Virus-host protein interactions in RNA viruses

RNA viruses exhibit small-sized genomes that only encode a limited number of viral proteins, but still establish complex networks of interactions with host cell components. Here we summarize recent reports that aim at understanding general features of RNA virus infection networks at the protein level.     

Conservation of salt lakes

Salt lakes have a variety of important uses and values, including especially both economic and scientific ones. These uses and values have been and are increasingly subject to degradation from a variety of impacts: diversion of inflows, pollution, agricultural practices, and introduction of exotic species are among the more important. Recognition of these impacts upon salt lakes has led to some international and national measures for their conservation, but considerably more effort in this direction is needed. Against this background, Mono Lake, California, USA, and the Aral Sea, central Asia, are discussed as two localities which bring into sharp focus the various matters discussed in the paper. Finally, attention is drawn to the need to conserve the Akrotiri Salt Lake, Cyprus.     

Virus-host interactions: new insights from the small RNA world

RNA silencing has a known role in the antiviral responses of plants and insects. Recent evidence, including the finding that the Tat protein of human immunodeficiency virus (HIV) can suppress the host's RNA-silencing pathway and may thus counteract host antiviral RNAs, suggests that RNA-silencing pathways could also have key roles in mammalian virus-host interactions.     

Anostracan cysts found in California salt lakes

The salt lakes of California are home to four genera and eight species of Anostraca. The cysts of most of these species are readily distinguished using a combination of cyst and geographic characters. Cyst identification is a valuable tool that can allow a look at fairy shrimp ecology when adults are not available. For example, fossil anostracan cysts from 500-year-old Mono Lake sediments show more character variation than currently exists in extant Artemia monica, indicating a greater diversity of Anostraca at that time. Continuing desertification, both natural and man-made, in the Mono Lake area over the last 500 years is associated with decreased diversity in the Mono Lake anostracan fauna.     

Spanish salt lakes: Their chemistry and biota

A large number of small saline lakes are distributed throughout Spain. Four main lake districts occur from sea level to 1000 m.a.s.l. Most lakes are temporary because of the arid conditions in the Spanish endorheic areas. Many lakes are situated in Tertiary depressions in NE. and S. Spain. Lake basins were formed in karstic areas by hydrologic and aeolian erosion. Saline lakes in NE. Spain occupy areas isolated between river basins. The major ions encountered in these lakes are usually sodium-chloride and magnesium-sulphate; sodium carbonate or sodium-sulphate rich waters also occur.The biota of Spanish salt lakes is related to that of a larger biogeographical region which includes the Mediterranean countries. The main types of salt lakes in Spain include: (1) temporarily mineralized but not highly saline lakes, salinity is less than 7 g l^-1. Chara canescens, C. aspera, Zanichellia palustris, Daphnia atkinsoni, Mixodiaptomus incrassatus and Arctodiaptomus wierzejskii are the most characteristic organisms. (2) Temporary salt lakes, salinity fluctuates between 7 and 300 g l^-1. Chara galioides, Lamprothamnion papulosum, Daphnia mediterranea, Arctodiaptomus salinus and Cletocamptus retrogressus are the most common species. (3) Permanent salt lakes, Ruppia maritima, Najas marina and Artemia salina are the characteristic organisms.     

Comments on the so-called salt lakes of Greenland

Most athalassic standing waters in Greenland have conductivities < 1 000 μmhos. Those with higher conductivities have salinities mostly < 3 g L⁻¹; they are generally referred to as ‘saline’ within Greenland. Only a single water-body is known with a conductivity of > 10 000 μmhos. Saline waters have Na or Mg as dominant cations, and low concentrations of SO₄. Their biota is very depauperate and apparently comprises a few salinity-tolerant elements of the local freshwater biota. There is no regional assemblage of halophilic species.     

Meristic differences between two conspecific fish populations in Australian salt lakes

Two meristic characters were found to be significantly different in a species of Taeniomembras (Pisces: Atherinidae) from two highly saline inland lakes in South Australia. It is suggested that the differences were induced by salinity differences between the lakes.     

North Atlantic Oscillation synchronizes food-web interactions in central European lakes

A regular and distinct feature of seasonal plankton succession in temperate lakes is the early summer period of algal suppression by herbivores, i.e. the clear water phase. Within the last 30 years the timing of this food-web interaction between algae and herbivores has advanced on average by approximately two weeks in central European lakes due to faster population growth of herbivores in warmer water. Trend and inter-annual variability in clear water timing were strongly related to the climate dynamics of the North Atlantic, i.e. the North Atlantic Oscillation (NAO). Due to its large-scale effects, the NAO synchronized plankton succession in central European lakes, causing a striking temporal coherence of a food-web interaction over several hundreds of kilometers.     

A study of the salt lakes and salt springs of Eyre Peninsula, South Australia

An 18-month-study of 40 saline wetlands, ranging from 6 to 336 g l⁻¹, on the west and southern coasts of Eyre Peninsula yielded 88 species of invertebrates, some aquatic plants and a fish. The invertebrates are taxonomically diverse and include 38 crustaceans, 28 insects, 12 molluscs and significantly an aquatic spider, a nemertean, two polychaetes, two sea anemones, a sponge and a bryzoan. Most were tolerant of wide fluctuations in salinity, there being 51 halobionts, 21 halophils and only 16 salt-tolerant freshwater species. Many invertebrates are restricted to the thalassic springs where marine molluscs dominated. Athalassic wetlands were dominated by crustaceans and were of two basic types—coastal and continental. There is evidence of the former evolving biologically into the later, and for some lakes to be still in transition. There is also evidence of increasing salinity in recent decades and already two lakes exhibit severe secondary salinity. Like other salt lakes in Australia the fauna is regionally distinctive. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users. Guest Editors: J. John & B. Timms Salt Lake Research: Biodiversity and Conservation—Selected papers from the 9th Conference of the International Society for Salt Lake Research     

The salt lakes of western Canada: A paleolimnological overview

The northern Great Plains of western Canada contain many saline and hypersaline lakes. Deadmoose and Waldsea Lakes in south-central Saskatchewan are meromictic, with saline Mg-Na-SO₄-Cl waters overlying denser brines of similar composition. Mineralogical, chemical, palynological, and stable isotope analyses of the sediments in the Waldsea basin indicate the lake was much shallower about 4 000 years ago in response to a warmer and drier climate. Since that time water levels have generally increased in the basin giving rise to higher organic productivity and greater inorganic carbonate precipitation. Within this overall trend there is also evidence of several lower water stages during the last 3 000 years. The stratigraphy preserved in the Deadmoose basin suggests considerably lower water levels about 1 000 years ago.Ceylon Lake, located about 350 km south of the Waldsea-Deadmoose area, is presently a shallow, saline playa. The basin originated about 15 000 years ago as a glacial meltwater spillway. Stratigraphic variation in evaporite and carbonate mineralogy shows that the basin evolved from a relatively low salinity, riverine lake to one in which initially Na-rich and then Mg-rich hypersaline brines dominated.Lake Manitoba is a large, hyposaline lake located in the eastern Great Plains about 700 km from the Deadmoose-Waldsea area. Stable oxygen and carbon isotope analyses of the endogenic carbonates in the basin indicate gradually increasing levels of organic productivity but decreasing temperatures between 9 000 and 5 000 years B.P. Between about 4 000 and 2 000 years ago the isotope ratios suggest relatively stable temperatures followed by a strong decrease during the most recent 2 000 year period.     

Salinity as a determinant of the structure of biological communities in salt lakes

The paper considers the extent to which salinity determines the structure of biological communities (composition and species richness and diversity) in saline lakes, i.e. inland bodies of water with salinities in excess of 3 g l-1. It also considers the extent to which oxygen, ionic composition, pH, hydrological patterns (degree of permanence and impermanence of water), geographical position, palaeoclimatic events, chance, human intervention, and biological interactions especially predation determine biological communities in salt lakes. It suggests that salinity is less significant as a determinant of community structure in salt lakes than has been assumed. This revised version was published online in July 2006 with corrections to the Cover Date.     

The fate of minor alkali elements in the chemical evolution of salt lakes

Alkaline earth elements and alkali metals (Mg, Ca, Na and K) play an important role in the geochemical evolution of saline lakes as the final brine type is defined by the abundance of these elements. The role of major ions in brine evolution has been studied in great detail, but little has been done to investigate the behaviour of minor alkali elements in these systems despite their similar chemical affinities to the major cations. We have examined three major anionic brine types, chloride, sulphate, and bicarbonate-carbonate, in fifteen lakes in North America and Antarctica to determine the geochemical behaviour of lithium, rubidium, strontium, and barium. Lithium and rubidium are largely conservative in all water types, and their concentrations are the result of long-term solute input and concentration through evaporation and/or sublimation. Strontium and barium behaviours vary with anionic brine type. Strontium can be removed in sulphate and carbonate-rich lakes by the precipitation of carbonate minerals. Barium may be removed in chloride and sulphate brines by either the precipitation of barite and perhaps biological uptake.     

Natronorubrum halophilum sp. nov. isolated from two inland salt lakes

Journal of Microbiology - Two halophilic archaeal strains, SHR37T and NEN6, were isolated from salt lakes located in the Tibet and Xinjiang regions of China. The two strains were found to form a...     

Pelagic food web interactions among benthic invertebrates and trout in mountain lakes

1. Benthic chironomid larvae and the amphipod Gammarus lacustris have been observed in the pelagic habitats of many mountain lakes. The main goal of this study was to determine if chironomid larvae and gammarids potentially affect predator–prey and nutrient dynamics in pelagic food webs of mountain lakes. 2. Eighty‐six mountain lakes were surveyed in Alberta and eastern British Columbia during the years 1965–1984, 1991–2004 and 2005–2007. Pelagic chironomid larvae were found in 86% of these lakes, and pelagic gammarids were found in 29% of lakes. Densities of pelagic chironomid larvae were 92% lower in lakes with pelagic gammarids and 76% lower in lakes with trout (P < 0.05). Intraguild predation of trout on gammarids appeared to reduce predation pressure on chironomid larvae. Gammarids consumed in vitro about 1 chironomid per gammarid per day or about 20% of their body mass in chironomid biomass per day. 3. Concentrations of total dissolved P and N, particulate C, and chlorophyll‐a increased with increasing densities of pelagic gammarids and chironomid larvae in situ (R² = 0.14 ± 0.19 SD, P < 0.1) and in vitro (P < 0.001). 4. Our findings suggest that gammarids and chironomid larvae are linked as predators and prey in pelagic food webs, possibly stimulating phytoplankton abundance via nutrient release.     

Virus-host interactomes and global models of virus-infected cells

Novel high-throughput technologies such as yeast two-hybrid and RNA interference (RNAi) screens provide the tools to study interactions between viral proteins and the host on a genomic scale. In this review, we provide an overview of studies in which these technologies were applied and of computational approaches for the analysis of the identified viral interactors in the context of the host cell. The results of these studies illustrate the advantages of integrative systems biology approaches in the investigation of viral pathogens.     

Latitudinal variation in plant–herbivore interactions in European salt marshes

Ecological interactions often vary geographically. Work in salt marshes on the Atlantic Coast of the United States has documented community-wide latitudinal gradients in plant palatability and plant traits that may be driven in part by greater herbivore pressure at low latitudes. To determine if similar patterns exist elsewhere, we studied six taxa of saltmarsh plants ( Atriplex , Juncus , Limonium , Salicornia , Spartina and Suaeda ) at European sites at high (Germany and the Netherlands) and low (Portugal and Spain) latitudes. We conducted feeding assays using both native and non-native consumers, and documented patterns of herbivore damage in the field. As in the United States, high-latitude plants tended to be more palatable than low-latitude plants when offered to consumers in paired feeding assays in the laboratory, although assays with grasshopper consumers were less consistent than those with crab consumers, and plants in the field at low-latitude sites tended to experience greater levels of herbivore pressure than plants at high-latitude sites. Similarly, high-latitude leaf litter was more palatable than litter from low-latitude plants when offered to consumers in paired feeding assays in the laboratory. Latitudinal gradients in plant palatability and herbivore pressure may be a general phenomenon, and may contribute to latitudinal gradients in decomposition processes.