Phylogeny of the North American catfish family Ictaluridae (Teleostei: Siluriformes) combining morphology,genes and fossils

We performed the first combined‐data phylogenetic analysis of ictalurids including most living and fossil species. We sampled 56 extant species and 16 fossil species representing outgroups, the seven living genera, and the extinct genus ?Astephus long thought to be an ictalurid. In total, 209 morphological characters were curated and illustrated in MorphoBank from published and original work, and standardized using reductive coding. Molecular sequences harvested from GenBank for one nuclear and four mitochondrial genes were combined with the morphological data for total evidence analysis. Parsimony analysis recovers a crown clade Ictaluridae composed of seven living genera and numerous extinct species. The oldest ictalurid fossils are the Late Eocene members of Ameiurus and Ictalurus. The fossil clade ?Astephus placed outside of Ictaluridae and not as its sister taxon. Previous morphological phylogenetic studies of Ictaluridae hypothesized convergent evolution of troglobitic features among the subterranean species. In contrast, we found morphological evidence to support a single clade of the four troglobitic species, the sister taxon of all ictalurids. This result holds whether fossils are included or not. Some previously published clock‐based age estimates closely approximate our minimum ages of clades.     

Phylogenetic revision of the Hippasterinae (Goniasteridae; Asteroidea): systematics of deep sea corallivores,including one new genus and three new species

The Hippasterinae is a subfamily within the Goniasteridae, consisting of five genera and 26 species, which occur in cold‐water settings ranging from subtidal to abyssal depths. All known genera were included in a cladistic analysis resulting in two most parsimonious trees, supporting the Hippasterinae as monophyletic. Our review supports Sthenaster emmae gen. et sp. nov. as a new genus and species from the tropical Atlantic and two new Evoplosoma species, Evoplosoma claguei sp. nov. and Evoplosoma voratus sp. nov. from seamounts in the North Pacific. Hippasteria caribaea is reassigned to the genus Gilbertaster, which previously contained a single Pacific species. Our analysis supports Evoplosoma as a derived deep water lineage relative to its continental‐shelf, shallow water sister taxa. The genus Hippasteria contains approximately 15 widely distributed, but similar‐looking species, which occur in the northern and southern hemispheres. Except for Gilbertaster, at least one species in each genus has been observed or is inferred to prey on deep‐sea corals, suggesting that this lineage is important to the conservation of deep‐sea coral habitats. The Hippasterinae shares several morphological similarities with Circeaster and Calliaster, suggesting that they may be related. © 2010 The Linnean Society of London, Zoological Journal of the Linnean Society, 2010, 160 , 266–301.     

Phylogeny of the bee family Megachilidae (Hymenoptera: Apoidea) based on adult morphology

Phylogenetic relationships within the bee family Megachilidae are poorly understood. The monophyly of the subfamily Fideliinae is questionable, the relationships among the tribes and subtribes in the subfamily Megachilinae are unknown, and some extant genera cannot be placed with certainty at the tribal level. Using a cladistic analysis of adult external morphological characters, we explore the relationships of the eight tribes and two subtribes currently recognised in Megachilidae. Our dataset included 80% of the extant generic‐level diversity, representatives of all fossil taxa, and was analysed using parsimony. We employed 200 characters and selected 7 outgroups and 72 ingroup species of 60 genera, plus 7 species of 4 extinct genera from Baltic amber. Our analysis shows that Fideliinae and the tribes Anthidiini and Osmiini of Megachilinae are paraphyletic; it supports the monophyly of Megachilinae, including the extinct taxa, and the sister group relationship of Lithurgini to the remaining megachilines. The Sub‐Saharan genus Aspidosmia, a rare group with a mixture of osmiine and anthidiine features, is herein removed from Anthidiini and placed in its own tribe, Aspidosmiini, new tribe . Protolithurgini is the sister of Lithurgini, both placed herein in the subfamily Lithurginae; the other extinct taxa, Glyptapina and Ctenoplectrellina, are more basally related among Megachilinae than Osmiini, near Aspidosmia, and are herein treated at the tribal level. Noteriades, a genus presently in the Osmiini, is herein transferred to the Megachilini. Thus, we recognise four subfamilies (Fideliinae, Pararhophitinae, Lithurginae and Megachilinae) and nine tribes in Megachilidae. We briefly discuss the evolutionary history and biogeography of the family, present alternative classifications, and provide a revised key to the extant tribes of Megachilinae.     

Evolution of fossil and living spider flies based on morphological and molecular data (Diptera,Acroceridae)

The phylogeny of spider flies is presented based on an analysis of DNA sequence data combined with morphological characters for both living and fossil species. We sampled 40 extant and extinct genera across all major lineages of Acroceridae, which were compared with outgroup taxa from various lower brachyceran families. In all, 81 morphological characters of 60 extant and 10 extinct ingroup species were combined with 7.1 kb of DNA sequences of two nuclear (CAD and 28S rDNA) and two mitochondrial genes (COI and 16S rDNA). Results strongly support the monophyly of Acroceridae, with major clades contained within classified here in five extant subfamilies (Acrocerinae, Cyrtinae stat. rev. , Ogcodinae stat. rev. , Panopinae and Philopotinae) and one extinct subfamily, Archocyrtinae. The evolution of important spider fly traits is discussed, including genitalia and wing venation. The status of the enigmatic Psilodera Gray and Pterodontia Gray as members of the Panopinae is confirmed based on both molecular and morphological data.     

A new lacazelline species (Brachiopoda,Recent) from the Maldive Islands,Indian Ocean

A new lacazelline brachiopod species is described from reef caves in the outer reef slope zone off Addu and South Male atolls in the Maldive Islands, Indian Ocean. Based on anatomical features of the soft parts, shell morphology and shell microstructure the new taxon is assigned to the genus Ospreyella Lüter and Wörheide 2003 in the subfamily Lacazellinae of the family Thecideidae. This new species, here named O. maldiviana and representing the first occurrence of the genus in the Indian Ocean, is compared with the type species O. depressa Luter from Osprey Reef, Coral Sea, Australia. Comparisons are made between Ospreyella (now two species) and the other extant lacazelline genera Lacazella Munier‐Chalmas (three species) and Pajaudina Logan (one species).     

Phylogeny,classification and evolution of the water scavenger beetle tribe Hydrobiusini inferred from morphology and molecules (Coleoptera: Hydrophilidae: Hydrophilinae)

The water scavenger beetle tribe Hydrobiusini contains 47 species in eight genera distributed worldwide. Most species of the tribe are aquatic, although several species are known to occur in waterfalls or tree mosses. Some members of the tribe are known to communicate via underwater stridulation. While recent morphological and molecular‐based phylogenies have affirmed the monophyly of the tribe as currently circumscribed, doubts remain about the monophyly of included genera. Here we use morphological and molecular data to infer a species‐level phylogeny of the Hydrobiusini. The monophyly of the tribe is decisively supported, as is the monophyly of most genera. The genus Hydrobius was found to be polyphyletic, and as a result the genus Limnohydrobius stat. rev. is removed from synonymy with Hydrobius, yielding three new combinations: L. melaenus comb.n. , L. orientalis comb.n. , and L. tumbius comb.n. Recent changes to the species‐level taxonomy of Hydrobius are reviewed. The morphology of the stridulatory apparatus has undergone a single remarkable transformation within the lineage, from a simple, unmodified pars stridens to one that is highly organized and complex. We present an updated key to genera, revised generic diagnoses and a list of the known distributions for all species within the tribe.     

Alavesia Waters and Arillo–a Cretaceous‐era genus discovered extant on the Brandberg Massif,Namibia (Diptera: Atelestidae)

Two new extant species of the fossil genus Alavesia Waters & Arillo (A. brandbergensis sp.n. and A. daura sp.n. ) are described from the Brandberg Massif, Namibia. The genus is reassigned to the family Atelestidae (subfamily Atelestinae) on the basis of male terminalia (elongate gonocoxal apodemes, ventral apodemes, subapical surstylus), female terminalia (absence of tergum 10) and a three‐articled stylus. This is the first record of Atelestidae from the Afrotropical Region. A genus‐level phylogeny of the Atelestidae is resolved, in which Alavesia is the sister genus to the remaining genera of the Atelestinae. The biogeographic history of the genus is briefly discussed, as is the significance of this and other relict Diptera on the Brandberg.     

Silurian craniide brachiopods from Gotland

Seven craniide brachiopod genera are described from the Silurian (Wenlock–Ludlow) of Gotland, including one new genus and five new species. The new genus and species Thulecrania septicostata is unique among Silurian craniides as it possesses solid spines. The new species Lepidocrania multilamellosa is the first Silurian record of this poorly known Permian genus. The problematic North American Propatella Grubbs, 1939 , was originally described as a gastropod, but the new species Propatella palmaria from Gotland shows that it is a craniide with sutured hollow spines of a type not previously recorded from Silurian craniides. The dorsal valves of the new species Valdiviathyris? bicornis are remarkably similar to those of the type species and represent the first possible Palaeozoic record of this poorly known extant craniide. This first systematic study of craniide brachiopods from the Silurian of Gotland shows that the diversity is relatively high as compared to other known Silurian craniide faunas, but a more thorough comparison is not possible due to the lack of data from most parts of the world. The new data from Gotland support the view that the craniides were not affected by the end‐Ordovician extinction.     

A new terrestrial amphipod from tertiary amber deposits of Chiapas province,Southern Mexico

Transitroides morsei new genus, new species, is described from late Oligocene Early Miocene amber deposits of Chiapas Province from southern Mexico. This new taxon is the first known fossil member of the amphipod family Talitridae and superfamily Talitroidea. It appears intermediate between regional extant palustral (salt‐marsh) genera and fully terrestrial landhoppers of the genus Caribitroides. These beetle‐like crustaceans form a significant part of the forest‐floor leaf‐litter communities in some tropical parts of the globe. Extant terrestrial amphipods occur in south‐central Mexico and adjacent rain forest habitats in Central America and the Caribbean. Their occasional use of arboreal habitats in search for decaying organic matter, which serves as food, explains their occurrence in fossilized resin.     

Phylogeny of the family Sialidae (Insecta: Megaloptera) inferred from morphological data,with implications for generic classification and historical biogeography

Sialidae (alderflies) is a family of the holometabolous insect order Megaloptera, with ca. 75 extant species in eight genera distributed worldwide. Alderflies are a group of “living fossils” with a long evolutionary history. The oldest fossil attributed to Sialidae dates back to the Early Jurassic period. Further, the global distribution of modern‐day species shows a remarkably disjunctive pattern. However, due to the rareness of most species and scarcity of comprehensive taxonomic revisions, the phylogeny of Sialidae remains largely unexplored, and the present classification system is in great need of renewal. Here we reconstruct the first phylogeny for Sialidae worldwide based on the most comprehensive sampling and broadest morphological data ever presented for this group of insects. All Cenozoic alderflies belong to a monophyletic clade, which may also include the Early Jurassic genus ?Dobbertinia, and the Late Jurassic genus ?Sharasialis is their putative sister taxon. Two subfamilies of Sialidae are proposed, namely ?Sharasialinae subfam. nov. and Sialidinae. Austrosialis is the sister of all other extant genera, an assemblage which comprises three monophyletic lineages: the Stenosialis lineage, the Ilyobius lineage, and the Sialis lineage. The revised classification of Sialidae is composed of 12 valid genera and 87 valid species. Ilyobius and Protosialis are recognized as valid generic names, while Nipponosialis is treated as a synonym of Sialis. Reconstruction of the ancestral area proposes a global distribution of alderflies in Pangaea before their diversification. The generic diversification of alderflies might have occurred before the breakup of Pangaea, but the divergence of some lineages or genera was probably promoted by the splitting of this supercontinent.     

Phylogeny,classification and divergence times of pygmy leaf‐mining moths (Lepidoptera: Nepticulidae): the earliest lepidopteran radiation on Angiosperms?

Nepticulidae represent one of the early diverging Lepidoptera lineages, and the family currently comprises over 850 described species. The larvae of the vast majority of the species are leaf miners on Angiosperms and highly monophagous, which has led to persistent ideas on coevolution with their plant hosts. We present here a molecular phylogeny based on eight gene fragments from 355 species, representing 20 out of 22 extant Nepticulidae genera. Using two fossil calibration points, we performed molecular dating to place the origin of the family in the Early Cretaceous, before the main Angiosperm diversification. Based on our results we propose a new classification, abandoning all ranks between family and genus, as well as subgenera to allow for a stable classification. The position of Enteucha Meyrick within Nepticulidae remains somewhat ambiguous, and the species‐rich cosmopolitan genus Stigmella Schrank, with nearly half of all described Nepticulidae, requires further study. Ectoedemia Busck, Zimmermannia Hering, Acalyptris Meyrick, Etainia Beirne, Parafomoria Borkowski, Muhabbetana Koçak & Kemal and Fomoria Beirne appear to have diversified in a relatively short evolutionary period, leading to short branches in the molecular phylogeny and unclear suprageneric relations. Otherwise support values throughout the phylogeny are mostly high and the species groups, genera and higher clades are discussed in respect of their supporting morphological and life‐history characters. Wing venation characters are confirmed to be mostly reliable and relevant for Nepticulidae classification, but some other previously used characters require reinterpretation. The species groups of most genera are recovered, but only partly so in the large genus Stigmella. The molecular dating results are compared with existing knowledge on the timing of the Angiosperm radiation and reveal that the diversification of Nepticulidae could largely have been contemporaneous with their hosts, although some of the genera restricted to a single plant family appear to have begun to diversify before their hosts.     

Molecular phylogeny of flat‐footed flies (Diptera: Platypezidae): main clades supported by new morphological evidence

The molecular phylogeny of flat‐footed flies is inferred from analysis of DNA sequence data from the five mitochondrial genes 12S, 16S, COI, COII and CytB, and the nuclear gene 28S and discussed with the recent systematics based on morphological features. The Bayesian inference, maximum likelihood and maximum parsimony analyses included 42 species of 18 genera, representing all four extant subfamilies (Microsaniinae, Melanderomyiinae, Callomyiinae and Platypezinae) and all known genera except one (Metaclythia). Representatives of the brachycerous taxa Lonchopteridae, Phoridae, Sciadocerinae (Phoridae) and Opetiidae are used as outgroups, and Lonchoptera was used to root the trees. Our results show Platypezidae consisting of two well‐supported clades, the first with the subfamilies Melanderomyiinae + Callomyiinae and the second formed by subfamily Platypezinae. Genus Microsania was resolved as a separate lineage distant from Platypezidae which clustered with Opetiidae as its sister group, both together forming a sister group to Platypezidae. At the generic level, the genus Agathomyia proved not to be monophyletic in any of the analyses. The species Chydaeopeza tibialis is sister to Agathomyia sexmaculata, and consequently, the genus Chydaeopeza Shatalkin, 1992 is a new junior synonym of Agathomyia Verrall, 1901. Bifurcated setae on legs of adult Platypezidae are documented as a new synapomorphy of the family, exclusive of Microsania. Outstretched wings and only a small overlap of their surfaces at resting position are considered a new synapomorphy for the subfamily Platypezinae. Other phylogenetically important characters defining main clades are documented, and their relevance/validity in phylogenetic studies is discussed. The current systematic concept of Platypezidae is discussed, and new phylogenetic hypotheses are proposed.     

Past and present diversity and distribution in the parasitic wasp family Megalyridae (Hymenoptera)

The phylogenetic relationships of extant and extinct Megalyridae are analysed at the genus level. The dataset comprises seven outgroup taxa, all eight extant genera and a number of extinct taxa that have been associated with Megalyridae, including two genera from Maimetshidae, whose affinity with Megalyridae is uncertain. Analytical results are unstable because some of the fossil taxa have many missing entries. The most stable results are produced when the maimetshid taxa and Cretodinapsis are excluded. When included, these taxa fall outside crown‐group Megalyridae, the maimetshid taxa being the sister of Orthogonalys (Trigonalidae). Based on the results of our analyses, we synonymize the fossil genera Rubes Perrichot n.syn . and Ukrainosa Perrichot & Perkovsky n.syn . with Prodinapsis, creating the new combinations Prodinapsis bruesi n.comb . and Prodinapsis prolata n.comb . When comparing past and present distributions of Megalyridae with the results of the phylogenetic analyses, it is evident that the genera radiated in the Mesozoic, and that the family as a whole was much more widespread then. The present‐day distribution is essentially relictual, with range contraction since the early Tertiary probably being the result of climate deterioration, which caused the disappearance of tropical forests throughout the Palaearctic.     

Phylogeny and taxonomy of the enigmatic genus Petalidium (Decapoda,Sergestidae), with biological remarks

Petalidium (Decapoda: Dendrobranchiata: Sergestidae) is one of the least known genera of pelagic decapods. On the basis of collections taken during Dana Expedition 1920–22 and 1928–30, we revise the morphology of the genus. To understand the taxonomic status and position of Petalidium within other sergestid genera, we used 150 morphological characters (127 binary, 23 multistate). Three recognized species of Petalidium and eighteen type species representing all other genera of Sergestidae were included as terminals. Characters were polarized using Lucifer typus (Luciferidae: Sergestoidea) and Aristeomorpha foliacea (Aristeidae: Penaeoidea) as the outgroups. Phylogenetic analysis revealed monophyly of Petalidium comprising three species: Petalidium foliaceum Bate, 1881; Petalidium obesum (Krøyer, 1859); and Petalidium suspiriosum Burkenroad, 1937. Phylogenetic analyses also revealed possible monophyly of the clade including 15 new genera of the former Sergia and Sergestes and the position of Lucifer (family Luciferidae) within the clade Sergestidae. These results highlight necessity of future phylogenetic analyses of the remaining genera Lucifer, Acetes, Peisos, and Sicyonella involving all species of these genera and promise interesting changes for the classification of Sergestoidea. Morphological trends within Sergestoidea are discussed, and an emended diagnosis of Petalidium and diagnoses of the species it includes are given. All species are illustrated and biology of the genus is discussed. Keys to species of Petalidium based upon new information are presented. © 2015 The Linnean Society of London     

Phylogeny and taxonomic revision of all genera of Conopidae (Diptera) based on morphological data

All global genera of the fly family Conopidae are revised here. A cladistic analysis of 117 morphological characters recorded from 154 species, including representatives of 59 genera and subgenera, recovers a phylogenetic hypothesis for the family. This hypothesis is used as the basis of a new classification for the family. Both Sicini and Zodionini are removed from Myopinae and elevated to subfamilial status. A new tribe, Thecophorini, is proposed within Myopinae to accommodate Thecophora, Scatoccemyia, and Pseudoconops. Two genera, Pseudomyopa and Parazodion, are removed from Dalmanniinae and placed in Myopinae and Zodioninae, respectively. Conopinae is divided into 11 tribes, seven of which are newly described (Asiconopini, Caenoconopini, Gyroconopini, Microconopini, Neoconopini, and Siniconopini). Some examined species are transferred to different or new genera and subgenera. A new genus, Schedophysoconops gen. nov. , and subgenus Asiconops (Aegloconops) subgen. nov. within Conopinae are described. A review of character evolution and phylogeography is included in light of the new classification. A catalogue of all genus‐group names is included with new emendations noted.     

A molecular phylogeny of the temperate Gondwanan family Pettalidae (Arachnida,Opiliones, Cyphophthalmi) and the limits of taxonomic sampling

We evaluate the phylogenetic and biogeographical relationships of the members of the family Pettalidae (Opiliones, Cyphophthalmi), a textbook example of an ancient temperate Gondwanan taxon, by means of DNA sequence data from four markers. Taxon sampling is optimized to cover more than 70% of the described species in the family, with 117 ingroup specimens included in the analyses. The data were submitted to diverse analytical treatments, including static and dynamic homology, untrimmed and trimmed alignments, and a variety of optimality criteria including parsimony and maximum‐likelihood (traditional search and Bayesian). All analyses found strong support for the monophyly of the family Pettalidae and of all its genera, with the exception of Speleosiro, which is nested within Purcellia. However, the relationships among genera are poorly resolved, with the exceptions of a first split between the South African genus Parapurcellia and the remaining species, and, less supported, a possible relationship between Chileogovea and the other South African genus Purcellia. The diversification of most genera is Mesozoic, and of the three New Zealand genera, two show evidence of constant diversification through time, contradicting scenarios of total submersion of New Zealand during the Oligocene drowning episode. The genera Karripurcellia from Western Australia and Neopurcellia from the Australian plate of New Zealand show a pattern typical of relicts, with ancient origin, depauperate extant diversity and recent diversification. The following taxonomic actions are taken: Milipurcellia Karaman, 2012 is synonymized with Karripurcellia Giribet, 2003 syn. nov. ; Speleosiro Lawrence, 1931 is synonymised with Purcellia Hansen & Sørensen, 1904 syn. nov . The following new combinations are proposed: Parapurcellia transvaalica (Lawrence, 1963) comb. nov. ; Purcellia argasiformis (Lawrence, 1931) comb. nov .     

An assessment of the diversity of early Miocene Scolopaci (Aves,Charadriiformes) from Saint‐Gérand‐le‐Puy (Allier,France)

Abstract: ‘Totanus’lartetianus, Elorius paludicola and ‘Tringa’gracilis are the three scolopacid birds from the early Miocene of Saint‐Gérand‐le‐Puy described by the French palaeontologist Milne‐Edwards in the 19th century. Since then, no revision of these taxa has been performed. Our re‐examination revealed that not much of the material originally assigned to ‘Totanus’lartetianus can be retained within the species. Presumably plesiomorphic features of the humerus – and potentially the coracoid we attributed to this taxon – indicate that it is misplaced in the extant scolopacid genus and may not even belong to the Scolopacidae (sandpipers and allies), and we therefore place it in the new genus Scolopacimilis. Comparisons of the material assigned to Elorius paludicola and ‘Tringa’gracilis show that they are morphologically similar, both exhibiting distinct scolopacid anatomical features. The latter, however, cannot be referred to the extant taxon Tringa and is classified into the new genus Parvelorius. We further introduce three new species, ?Elorius limosoides sp. nov., and ?Parvelorius calidris sp. nov., which we have tentatively assigned to the extinct scolopacid genera Elorius and Parvelorius, respectively, and Becassius charadriioides gen. et. sp. nov., which, together with Scolopacimilis, display a morphology uncharacteristic for extant Scolopaci. For the first time we have assigned skulls to some of the postcranial elements described in this study. The presence of at least six species of Scolopaci from the early Miocene considerably increases the number of members of the group known from this time.     

Phylogenetic relationships within the South American fish family Anostomidae (Teleostei,Ostariophysi, Characiformes)

Analysis of a morphological dataset containing 152 parsimony‐informative characters yielded the first phylogenetic reconstruction spanning the South American characiform family Anostomidae. The reconstruction included 46 ingroup species representing all anostomid genera and subgenera. Outgroup comparisons included members of the sister group to the Anostomidae (the Chilodontidae) as well as members of the families Curimatidae, Characidae, Citharinidae, Distichodontidae, Hemiodontidae, Parodontidae and Prochilodontidae. The results supported a clade containing Anostomus, Gnathodolus, Pseudanos, Sartor and Synaptolaemus (the subfamily Anostominae sensu Winterbottom) albeit with a somewhat different set of relationships among the species within these genera. Anostomus as previously recognized was found to be paraphyletic and is split herein into two monophyletic components, a restricted Anostomus and the new genus Petulanos gen. nov. , described herein. Laemolyta appeared as sister to the clade containing Anostomus, Gnathodolus, Petulanos, Pseudanos, Sartor and Synaptolaemus. Rhytiodus and Schizodon together formed a well‐supported clade that was, in turn, sister to the clade containing Anostomus, Gnathodolus, Laemolyta, Petulanos, Pseudanos, Sartor and Synaptolaemus. Anostomoides was sister to the clade formed by these nine genera. Leporinus as currently defined was not found to be monophyletic, although certain clades within that genus were supported, including the species with subterminal mouths in the former subgenus Hypomasticus which we recognize herein as a genus. Abramites nested in Leporinus, and Leporellus was found to be the most basal anostomid genus. The presence of cis‐ and trans‐Andean species in Abramites, Leporellus, Leporinus and Schizodon, all relatively basal genera, suggests that much of the diversification of anostomid species pre‐dates the uplift of the Andean Cordilleras circa 11.8 million years ago. Several important morphological shifts in anostomid evolution are illustrated and discussed, including instances of convergence and reversal. © 2008 The Linnean Society of London, Zoological Journal of the Linnean Society, 2008, 154 , 70–210.