Characterization of polymorphic microsatellites in the Pacific sardine Sardinops sagax sagax (Clupeidae)

We isolated 11 microsatellites from the Pacific sardine Sardinops sagax sagax. The number of alleles and H_E among 30 individuals from a single population ranged from four to 24 and from 0.606 to 0.959, respectively. Pacific sardines are a vital economic resource in the northeastern Pacific Ocean, but insufficiently polymorphic loci have limited inferences about its stock structure and genetic variation. The level of variability of these new markers will prove useful in testing hypotheses on the stock‐structure and long‐term genetic integrity of the species.     

Comparing body and otolith shape for stock discrimination of Pacific sardine,Sardinops sagax Jenyns, 1842

Stock discrimination in fishes is important for fisheries management. Morphometric analysis has been a viable approach when different structures (overall body, otoliths, and scales) are used. However, in cases where a single source of information may already differentiate among stocks, different conclusions may be obtained when using different sources of information. These have to be considered because they could lead to different management plans. Using geometric morphometrics, data was analyzed regarding the body and otolith shape of the Pacific sardine Sardinops sagax Jenyns, 1842 collected off the west coast of Baja California Peninsula, Mexico. Results confirm seasonal differences in body shape and otolith shape in stocks previously associated with sea surface temperature. Although both measures resulted in compatible conclusions, the shape of the body discriminated groups more appropriately; the data indicate that differential resolution could be thus obtained, depending on the source of the data. If possible, the application of more than one source of information is suggested in comparable cases because this would detect the extent of stock isolation with greater certainty.     

Thermal behavior of the Pacific sardine (Sardinops sagax) acclimated to different thermal cycles

The study of thermal behavior of fishes provides useful data to enable predictions of the effect of climatic change on populations so as to ensure good management of fisheries. The Pacific sardine has a complex population dynamics; three subpopulation have been proposed (cold, temperate and warm).We exposed Sardinops sagax caeruleus (temperate sub-population) to two different thermal cycles, which were chosen to be consistent with the temperatures reported in two distant places Cedros Island (CIc: 18–23 °C) and San Pedro (SPc: 13–18 °C).The thermal behavior of the SPc and CIc sardines was affected by acclimation treatment: the interval of thermal preference was 17.1–19.9 and 16.0–18.8 °C, while the lethal temperatures interval (LT50) was 7.7–25.6 and 6.9–24.3 °C, and the critical limits CTMax and CTMin were 7.1–32.2 and 5.5–30.4 °C, respectively.The results of thermal behavior showed that sardines of the temperate subpopulation are more tolerant to cold; this might suggest that they would be more able to survive in California and Oregon than in Baja California Sur and the Gulf of California.     

Living with uncertainty: genetic imprints of climate shifts in East Pacific anchovy (Engraulis mordax) and sardine (Sardinops sagax)

In the upwelling zone of the northeastern Pacific, cold nutrient-rich conditions alternate with warm nutrient-poor intervals on timescales ranging from months to millennia. In this setting, the abundances of Pacific sardine (Sardinops sagax) and northern anchovy (Engraulis mordax) fluctuate by several orders of magnitude, with sardine dominating during warm conditions and anchovy dominating during cool conditions. Two population models can explain the response of these fishes to adverse conditions. Under the basin model, species distributions contract to a central (optimal) range during population crashes. Expectations of this model may include a single range-wide population with a decline in genetic diversity on both sides of a central refuge. In contrast, the self-recruitment model invokes a series of local oceanographic domains that maintain semi-isolated subpopulations. During adverse conditions, some subpopulations cannot complete the life cycle within the local environment and are extirpated. Expectations of this model include some degree of population genetic structure and no clear gradient in genetic diversity. We examined mitochondrial DNA cytochrome b sequences to assess these competing models for anchovy (N = 196; 539 bp) and sardine (N = 107; 425 bp). The mitochondrial DNA gene genealogies are shallow but diverse for both species. Haplotype frequencies are homogeneous among subpopulations, but genetic diversities peak for both species along Baja California and adjacent southern California. Mismatch distributions and Tajima's D-values reveal distinctive signatures of population bottlenecks and expansions. Sardine haplotypes coalesce at approximately 241,000 years bp, with an initial female effective population size Nf0 = 0 followed by exponential growth to Nf1 = 115 million. Anchovy haplotypes coalesce at approximately 282,000 years bp, with an initial population size of Nf0 = 14,000, followed by exponential growth to Nf1 = 2.3 million. These results indicate a founder event for sardine and a severe population decline for anchovy in the California Current during the late Pleistocene. Overall, these data support the basin model on decadal timescales, although local recruitment may dominate on shorter timescales.     

Integrating fish and parasite data as a holistic solution for identifying the elusive stock structure of Pacific sardines (Sardinops sagax)

There is an urgent need to clarify how different stocks, or subpopulations of fish species, are vulnerable to fishing pressure and unfavorable ocean conditions because of the increasing demand on fisheries for human consumption. For marine fishes, the potential for high gene flow increases the difficulty in determining the number of subpopulations managed in a specific fishery. Although the use of molecular data has become a common method in the past 15 years to identify fish subpopulations, no single technique or suite of techniques has been established for fish stock structure studies. We review the use of fish morphometrics, artificial tags, fish genetics, parasite genetics, and parasites as biological tags to identify subpopulations of marine fishes with a focus on the Pacific sardine (Sardinops sagax) fishery off the west coast of North America. We suggest an integration of fish- and parasite-based techniques for future stock structure studies, particularly for pelagic fish species whose stock structure can be elusive. An integration of techniques may also resolve fish stock structure over small geographic areas by increasing the number of spatial and temporal scales studied simultaneously leading to methods for successful management of marine fish species.     

Changes in ovarian development and plasma levels of sex steroid hormones in the wild female Japanese sardine (Sardinops melanostictus) during the spawning period

In order to clarify the spawning pattern of Japaneses sardine ( Sardinops melanostictus ) during the spawning period, changes in ovarian histology, frequency distributions of oocyte diameter and plasma levels of oestradiol-17β (E₂) and 17 a ,20β-dihydroxy-4-pregnen-3-one (17 a ,20β-diOH-P) were examined in female fish captured in the region off Kyushu and Shikoku in Japan. With the development of the ovary, the gonadosomatic index (GSI) increased gradually and the size of oocytes became larger. When the GSI exceeded 13, the translucent hydrated eggs began to dominate and ovulation subsequently occurred. After ovulation, GSI decreased to less than 3. Post-ovulatory follicles were found only in the lower GSI ranges and atretic oocytes were always observed in the ovary. Plasma E₂ levels increased along with ovarian development but decreased after completion of yolk accumulation. On the other hand, 17 a ,20β-diOH-P showed the highest level just before and after ovulation. Ovarian histology and hormonal profiles suggest that the sardine spawns repeatedly during the spawning period. Based on the concentration of 17a,20β-diOH-P, the female Japanese sardine was estimated to ovulate before the middle of the night.     

The littoral fish assemblage of the Desventuradas Islands (Chile) has zoogeographical affinities with the Western Pacific

A systematic account of fish species inhabiting waters surrounding the Desventuradas Islands, off Chile, is presented. The 61 species recognized belong to 33 families of Osteichthyes, and one of Chondrichthyes (Squalidae). It was found that the icthyofaunal links were stronger to the Western Pacific (90.7%) than to the Eastern Pacific (6.9%), despite the fact that these islands are much closer to the South American coast than to the coasts of Oceania. Hydrographic and physical barriers are postulated as explaining this pattern.     

Asterropteryx atripes, a new gobiid fish from the Western Pacific Ocean (Perciformes: Gobioidei)

 A new gobiid fish, Asterropteryx atripes, is described on the basis of eight specimens from Iriomote-jima Island, Ryukyu Islands, and El Nido, Philippines. It differs from its congeners by having the following combination of characters: 3rd spine of first dorsal fin long, filamentous, distal tip usually over end of 2nd dorsal fin base when appressed in both sexes; pelvic fins almost separated, innermost (=5th) segmented rays connected by rudimentary low membrane between bases, and no frenum; 4–7 short spines on posterior margin of preopercle (the uppermost spine usually just behind the cephalic sensory canal pore N); eye large, 32.3–35.8% of head length; enlarged haemal arches on 1st two caudal vertebrae; a distinct black band from posterior margin of eye to caudal fin base (indistinct in dark-phase individuals); black pelvic fin (vivid in dark-phase individuals); numerous minute bright blue spots on head and body in life; no distinct dark spots on head and body; iris entirely reddish-brown or dusky (bright white ventrally in pale-phase individuals) when alive or fresh, and entirely black in preservation, without white transverse bar on middorsal surface; hovering habit. The new species appears to be most closely related with the other only known hovering species, A. striata; the latter is readily distinguished from the former in having no long, filamentous dorsal spine; semitranslucent pelvic fin; and a series of small black spots along dorsal fin base and dorsal edge of caudal peduncle. Asterropteryx contains two distinct groups, and the monophyly of the genus is open to question. Received: March 19, 2000 / Revised: February 25, 2002 / Accepted: April 25, 2002     

Sequence and localization of an ultraviolet (sws1) opsin in the retina of the Japanese sardine Sardinops melanostictus (Teleostei: Clupeiformes)

A full‐length complementary (c)DNA encoding ultraviolet (UV)‐sensitive opsin (sws1) was isolated from the retina of the Japanese sardine Sardinops melanostictus. The sws1 phylogenetic tree showed a sister group relationship with the Cypriniformes, following the ray‐finned fish phylogeny. By expressing reconstituted opsin in vitro, it was determined that the maximum absorbance spectrum (λ_max) of sws1 is around 382 nm, being intermediate in position between two subtypes of sws1 pigment that are UV sensitive (λ_max = 355–380 nm) and violet sensitive (λ_max = 388–455 nm), which have been reported to date. The ocular media transmitted >20% transmittance of light in the range of 360–600 nm. In situ hybridization analyses revealed that sws1 messenger (m)RNA is localized in a central single cone surrounded by four double cones in a square mosaic. The square mosaic occupies the ventro‐temporal quadrant of the retina and the in situ hybridization signals were dominant in this area suggesting that the fish may use UV vision when looking upward. Based on these results, considerable significances of potential UV sensitivity, in relation to characteristic habits of S. melanostictus, are discussed.     

The Hawaiian Archipelago is a stepping stone for dispersal in the Pacific: an example from the plant genus Melicope (Rutaceae)

Aim Pacific biogeographical patterns in the widespread plant genus Melicope J.R. Forst. & G. Forst. (Rutaceae) were examined by generating phylogenetic hypotheses based on chloroplast and nuclear ribosomal sequence data. The aims of the study were to identify the number of colonization events of Melicope to the Hawaiian Islands and to reveal the relationship of Hawaiian Melicope to the Hawaiian endemic genus Platydesma H. Mann. The ultimate goal was to determine if the Hawaiian Islands served as a source area for the colonization of Polynesia. Location Nineteen accessions were sampled in this study, namely eight Melicope species from the Hawaiian Islands, four from the Marquesas Islands, one species each from Tahiti, Australia and Lord Howe Island, two Australian outgroups and two species of the Hawaiian endemic genus Platydesma. To place our results in a broader context, 19 sequences obtained from GenBank were included in an additional analysis, including samples from Australia, Papua New Guinea, New Zealand, Southeast Polynesia and Asia. Methods DNA sequences were generated across 19 accessions for one nuclear ribosomal and three chloroplast gene regions. Maximum parsimony analyses were conducted on separate and combined data sets, and a maximum likelihood analysis was conducted on the combined nuclear ribosomal and chloroplast data set. A broader nuclear ribosomal maximum parsimony analysis using sequences obtained from GenBank was also performed. Geographic areas were mapped onto the combined chloroplast and nuclear ribosomal tree, as well as onto the broader tree, using the parsimony criterion to determine the dispersal patterns. Results Phylogenetic analyses revealed that Platydesma is nested within Melicope and is sister to the Hawaiian members of Melicope. The Hawaiian Melicope + Platydesma lineage was a result of a single colonization event, probably from the Austral region. Finally, Marquesan Melicope descended from at least one, and possibly two, colonization events from the Hawaiian Islands. Main conclusions These data demonstrate a shifting paradigm of Pacific oceanic island biogeography, in which the patterns of long‐distance dispersal and colonization in the Pacific are more dynamic than previously thought, and suggest that the Hawaiian Islands may act as a stepping stone for dispersal throughout the Pacific.     

Review of the Capitellidae (Annelida, Polychaeta) from the Eastern Tropical Pacific region, with notes on selected species

The main objective of this work is to contribute to the taxonomic knowledge of the species of Capitellidae reported for the Eastern Tropical Pacific. This catalogue includes the original name of each species, new names, synonymies, type localities, the museum or institution where the type material is deposited, revision of the material reported for the region by different authors, new examined material, previous reports from other regions of the world, and comments on systematics and distributions. The catalogue lists 43 species in 19 genera. Of these, 6 species were erroneously recorded for the region (Decamastus gracilis Hartman, 1963; Decamastus nudus Thomassin, 1970; Mastobranchus variabilis Edwing, 1984; Notomastus aberans Day, 1957; Notomastus americanus Day, 1973; Notomastus latericeus Sars, 1851) and 5 species are found here to be questionable records for the Eastern Tropical Pacific (Capitella capitata (Fabricius, 1780); Dasybranchus glabrus Moore, 1909; Decamastus lumbricoides Grube, 1878; Notomastus lineatus Claparède, 1870 and Notomastus tenuis Moore, 1909).     

Reporting vegetation condition using the Vegetation Assets, States and Transitions (VAST) framework

Summary   The Vegetation Assets, States and Transitions (VAST) framework classifies vegetation by degree of human modification as a series of states, from intact native vegetation through to total removal. VAST is a simple communication and reporting tool designed to assist in describing and accounting for human-induced modification of vegetation. A benchmark is identified for each vegetation association based on structure, composition and current regenerative capacity. Benchmarks are based on the best understanding of pre-European conditions (sometimes called 'fully natural'). Relative change in condition from this benchmark is assessed for each site or patch. Three case studies demonstrate use of the diagnostic criteria that underpin VAST. We argue that VAST has potential to provide a consistent framework for monitoring and reporting vegetation modification at a range of scales. Uses of VAST datasets for natural resource planning and management are discussed including a reporting and communication framework for describing the response of vegetation to changes in land use and land management practices, measuring progress toward vegetation targets and describing and mapping vegetation changes and trends.     

Effect of starvation on the nutritional condition of early zoea larvae of the red squat lobster Pleuroncodes monodon (Decapoda,Munididae)

Abstract

One of the key factors affecting larval survival is food availability. This study investigated the influence of starvation on the nutritional condition of zoea I larvae of Pleuroncodes monodon. Experimental treatments with differential periods of starvation and subsequent feeding (point of no return: PNR) in addition to treatments with differential periods of feeding and subsequent starvation (point of reserve saturation: PRS) were used to quantify larval survival and the occurrence of lipid droplets in the hepatopancreas. Larval survival differed significantly depending on the starvation and feeding treatment administered. A high percentage of survival was found for the starvation treatment until day 1 (S1-PNR), for the feeding treatment until day 4 (F4-PRS), and for the continuously fed control groups (FC). Survival was minimal for the starvation treatment lasting until day 7 (S7-PNR) and for the continuously starved control groups (SC). In turn, similar tendencies were observed in the utilization of energy reserves; the lipid droplets significantly decreased throughout the PNR treatment, while the presence of lipid droplets gradually increased during the PRS treatment. All these larval condition parameters can be used in fishery models of population dynamics, which estimate the nutritional status of the offspring and their effects on survival.     

蛋白质内含子介导的蛋白纯化系统在变性条件下的应用

由蛋白质内含子介导的亲和蛋白质纯化系统(IMPACT)已得到广泛应用,通过其纯化得到的目的蛋白不含蛋白纯化标签以及多余的氨基酸残基,且操作简单成本低廉。这些优点使得其相对于其他蛋白纯化系统有着无与伦比的优势。但是现有报道都局限于非变性条件下使用,这往往会限制其在一些包涵体蛋白变性条件下使用。以一已知表达形成包涵体形式的丝素蛋白为例,研究IMPACT系统在时变性条件下使用变性剂浓度、温度和诱导断裂还原剂浓度。实验表明,在4 M尿素,100 mM DTT室温作用下蛋白质内含子会获得最大断裂效率(80%)。柱上在线断裂实验表明,其最终蛋白得率超过65%。     

Early development of the Neotropical fish known as long sardine Triportheus auritus (Valenciennes 1850) (Characiformes,Triportheidae)

Larvae and juveniles of long sardine, Triportheus auritus, from the lower Amazon river was described, evaluating ontogenetic changes in their external mor­phology, pigmentation, fin development, morphometry, and meristics. A total of 93 individuals, 83 larvae and 10 juveniles were analyzed, they were captured monthly between 2014 and 2019 in the Amazon river channel and in macrophytes aquatic stands in the alluvial plains located in the lower Amazon River. From each specimen, morphometric and meristic data were measured and then the growth pattern between morphometric variables was analyzed. The larvae have an elongated body in a fusiform shape, superior mouth, simple nostril, pigmented spherical eyes and long intestine, surpassing the median region of the body. Initial pigmentation is scarce, but intensifies through development forming a pattern composed of three longitudinal bands concentrated in the ventral, cephalo-dorsal and lateral line regions. There are also pigments in the mandible, surrounding the mouth, under the swim bladder, intestine and fins. The sequence of complete fin formation is: caudal, anal, dorsal, pectoral and pelvic. The total number of myomeres ranged from 45 to 48 (25–29 preanal and 17–22 postanal). Morphometric relationships indicated differential growth for measurable morphometric parameters, with abrupt growth of snout length, head length and body height in the transition from flexion to postflexion stages. The pre-dorsal distance showed a decrease in the growth rate at the threshold from the larval to the juvenile period. The pre-pectoral and pre-anal distances showed negative allometric growth. In conclusion, the combination of body shape pigmentation pattern and, the formation sequence of fins allow the identification of the genus and coupled with the number of myomeres, morphometric relationships, and ray numbers of the anal fin ensure the differentiation of T. auritus from the other congeneric species. The metamorphosis occurred mainly at the end of the larval period and it is related to changes in the physiological and ecomorphological characteristics of the species.     

Form and functional morphology of Raetellops pulchella (Bivalvia: Mactridae): an example of convergent evolution with anomalodesmatans

Abstract. The bivalve Raetellops pulchella is a highly specialized, deposit-feeding member of the Mactridae. Studies of its form and function provide an example of how the bivalve body plan can be modified to facilitate the exploitation of mud as a food resource, and help in understanding how this lifestyle has evolved. Adaptations to this lifestyle include an overall reduction in ctenidial size and loss of the descending lamellae of both outer demibranchs. This reduction is associated with the enlargement of the labial palps to process inhaled sediment. In the mantle cavity, a waste canal below the posterior mantle flaps facilitates pseudofeces removal. The midgut is long and capacious, presumably to cope with the large amounts of ingested organic material. In addition, individuals of R. pulchella have unusually thin, brittle, and rostrate shells, with narrow siphonal gapes. They possess a shell buttress in each valve extending from the hinge plate to above the posterior adductor muscle. This buttress functions to prevent the brittle shell valves from fracturing when adduction occurs. A buttress is also seen in some representatives of the Anomalodesmata; in particular, the situation in R. pulchella is most like that seen in individuals of the similarly deposit-feeding species Offadesma angasi (Anomalodesmata: Periplomatidae). I interpret the similar shell form of these deposit-feeding clams as an example of convergent evolution.     

Comparative morphology of the feeding basket of five species of Euphausia (Crustacea,Euphausiacea) in the western North Pacific,with some ecological considerations

The feeding basket morphology and stomach content analyses of five Euphausia species (E. recurva, E. nana, E. pacifica, E. mutica and E. similis) were compared to elucidate their feeding ecology. The filter areas of feeding basket of E. pacifica and E. nana were proportionally larger than those of others in the size classes 13-20 mm and <13 mm, respectively, suggesting a high filtering efficiency in these species at each size class. Based on the secondary setal distance, it is suggested that there are three types of feeding basket in five Euphausia species. One is the fine mesh (<5 μm) of E. pacifica and E. nana; a second is the medium (10-20 μm) of E. recurva and E. mutica; and the third is the coarse (20-30 μm) of E. similis. The ability to feed on particles <5 μm would give both species, E. pacifica and E. nana, a great advantage over other species when number of flagellates is high. Stomach content analyses indicated a more omnivorous feeding mode in E. mutica, E. recurva and E. similis and a more herbivorous in E. pacifica and E. nana. This is in agreement with morphological studies of feeding baskets. Increments in the primary and secondary setal distances with increasing size of four Euphausia species, except E. pacifica, were evident, reflecting interspecific differences in food particle sizes utilized. In E. pacifica, however, the morphological similarity should produce intraspecific competition in diet. This revised version was published online in September 2006 with corrections to the Cover Date.