Climate change and disease: bleaching of a chemically defended seaweed

Disease is emerging as an important impact of global climate change, due to the effects of environmental change on host organisms and their pathogens. Climate‐mediated disease can have severe consequences in natural systems, particularly when ecosystem engineers, such as habitat‐formers or top predators are affected, as any impacts can cascade throughout entire food webs. In temperate marine ecosystems, seaweeds are the dominant habitat‐formers on rocky reefs. We investigated a putative bleaching disease affecting Delisea pulchra, a chemically defended seaweed that occurs within a global warming ‘hot‐spot’ and assessed how patterns of this phenomenon were influenced by ocean temperature, solar radiation, algal chemical defences and microbial pathogens. Warmer waters were consistently and positively correlated with higher frequencies of bleaching in seaweed populations, but patterns of bleaching were not consistently influenced by light levels. Bleached thalli had low levels of antibacterial chemical defences relative to healthy conspecifics and this was observed across entire thalli of partially bleached algae. Microbial communities associated with bleached algae were distinct from those on the surfaces of healthy seaweeds. Direct testing of the importance of algal chemical defences, done here for the first time in the field, demonstrated that they protected the seaweed from bleaching. Treatment of algal thalli with antibiotics reduced the severity of bleaching in experimental algae, especially at high water temperatures. These results indicate that bleaching in D. pulchra is the result of temperature‐mediated bacterial infections and highlight the potential for warming to influence disease dynamics by stressing hosts. Understanding the complex ways in which global change may affect important organisms such as habitat‐forming seaweeds, is essential for the management and conservation of natural resources.     

A molecular study of phylogenetic relationships and evolution of antipredator strategies in Australian Diplodactylus geckos, subgenus Strophurus

We present phylogenetic analyses of the lizard genus Diplodactylus subgenus Strophurus using 1646 aligned positions of mitochondrial DNA sequences containing 893 parsimony-informative characters for samples of 12 species of Strophurus and 19 additional Australian gecko species. Sequences from three protein-coding genes (ND1, ND2 and COI) and eight intervening transfer RNA genes were examined using parsimony, maximum-likelihood and Bayesian analyses. Species of Strophurus appeared to form a monophyletic group with the possible exception of S. taenicauda . Strophurus has evolved two distinct defence/display characteristics: caudal glands, which expel an unpalatable substance, and striking mouth colours. Caudal glands appeared to have arisen once in a common ancestor of Strophurus , with dermal augmentation of caudal glands characterizing a subclade within the subgenus. Evolution of yellow and dark-blue mouth colours in Strophurus occurred in the context of diurnal activity and may be interpreted as an augmentation of defensive behavioural displays. Molecular divergence suggests that arboreality evolved in a common ancestor of Oedura and Strophurus approximately 29 Mya and that the caudal glands of Strophurus arose approximately 25 Mya.  © 2004 The Linnean Society of London, Biological Journal of the Linnean Society , 2004, 82 , 123–138.     

Molecular evidence for ten species and Oligo-Miocene vicariance within a nominal Australian gecko species (<Emphasis Type=Italic>Crenadactylus ocellatus</Emphasis>, Diplodactylidae)

Background  

Molecular studies have revealed that many putative 'species' are actually complexes of multiple morphologically conservative, but genetically divergent 'cryptic species'. In extreme cases processes such as non-adaptive diversification (speciation without divergent selection) could mask the existence of ancient lineages as divergent as ecologically and morphologically diverse radiations recognised as genera or even families in related groups. The identification of such ancient, but cryptic, lineages has important ramifications for conservation, biogeography and evolutionary biology. Herein, we use an integrated multilocus genetic dataset (allozymes, mtDNA and nuclear DNA) to test whether disjunct populations of the widespread nominal Australian gecko species Crenadactylus ocellatus include distinct evolutionary lineages (species), and to examine the timing of diversification among these populations.     

The development of cephalic armor in the tokay gecko (Squamata: Gekkonidae: Gekko gecko)

Armored skin resulting from the presence of bony dermal structures, osteoderms, is an exceptional phenotype in gekkotans (geckos and flap-footed lizards) only known to occur in three genera: Geckolepis, Gekko, and Tarentola. The Tokay gecko (Gekko gecko LINNAEUS 1758) is among the best-studied geckos due to its large size and wide range of occurrence, and although cranial dermal bone development has previously been investigated, details of osteoderm development along a size gradient remain less well-known. Likewise, a comparative survey of additional species within the broader Gekko clade to determine the uniqueness of this trait has not yet been completed. Here, we studied a large sample of gekkotans (38 spp.), including 18 specimens of G. gecko, using X-rays and high-resolution computed tomography for visualizing and quantifying the dermal armor in situ. Results from this survey confirm the presence of osteoderms in a second species within this genus, Gekko reevesii GRAY 1831, which exhibits discordance in timing and pattern of osteoderm development when compared with its sister taxon, G. gecko. We discuss the developmental sequence of osteoderms in these two species and explore in detail the formation and functionality of these enigmatic dermal ossifications. Finally, we conducted a comparative analysis of endolymphatic sacs in a wide array of gekkotans to explore previous ideas regarding the role of osteoderms as calcium reservoirs. We found that G. gecko and other gecko species with osteoderms have highly enlarged endolymphatic sacs relative to their body size, when compared to species without osteoderms, which implies that these membranous structures might fulfill a major role of calcium storage even in species with osteoderms.     

New Zealand geckos (Diplodactylidae): Cryptic diversity in a post-Gondwanan lineage with trans-Tasman affinities

We used a multi-gene approach to assess the phylogenetic relationships of New Zealand diplodactylid geckos to their Australian and New Caledonian relatives and to one another. Data from nuclear (RAG-1, PDC) and mitochondrial (ND2, 16S) genes from >180 specimens representing all 19 recognized New Zealand taxa and all but two of 20 putatively new species suggested by previous studies were analyzed using Maximum Parsimony, Maximum Likelihood and Bayesian inference. All analyses retrieved a monophyletic New Zealand clade, most closely related to the Australian Diplodactylidae exclusive of Pseudothecadactylus. Hoplodactylus is paraphyletic and composed of two morphological groups: a broad-toed clade, consisting of the island-restricted, largest extant species, Hoplodactylus duvaucelii, and the species-rich, wide-ranging Hoplodactylus maculatus clade; and a narrow-toed clade, comprising five monophyletic subgroups: Naultinus, the Hoplodactylus pacificus and Hoplodactylus granulatus clades, and the distinctive species Hoplodactylus rakiurae and Hoplodactylus stephensi. Each of these lineages is here recognized at the generic level. Our data support recognition of 16 new species (36 total), and five new or resurrected genera (seven total). The New Zealand diplodactylid radiation split from its Australian relatives 40.2mya (95% highest posterior density estimate 28.9-53.5), after the opening of the Tasman Sea. Their distribution cannot, therefore, be regarded as derived as a result of Gondwanana vicariance. The age of the New Zealand crown group, 24.4mya (95% highest posterior density estimate 15.5-33.8), encompasses the period of the 'Oligocene drowning' of New Zealand and is consistent with the hypothesis that New Zealand was not completely inundated during this period. Major lineages within New Zealand geckos diverged chiefly during the mid- to late Miocene, probably in association with a suite of geological and climatological factors that have characterized the region's complex history.     

Biogeography and the evolution of flightlessness in a radiation of Hawaiian moths (Xyloryctidae: Thyrocopa)

Aim Although the ability to fly confers benefits to most insects, some taxa have become secondarily flightless. Insect flightlessness may be more likely to evolve in environments such as islands and other windswept and alpine areas, but this prediction has rarely been tested while controlling for phylogenetic effects. Here we present a phylogeny for the endemic Hawaiian Lepidoptera genus Thyrocopa, which has two flightless species that occur in alpine areas on Maui and Hawaii islands, in order to determine whether the flightless species are sister to each other or represent separate losses of flight. We also explore divergence times and biogeographic patterns of inter‐island colonization in Thyrocopa, and present the first Hawaiian study to sample a genus from nine islands. Location The Hawaiian Islands. Methods The phylogeny is composed of 70 individuals (including 23 Thyrocopa species and 7 outgroup species) sequenced for portions of cytochrome c oxidase subunit I, elongation factor 1α and wingless genes, for a total of 1964 base pairs, and was estimated using both parsimony (paup *) and Bayesian inference (Mr Bayes ). Divergence times were estimated using the beast software package. Results Our results indicate that two independent invasions of alpine habitats with concomitant loss of flight have occurred in Thyrocopa. Based on current taxon sampling, Thyrocopa colonized the Hawaiian Islands slightly before the formation of Kauai. In terms of overall patterns of diversification, subclades generally follow a progression from older to younger islands. The genus has the greatest number of species on Kauai, with species numbers generally decreasing with decreasing island age. Main conclusions Loss of flight ability has evolved twice in a short period of geological time in Thyrocopa, perhaps as a result of low temperatures, high winds and/or a lack of predation pressure. However, several other Thyrocopa species that live on small islands with consistently high winds, such as Necker and Nihoa islands, retain the ability to fly.     

Niche evolution and diversification in a Neotropical radiation of birds (Aves: Furnariidae)

Rapid diversification may be caused by ecological adaptive radiation via niche divergence. In this model, speciation is coupled with niche divergence and lineage diversification is predicted to be correlated with rates of niche evolution. Studies of the role of niche evolution in diversification have generally focused on ecomorphological diversification but climatic‐niche evolution may also be important. We tested these alternatives using a phylogeny of 298 species of ovenbirds (Aves: Furnariidae). We found that within Furnariidae, variation in species richness and diversification rates of subclades were best predicted by rate of climatic‐niche evolution than ecomorphological evolution. Although both are clearly important, univariate regression and multivariate model averaging more consistently supported the climatic‐niche as the best predictor of lineage diversification. Our study adds to the growing body of evidence, suggesting that climatic‐niche divergence may be an important driver of rapid diversification in addition to ecomorphological evolution. However, this pattern may depend on the phylogenetic scale at which rate heterogeneity is examined.     

Complete mitochondrial genome of the red-spotted tokay gecko (Gekko gecko, Reptilia: Gekkonidae): comparison of red- and black-spotted tokay geckos

Here, we sequenced the complete mitochondrial genome of the red-spotted tokay gecko (Squamata: Gekkonidae). The genome is 16,590 bp in size. Its gene arrangement pattern was identical with that of black-spotted tokay gecko. We compared the mitochondrial genome of red-spotted tokay gecko with that of the black-spotted tokay gecko. Nucleotide sequence of the two whole mitochondrial genomes was 97.99% similar, and the relatively high similarity seems to indicate that they may be separated at the subspecies level. The information of mitochondrial genome comparison of the two morphological types of tokay gecko is discussed in detail.     

Morphological evolution in the day gecko Phelsuma sundbergi in the Seychelles: a multivariate study

Geographic variation was investigated in populations of the day gecko Phelsuma sundbergi from 22 islands in the Seychelles, using multivariate ordination procedures. Multiple group principal components analysis was used to negate ontogenetic variation. Seventy-eight characters from three character systems (body proportions, scalation and colour pattern) were analysed from 349 specimens. Three phenetic aggregations of granitic island populations were detected from the northwestern, northeastern and southern island groups. A comparison of the results from the three character systems analysed separately suggests that the separation of the southern form preceded that of the northern forms. Colour pattern characters reflect this closely, while body proportions and scalation characters follow evolution of body size. The populations of Phelsuma sundbergi on the coralline islands are not well differentiated from the races on the granitic islands, and probably represent recent colonizations or introductions by man.     

Trends in the ecological strategies and evolution of millipedes (Diplopoda)

Five main morphotypes (polyxenoid, glomeroid, juloid, polydesmoid, and platydesmoid) are denoted and five ecomorphotypes, i.e. life‐forms (stratobionts, troglobionts, geobionts, subcorticolous xylobionts, and epiphytobionts) are oudined in the Class Diplopoda. Their distribution and that of separate higher taxa show a number of marked ecological and geographical trends. The Diplopoda as a whole is believed to be originally a forest floor‐dwelling group, with stratobionts dominating everywhere, this life‐form having given rise to all other derivative, apparently synchronously evolved life‐forms. The poor development of the derived life‐forms points to their recent evolution, probably brought about by die great climatic changes of the last 2–3 Ma. The European fauna is characteristically dominated by the life‐form of stratobionts and in most areas by the juloid morphotype. However, the distribution of orders is strongly skewed. The habitats in Europe with richest millipede faunas seem to be temperate forests in the Atlantic zone and central mountain chains, where the Order Chordeumatida is strongly represented. This area contains several long‐term, or Ice Age, refugia. Further to the north, soudi and east, especially in open landscapes, along with an increasingly continental/Mediterranean climate, representatives of the juloid morphotype, mainly members of the Order Julida, become proportionately more common, while general species diversity falls. The ecological strategies of millipedes are rooted both in the group's phylogeny and in die Earth's history. In Europe diis history is peculiar owing to the east‐west lie of the principal mountain chains, and repeated glaciations have led to the development of a mixed, fully migratory, recent European faunal kernel, or nucleus, which is forced south and cornered in die largely mountainous western and central parts of the Continent during glaciations. Many local endemics have evolved in these areas, including a substantial proportion of cavernicolous species.     

The evolution of the Indian Ocean parrots (Psittaciformes): extinction, adaptive radiation and eustacy

Parrots are among the most recognisable and widely distributed of all bird groups occupying major parts of the tropics. The evolution of the genera that are found in and around the Indian Ocean region is particularly interesting as they show a high degree of heterogeneity in distribution and levels of speciation. Here we present a molecular phylogenetic analysis of Indian Ocean parrots, identifying the possible geological and geographical factors that influenced their evolution. We hypothesise that the Indian Ocean islands acted as stepping stones in the radiation of the Old-World parrots, and that sea-level changes may have been an important determinant of current distributions and differences in speciation. A multi-locus phylogeny showing the evolutionary relationships among genera highlights the interesting position of the monotypic Psittrichas, which shares a common ancestor with the geographically distant Coracopsis. An extensive species-level molecular phylogeny indicates a complex pattern of radiation including evidence for colonisation of Africa, Asia and the Indian Ocean islands from Australasia via multiple routes, and of island populations ‘seeding’ continents. Moreover, comparison of estimated divergence dates and sea-level changes points to the latter as a factor in parrot speciation. This is the first study to include the extinct parrot taxa, Mascarinus mascarinus and Psittacula wardi which, respectively, appear closely related to Coracopsis nigra and Psittacula eupatria.     

Preliminary investigations of hybridization/reticulate evolution in Guaranidrilus (Enchytraeidae: Oligochaeta)

The identification of gut diverticula at 7/8 as a synapomorphy and recognition of all taxa of Guaranidrilus has been obscured by losses of gut diverticula within the lineage. The homoplastic occurrence of basally unpaired peptonephridia in some enchytraeid species has similarly obscured the limits of Hemienchytraeus. Taxa with unpredictable relationships, morphogenic irregularities in some reproductive structures, and, apparently, modified modes of reproduction, suggest the possibilities of hybridization between taxa with both close and distant relationships.     

Conversion of a cyclodextrin glucanotransferase into an alpha-amylase: assessment of directed evolution strategies

Glycoside hydrolase family 13 (GH13) members have evolved to possess various distinct reaction specificities despite the overall structural similarity. In this study we investigated the evolutionary input required to effeciently interchange these specificities and also compared the effectiveness of laboratory evolution techniques applied, i.e., error-prone PCR and saturation mutagenesis. Conversion of our model enzyme, cyclodextrin glucanotransferase (CGTase), into an alpha-amylase like hydrolytic enzyme by saturation mutagenesis close to the catalytic core yielded a triple mutant (A231V/F260W/F184Q) with the highest hydrolytic rate ever recorded for a CGTase, similar to that of a highly active alpha-amylase, while cyclodextrin production was virtually abolished. Screening of a much larger, error-prone PCR generated library yielded far less effective mutants. Our results demonstrate that it requires only three mutations to change CGTase reaction specificity into that of another GH13 enzyme. This suggests that GH13 members may have diversified by introduction of a limited number of mutations to the common ancestor, and that interconversion of reaction specificites may prove easier than previously thought.     

Lineage diversification and morphological evolution in a large-scale continental radiation: the neotropical ovenbirds and woodcreepers (aves: Furnariidae)

Patterns of diversification in species-rich clades provide insight into the processes that generate biological diversity. We tested different models of lineage and phenotypic diversification in an exceptional continental radiation, the ovenbird family Furnariidae, using the most complete species-level phylogenetic hypothesis produced to date for a major avian clade (97% of 293 species). We found that the Furnariidae exhibit nearly constant rates of lineage accumulation but show evidence of constrained morphological evolution. This pattern of sustained high rates of speciation despite limitations on phenotypic evolution contrasts with the results of most previous studies of evolutionary radiations, which have found a pattern of decelerating diversity-dependent lineage accumulation coupled with decelerating or constrained phenotypic evolution. Our results suggest that lineage accumulation in tropical continental radiations may not be as limited by ecological opportunities as in temperate or island radiations. More studies examining patterns of both lineage and phenotypic diversification are needed to understand the often complex tempo and mode of evolutionary radiations on continents.     

Daily patterns of metabolic rate among New Zealand lizards (Reptilia: Lacertilia: Diplodactylidae and Scincidae)

In addition to the effects of temperature fluctuations on metabolic rate, entrained endogenous rhythms in metabolism, which are independent of temperature fluctuations, may be important in overall energy metabolism in ectotherms. Daily entrained endogenous rhythms may serve as energy-conserving mechanisms during an animal's active or inactive phase. However, because nocturnal lizards often take advantage of thermal opportunities during the photophase (light), their daily metabolic rhythms may be less pronounced than those of diurnal species. We measured the rate of oxygen consumption (VO(2)) as an index of metabolic rate of eight temperate lizard species (four nocturnal, three diurnal, and one crepuscular/diurnal; n = 7-14) over 24 h at 13 degrees C and in constant darkness to test whether daily patterns (including amplitude, magnitude, and time of peak VO(2)) of metabolic rate in lizards differ with activity period. We also tested for phylogenetic differences in metabolic rate between skinks and geckos. Three daily patterns were evident: 24-h cycle, 12-h cycle, or no daily cycle. The skink Cyclodina aenea has a 12-h crepuscular pattern of oxygen consumption. In four other species, VO(2) increased with, or in anticipation of, the active part of the day, but three species had rhythms offset from their active phase. Although not correlated with activity period or phylogeny, amplitude of VO(2) may be correlated with whether a species is temperate or tropical. In conclusion, the metabolic rate of many species does not always correlate with the recorded activity period. The dichotomy of ecology and physiology may be clarified by more in-depth studies of species behaviors and activity periods.     

Phylogeny and evolution of life history strategies of the parasitic barnacles (Crustacea, Cirripedia, Rhizocephala)

The barnacles (Crustacea, Cirripedia) consist of three well-defined orders: the conventional filter-feeding barnacles (Thoracica), the burrowing barnacles (Acrothoracica), and the parasitic barnacles (Rhizocephala). Thoracica and Acrothoracica feed by catching food particles from the surrounding seawater using their thoracic appendages while members of Rhizocephala are exclusively parasitic. The parasite consists of a sac-shaped, external reproductive organ situated on the abdomen of its crustacean host and a nutrient-absorbing root system embedded into the heamolymph of the host. In order to resolve the phylogenetic relationship of the order Rhizocephala and elucidate the evolution of the different life history strategies found within the Rhizocephala, we have performed the first comprehensive phylogenetic analysis of the group. Our results indicate that Rhizocephala is monophyletic with a filter-feeding barnacle-like ancestor. The host-infective stage, the kentrogon larva, inserted in the lifecycle of the rhizocephalan suborder, Kentrogonida, is shown to be ancestral and most likely a homologue of the juvenile stage of a conventional thoracican barnacle. The mode of host inoculation found in the suborder Akentrogonida, where the last pelagic larval stage directly injects the parasitic material into the heamolymph of the host is derived, and has evolved only once within the Rhizocephala. Lastly, our results show that the ancestral host for extant rhizocephalans appears to be the anomuran crustaceans (Anomura), which includes hermit crabs and squat lobsters.     

Seasonal acclimatization in metabolic rate of the fan-fingered gecko,Ptyodactylus hasselquistii (Reptilia: Gekkonidae)

The resting metabolic rate of the fan-fingered gecko Ptyodactylus hasselquistii of various body masses was determined in relation to ambient temperatures ranging from 20 to 35°C during winter and summer acclimatization. Oxygen consumption (ml g⁻¹ h⁻¹) decreased with increasing mass at each temperature. The intraspecific exponents of body mass in relation to metabolic rate ranged from 0.62 to 0.79. Winter-acclimatized geckos had significantly lower metabolic rates than summer-acclimatized geckos at different temperatures, especially at low temperature (20°C). The pattern of acclimatization exhibited by P. hasselquistii may conserve energy during inactivity in winter and make activity more easily achieved during active seasons.     

Associated evolution of fruit size,fruit colour and spines in Neotropical palms

Understanding how ecological interactions have shaped the evolutionary dynamics of species traits remains a challenge in evolutionary ecology. Combining trait evolution models and phylogenies, we analysed the evolution of characters associated with seed dispersal (fruit size and colour) and herbivory (spines) in Neotropical palms to infer the role of these opposing animal–plant interactions in driving evolutionary patterns. We found that the evolution of fruit colour and fruit size was associated in Neotropical palms, supporting the adaptive interpretation of seed‐dispersal syndromes and highlighting the role of frugivores in shaping plant evolution. Furthermore, we revealed a positive association between fruit size and the presence of spines on palm leaves, bracteas and stems. We hypothesize that interactions between palms and large‐bodied frugivores/herbivores may explain the evolutionary relationship between fruit size and spines. Large‐bodied frugivores, such as extinct megafauna, besides consuming the fruits and dispersing large seeds, may also have consumed the leaves or damaged the plants, thus simultaneously favouring the evolution of large fruits and defensive structures. Our findings show how current trait patterns can be understood as the result of the interplay between antagonistic and mutualistic interactions that have happened throughout the evolutionary history of a clade.