the warm summers of 1975 and 1976. Further larval outbursts occurred in 1982 and 1989, and good settlements took place on culture plots as well as along the dikes of the Oosterschelde. Since 1977 no more cupped oysters have been imported from overseas. The population maintained itself and was able to spread in a northern direction along the Dutch North Sea coast. In Britain, hatchery-producedC. gigas were transferred to several sites, in the 1970s including the British North Sea coast. Here, occurrence in the wild seems to be rather limited up to now. Into the German Wadden Sea,C. gigas larvae and spat from a Scottish hatchery have been introduced since 1971, as were medium-sized oysters from a variety of European sources in the 1980s. Strong spatfalls on intertidal mussel beds in the northern German Wadden Sea occured in 1991 and 1994. For the introductions ofC. gigas along the west European coasts, precautionary measures to minimize unintentional transfers of associated organisms, as recommended by the ICES Code of Practice in 1994, came too late.