The solid state acyl shift of diglycerides: An electron diffraction study

The progress of the solid state acyl shift of 1,2-diglycerides to 1,3-diglycerides is followed at room temperature in single dipalmitin microcrystals by electron diffraction. The β′form, rather than the α-form of the 1,2-isomer, transforms to the 1,3 product. The β′ form packs in the monoclinic paraffin fashion, i.e. the O_⊥ methylene subcell and a chain tilt of 27° about the long subcell axis. After the isomerization, the chain tilt (14° to surface normal) occurs around the $\text{b}{}_{\mathrm{<mtext>S</mtext>}}{}^1$ axis of the resultant T_∥ methylene subcell.     

Thermotropic mesomorphism of cholesteryl myristate. An electron diffraction study

Electron diffraction measurements on heated or cooled microcrystals of cholesteryl myristate, which are grown from solution or epitaxially, on benzoic acid, provide further structural information about its mesomorphic behavior. At subambient temperatures (less than -65 degrees C), a new crystal form is observed which doubles the unit cell axes in the (001) plane. At the major crystalline in equilibrium with smectic endotherm at 70 degrees C, evidence is found for the existence of a pretransition crystal packing. The smectic phase, which coexists with this pretransition crystal form, is composed of relatively well-ordered layers, probably with a monolayer-type packing. Cooling the cholesteric phase to the crystalline form causes a rotational disorder which is not yet understood.     

An infrared-spectroscopic study of reversed micellar solutions of sodium n-octanoate and water in n-decanol

The association process to reversed micelles in the system water/sodium n-octanoate/n-decanol is studied by means of wave number shifts in the fundamental infrared region. It is found that the antisymmetric vibration band (σ₃), and the scissors vibration band (σ₂) of water, together with the antisymmetric stretching vibration band of the ionised carboxylic groups (σ_COO?) are capable of detecting and visualising changes in the micellar association equilibria. The information is primarily qualitative, but some rough quantitative estimations are also made. A comparison between the intensities of the narrow σ₃-line corresponding to unassociated water OH-oscillators discernible at high dilutions in decanol, and the broad σ₃-band of the associated species reveals that the fraction of unassociated OH-groups in water is low, perhaps only a few percent.     

Molecular packing of a crystalline ether-linked phosphatidylcholine: an electron diffraction study

Electron diffraction data from solution- and epitaxially-crystallized samples of 1,2-dihexadecyl-sn-glycerophosphocholine are used in an analysis of its molecular packing in the minimally hydrated crystal form. The molecular chain axes are found to be perpendicular to the bilayer plane and the chains pack in the hexagonal methylene subcell. Translational search of a model based on a known diacyl phosphatidylcholine crystal structure indicates that a crystallographic residual minimum corresponds to a headgroup packing distance similar to values found for the dipalmitoyl analog at low relative humidity. The bilayer packing for the ether-linked phosphatidylcholine is therefore similar to the one reported for a sphingomyelin.     

Polymorphic forms of 1,2-dipalmitoyl-sn-glycerol: a combined X-ray and electron diffraction study

Quantitative crystallographic structure analyses are carried out for two polymorphic forms of 1,2-dipalmitoyl-sn-glycerol. A single crystal X-ray determination on the higher melting beta'L-form reveals that the hairpin conformer structure is essentially identical to that of the dilauroyl homolog reported earlier (I. Pascher, S. Sundell and H. Hauser (1981) J. Mol. Biol. 153, 791-806) with inclined acyl chain packing in the O perpendicular methylene subcell. Lamellar electron diffraction intensity data from epitaxially crystallized samples were used to determine the structure of the lower melting alpha L-form. The chains pack in the hexagonal subcell and are perpendicular to the lamellar surface. An appropriately oriented molecular model based on the beta'L-polymorph does not lead to a satisfactory structure solution but models based on the conformationally different 1,2-diglyceride moiety of several phospholipid structures does lead to a closer match to the observed diffraction data. In this proposed packing model for the alpha L-form, the hydroxyl oxygens are somewhat farther away from the unit cell origin than in the beta'L-form crystal structure, and, in combination with the different molecular conformation, this might explain the observed stability of this crystal polymorph against acyl shifts.     

An X-Ray diffraction study of poly-L-ornithine hydrobromide

An X-ray study has been made of the synthetic polypeptide poly-L -ornithine hydrobromide to investigate whether, like the chemically related polypeptides poly-L -lysine and poly-L -arginine hydrochlorides, it can undergo conformational changes merely from variations in its degree of hydration. X-ray powder and fiber photographs of specimens with from half up to about three molecules of water per ornithine residue show features that suggest a “cross-β-pleated-sheet” structure. Each pleated sheet is formed from parallel chains and the sheets are piled up along the b axis. The spacings, which do not vary appreciably with hydration, can be satisfactorily indexed in terms of an orthogonal unit cell with a = 4.60 Å, b = 30.2 Å, and c = 6.64 Å. These dimensions are shown by models to be compatible with the proposed structure. Removal of the last half molecule of water results in a very diffuse pattern but on rehydration the sharp pattern reappears. Specimens containing four to nine molecules of water per residue show a quite different pattern. Reflections other than equatorial are absent in oriented diagrams except for a 5.4 Å diffuse streak across the meridian which is suggestive of an α-helical structure. Increasing the relative humidity from 86% to about 100% causes the a axis of the hexagonal unit cell to increase from 14.7 Å to 15.3 Å. On drying, the β structure reappears once again. These conformational changes are very similar to those observed in poly-L -lysine hydrochloride except that the latter shows a more stable α-helical form. This difference may be explained in terms of stabilizing hydrophobic interactions between side chains, since ornithine has a shorter side chain than lysine.     

An X-ray diffraction study of poly-L-arginine hydrochloride

An x-ray study has been made of polyarginine hydrochloride to investigate whether, like polylysine hydrochloride, it can undergo conformational changes merely from variations in the degree of hydration. X-ray powder and fiber photographs of specimens containing up to about five molecules of water per arginine residue show features characteristic of α-helical structures including a 5.4-Å layer line and a meridional 1.5-Å reflection. Increasing the water content from ¹/₂ to 6¹/₂ molecules per residue causes the a axis of the hexagonal unit cell to increase from 14.4 Å to 15.8 Å, with no appreciable change in the 27.0 Å c axis. Removal of the last half molecule of water results in a very diffuse α pattern, but on rehydration the sharp pattern reappears. Specimens containing five to twenty water molecules per residue show quite a different pattern, the spacing of which do not vary appreciably with hydration. This pattern includes a meridional 3.4-Å reflection, a feature commonly shown by β structures, and indeed all the reflections can be satisfactorily indexed in terms of a monoclinic unit cell with a = 9.26 Å, b = 22.05 Å, c = 6.76 Å, and γ = 108.9°. These dimensions are shown by models to be compatible with a β pleated-sheet structure.     

An X-ray diffraction study of poly-L-homoarginine hydrochloride.

An X-ray study of the synthetic polypeptide poly(L -homoarginine hydrochloride) has been made to investigate whether, like the chemically related polypeptides poly(L -lysine hydrochloride), poly(L -arginine hydrochloride), and poly(L -ornithine hydrobromide), it can undergo conformational transitions merely from variations in its degree of hydration. X-ray photographs of powder and oriented specimens containing one to 15 molecules of water per L -homoarginine hydrochloride residue showed that this polymer forms only a β-pleated-sheet structure. The pleated sheets, formed by antiparallel polypeptide chains hydrogen-bonded to each other, are piled up along the b axis in an alternating sequence (“sandwich structure”). This structure did not appreciably change with variations of the degree of hydration, and the observed reflections at 56% relative humidity (1.8 molecules of water per residue) could be indexed satisfactorily in terms of a monoclinic unit cell, of space group P2₁, with a = 9.34 Å, b = 40.07 Å, c = 6.94 Å, and γ = 106°. These dimensions are shown by models to be compatible with the proposed structure, and the calculated density of 1.27 g/cm³ agrees well with the experimental value of 1.29 g/cm³. Removal of the last molecule of water results in a very diffuse pattern, while specimens containing 20 molecules of water per residue show only reflections due to water.     

Spectroscopic characterisation of n-octanohydroxamic acid and potassium hydrogen n-octanohydroxamate

The crystal structure and spectroscopic characteristics of n-octanohydroxamic acid and the potassium compound of that acid have been investigated by XRD, XPS, FTIR and Raman spectroscopy. XRD revealed that the acid is in the keto Z conformation with the alkyl chains oriented along the z-direction and hydrogen bonding between hydroxamate moieties. Vibrational spectra confirm this conclusion. Chemical analysis, XRD and XPS established that the potassium compound is the acid salt KH(C₇H₉CONO)₂. The crystal structure showed that the hydroxamate groups are also in the keto Z conformation and this is supported by vibrational spectra. In the acid salt, the two hydroxamate moieties are connected by a symmetrical O-H-O short hydrogen bonded linkage between the two hydroxamate oxygen atoms and this explains the absence of a discernible O-H stretch band in the vibrational spectra. Identification of the vibrational bands displayed is supported by deuteration and ¹⁵N substitution.     

An X-ray diffraction and electron microscopy study of the extraction of erythrocyte membranes with the bile salt, cholate

Studies by X-ray diffraction and electron microscopy of slowly frozen samples of control and cholate-extracted preparations of erythrocyte membranes have demonstrated changes in structural parameters which can readily be related to the extraction of cytoskeletal proteins. In the frozen state, these components appear to be condensed to about 10% of the total membrane thickness. The observations illustrate some of the advantages and limitations in the use of slowly frozen membrane preparations in studies of membrane structure.     

An X-ray diffraction study of model membrane raft structures

Protein sorting and assembly in membrane biogenesis and function involves the creation of ordered domains of lipids known as membrane rafts. The rafts are comprised of all the major classes of lipids, including glycerophospholipids, sphingolipids and sterol. Cholesterol is known to interact with sphingomyelin to form a liquid-ordered bilayer phase. Domains formed by sphingomyelin and cholesterol, however, represent relatively small proportions of the lipids found in membrane rafts and the properties of other raft lipids are not well characterized. We examined the structure of lipid bilayers comprised of aqueous dispersions of ternary mixtures of phosphatidylcholines and sphingomyelins from tissue extracts and cholesterol using synchrotron X-ray powder diffraction methods. Analysis of the Bragg reflections using peak-fitting methods enables the distinction of three coexisting bilayer structures: (a) a quasicrystalline structure comprised of equimolar proportions of phosphatidylcholine and sphingomyelin, (b) a liquid-ordered bilayer of phospholipid and cholesterol, and (c) fluid phospholipid bilayers. The structures have been assigned on the basis of lamellar repeat spacings, relative scattering intensities and bilayer thickness of binary and ternary lipid mixtures of varying composition subjected to thermal scans between 20 and 50 °C. The results suggest that the order created by the quasicrystalline phase may provide an appropriate scaffold for the organization and assembly of raft proteins on both sides of the membrane. Co-existing liquid-ordered structures comprised of phospholipid and cholesterol provides an additional membrane environment for assembly of different raft proteins.     

An electron microscope study of lampbrush chromosomes

Lampbrush chromosomes were isolated from germinal vesicles of oocytes from Necturus maculatus, Triturus viridescens, Pseudotriton montanus and Rana pipiens. After treatment of isolated nuclei with 10 per cent sucrose, chromosomes free of nuclear sap are obtained for examination in either the light microscope or in the electron microscope. For electron microscopy the chromosomes were prepared either by Anderson's critical-point procedure or were embedded in methacrylate and sectioned. The evidence presented in favor of the view that the loops, axis, and the chromomeres of lampbrush chromosomes are formed by two chromonemata is based on the following observations: 1. Treatment of isolated chromosomes with 0.002 M KCN loosens the structure of the loops, and a more or less coiled organization is then observed in most of them with the light microscope. At the electron microscope level, each loop consists of a bundle of microfibrils. The latter are 500 A in diameter, and their complex arrangement within the loops is best studied in stereoscopic preparations. 2. Treatment of chromosomes with 0.002 M KCN also unravels the "chromomeric" regions of the axis. A fibrillar organization then becomes visible in the light microscope. In the electron microscope, wide strands are seen within some chromomeres; their diameter corresponds closely to that of the chromonemata forming the loops associated with the same chromomeres. In thin transverse sections of isolated chromosomes, no special structure is visible in the axial region except random profiles of fibrils similar to those seen in the loops of the same preparations. 3. Two strands sometimes connect adjacent chromomeres. Where gaps exist along the axis, after stretching of the chromosomes, a loop occasionally straddles the break and returns to a chromomere on each side.