Annual nitrophilous pond and river bank communities in north part of Korean peninsula

The article deals with the herbal vegetation of flow and basin watersides in North Korea. Characterizations of associationsPolygonetum thunbergii Lohm. etMiyawaki 1962 andPolygonetum sieboldii-hydropiperis Okuda 1978 are given.Persicarietum posumbu, Aeschynomeno-Kummerowietum, Bidens bipinnata-community,Hemarthria sibirica-community,Persicaria dissitiflora-community andBidens tripartita-community are newly described. All phytosociological relevés were numerically classified by the computer program NUMCLAS. Brief notes on development, ecology and classification of waterside vegetation are mentioned.     

Salinity-dominated change in community structure and ecological function of Archaea from the lower Pearl River to coastal South China Sea

Archaea have multiple roles in global biogeochemical cycles. However, we still have limited knowledge about how environmental factors affect the diversity and function of different archaeal lineages. The goal of this study was to examine the change in the abundance and community structure of Archaea in the sediments collected from the lower Pearl River (mainly North River tributary), its estuary, and coastal South China Sea (SCS) in order to evaluate how archaeal ecological function might change along the salinity gradient. Pyrosequencing of the 16S rDNA gene of Archaea was performed on sediment samples from Feilaixia Dam on the North River tributary to Wanshan islands, which have a salinity range of 0.1 to 31.2?‰. Consistent with the salt tolerance of cultivated representatives, methanogens in the genera Methanoregula, Methanosaeta, and Methanosarcina and Nitrososphaera within Thaumarchaeota of the ammonia-oxidizing Archaea (AOA) were abundant in freshwater sediments of the North River tributary, whereas the marine-associated genera Methanococcoides and Nitrosopumilus were the most abundant methanogens and AOA, respectively, in the estuary and coastal SCS. However, the percentages of total methanogens decreased and Thaumarchaeota increased with salinity, respectively. The phylum Crenarchaeota was largely represented by class-level lineages with no cultivated representatives, which collectively were more abundant in the estuary and coastal SCS in comparison to freshwater sites. This study indicates that salinity is the dominating factor affecting archaeal community structure and ecological function from the North River tributary of the Pearl River, its estuary, and coastal SCS, which is consistent with salinity control on microbial diversity in other regions of the world.     

The forest-cerrado transition zone in southern Amazonia: Results of the 1985 Projeto Flora Amazônica expedition to Mato Grosso

An account of the history of collecting in the Mato Grosso is followed by a discussion of the current views on the nature of the vegetation along the transition from Amazonian forest to cerrado. The purpose of the 1985 Projeto Flora Amazônica expedition was to sample the vegetation in the transition region in northern Mato Grosso. In order to characterize the vegetation at the various localities, the identified collections were assigned to one of five broad distributional categories: Planaltine, Transitional, Amazonian, Wide-spread, or Other. In most cases, as expected, the collecting sites in the north and the west were characterized by Amazonian forest species while those in the south and east comprised mainly cerrado elements. Our collections show that the transition zone is a complex mosaic of Amazonian forest and cerrado formations.     

Plant communities of the Accra Plains,Ghana

A new classification, using the Zürich-Montpellier procedures, is presented for the grassland, thicket and forest vegetation of the Accra Plains, Ghana. Newly described syntaxa comprise 1 class (Vetiverietea), 4 orders, 9 alliances, 16 associations and 16 subassociations. Altogether 350 species of vascular plants were recorded in 140 relevés. Correlations are made between syntaxa and climatic, edaphic and anthropogenic factors. The floristic distinctness of the area is assessed: 4 endemic species and about 40 widely disjunct species occur. Although the majority of species are of Guinean affinity, the plant communities of the Accra Plains are unique in the context of African tropical vegetation.     

Myriophyllum quitense (Haloragaceae) in the United States

A systematic study of more than 15,000Myriophyllum specimens from 189 North American herbaria yielded 63M. quitense specimens. Late 19th century collections were made from Henry's Fork of the Snake River in Jefferson County, Idaho, in 1872, from Santa Cruz Creek, Tucson, Pima County, Arizona, in 1881, from Yellowstone Lake in 1885, and from Crook County, Oregon, in 1894. Twentieth century collections have been made from Yellowstone National Park, at several sites along the Snake River in Idaho, in Summit County, Utah, in Lassen and Shasta counties of northern California, at numerous sites along the Deschutes River, and in Benton County, Oregon, and at three sites in Washington. We contend that the species was introduced into North America by migratory waterfowl more than 100 years ago. Only in the Yellowstone Lake and numerous Deschutes River habitats in which populations now exist are environmental conditions conducive to full morphological development of the species in North America.     

Prevalence of tick-borne encephalitis virus (TBEV) RNA in Dermacentor reticulatus ticks from natural and urban environment,Poland

Tick-borne encephalitis virus (TBEV) (Flaviviridae, Flavivirus) is an arthropod-borne virus, an etiologic agent of tick-borne encephalitis (TBE), a human infection involving the central nervous system. The disease is endemic in a large region in Eurasia, where it is transmitted mainly by Ixodes ricinus and Ixodes persulcatus ticks. It is known that also Dermacentor reticulatus is involved in circulation of TBEV. However, the current knowledge of D. reticulatus importance in TBE epidemiology is still insufficient. A total of 471 adult D. reticulatus ticks were collected by flagging vegetation in the Bia?owie?a Primeval Forest, Biebrza National Park, Masurian Landscape Park (North-Eastern Poland) and in the city of Warsaw in the years 2007–2010. All collected ticks were examined individually for the presence of RNA of TBEV using nested RT-PCR assay. Positive results were noted in all investigated localities with the infection rate ranging from 0.99 to 12.5 % with a total mean of 2.12 %. The difference in the percentage of infective males and females was not statistically significant.     

Experience with the diagnostics and purification of plum pox virus

Some diagnostic methods devised for the demonstration of the presence of plum pox virus in plum (Prunus domestica L.) and apricot (Armeniaca vulgaris Lam.) leaves were examined. The method of radial diffusion in agar can be recommended as the simplest and the least time consuming method which can be used during the entire vegetation period. In order to obtain antisera, some preparation methods of PPV antigen were verified. The best preparation method was a modification of Van Oosten’s method in which HEPES buffer pH 6.7 was used for the homogenization-of leaves from infectedNicotiana clevelandii Gray plants and for the solution of sediments after ultracentrifugation. In this way, antigens with titre up to 1: 2048 and during the immunization of rabbit antisera with titre 1: 512 to 1: 1024 were obtained. After the saturation of antisera according to Uyemoto, the titre of the antisera was 1: 64 to 1: 256. Antisera were used for agar preparation in transparent plastic boxes. 0.2 to 1 g portions of leaf material were homogenized with 0.05 M Tris-HCl buffer pH 7.2, 3% pyrrolidine and 1 % polyvinylpyrrolidone in the ratio of 1: 3 for the determination of PPV in plum and apricot leaves.     

Chemical structure of the cell wall-associated polysaccharide of Bifidobacterium animalis subsp. lactis LKM512

We have demonstrated that Bifidobacterium animalis subsp. lactis LKM512 had some probiotic properties in vivo and in vitro. To further understand their mechanisms, the chemical structure of the extracellular polysaccharide that constructs the cell envelope was determined. The strain was anaerobically cultured in MRS broth at 37 °C for 20 h, then the bacterial cells were harvested by centrifugation and washed. The cell wall-associated polysaccharide (CPS) was prepared from the cell wall component digested by lysozyme. The results of anion exchange and gel filtration chromatography showed that the polysaccharide was negatively charged and had a high molecular mass. The CPS was found to compose of galactopyranosyl, galactofuranosyl, glucopyranosyl and rhamnopyranosyl residues in the molar ratio of 1:1:1:3 by using methylation analysis with GC-MS and HPLC profiling. From the results of the structural characterization by 1 dimensional and 2 dimensional NMR spectroscopy, the polysaccharide was established to be a hexasaccharide repeating unit with the following structure:      

Possible Effects of Glyphosate on Mucorales Abundance in the Rumen of Dairy Cows in Germany

Glyphosate (N-phosphonomethyl glycine) is registered as a herbicide for many food and non-food crops, as well as non-crop areas where total vegetation control is desired. Glyphosate influences the soil mycobiota; however, the possible effect of glyphosate residues in animal feed (soybean, corn, etc.) on animal mycobiota is almost unknown. Accordingly, the present study was initiated to investigate the mycological characteristics of dairy cows in relationship to glyphosate concentrations in urine. A total of 258 dairy cows on 14 dairy farms in Germany were examined. Glyphosate was detected in urine using ELISA. The fungal profile was analyzed in rumen fluid samples using conventional microbiological culture techniques and differentiated by MALDI-TOF mass spectrometry. LPS-binding protein (LBP) and antibodies (IgG1, IgG2, IgA, and IgM) against fungi were determined in blood using ELISA. Different populations of Lichtheimia corymbifera, Lichtheimia ramosa, Mucor, and Rhizopus were detected. L. corymbifera and L. ramosa were significantly more abundant in animals containing high glyphosate (>40 ng/ml) concentrations in urine. There were no significant changes in IgG1 and IgG2 antibodies toward isolated fungi that were related to glyphosate concentration in urine; however, IgA antibodies against L. corymbifera and L. ramosa were significantly lower in the higher glyphosate groups. Moreover, a negative correlation between IgM antibodies against L. corymbifera, L. ramosa, and Rhizopus relative to glyphosate concentration in urine was observed. LBP also was significantly decreased in animals with higher concentrations of glyphosate in their urine. In conclusion, glyphosate appears to modulate the fungal community. The reduction of IgM antibodies and LBP indicates an influence on the innate immune system of animals.     

Biological control of the weed,Chromolaena odorata [Asteraceae], byPareuchaetes pseudoinsulata [Lep.: Arctiidae] on Guam and the northern Mariana Islands

Chromolaena odorata L. is a major weed of tropical plantations and pasture lands.Pareuchaetes pseudoinsulata Rego Barros [Lep.: Arctiidae] was mass-reared and released to control the weed on the Mariana Islands of Guam, Rota, Tinian and Saipan in the western Pacific. One year following establishment ofP. pseudoinsulata on Guam, the weed was reduced 100% at 3 of 4 sites monitored with fixed quadrats. Seed production was prevented if defoliation occurred prior to the beginning of the flowering season. If defoliation occurred shortly after flowering began, the developing seeds were eaten byP. pseudoinsulata or there was a significant reduction in weight and germination of seeds that matured. Eighteen months after establishing on Guam,P. pseudoinsulata had defoliated approximately 25,000 hectares of the weed. This is the 1^st report on the quantitative impact of any control agent forC. odorata, and though the long term effect of the insect is still unknown, these results are encouraging.     

Prey range of the predatory ladybird Cryptolaemus montrouzieri

The prey range of Cryptolaemus montrouzieri was studied in the laboratory to investigate whether the mealybug destroyer can contribute to the suppression of other pest insects besides mealybugs and to assess its potential impact on non-mealybug populations as part of an environmental risk assessment for its use in biological control. Prey tested in these experiments were: tobacco aphid Myzus persicae nicotianae (Sulzer)(Hemiptera: Aphididae), pea aphid Acyrthosiphon pisum (Harris)(Hemiptera: Aphididae), tobacco whitefly Bemisia tabaci (Gennadius)(Hemiptera: Aleyrodidae), southern green stinkbug Nezara viridula (L.)(Hemiptera: Pentatomidae) eggs, western flower thrips Frankliniella occidentalis (Pergande)(Thysanoptera: Thripidae), two-spotted ladybird Adalia bipunctata (L.)(Coleoptera: Coccinellidae) eggs and eggs of the greater wax moth Galleria mellonella L. (Lepidoptera: Pyralidae). Larval survival was high to moderate when C. montrouzieri was provided with hemipteran prey and poor to zero when the ladybirds were provided with non-hemipteran prey. Females reared on M. persicae and A. pisum produced similar numbers of eggs as their counterparts fed the citrus mealybug Planococcus citri (Risso)(Hemiptera: Pseudococcidae), but fecundity was significantly lower when the ladybirds were reared on B. tabaci nymphs or on A. bipunctata eggs. Prey species that were found to be less suitable for immature development of C. montrouzieri could still be an adequate food source for reproduction and survival of adult ladybirds. For example, only 8 % of the predator larvae reached the adult stage when provided with A. bipunctata eggs, but females that had developed on eggs of the Mediterranean flour moth Ephestia kuehniella Zeller (Lepidoptera: Pyralidae) and that were supplied with A. bipunctata eggs from adult emergence on, were only 35 % less fecund than females provided with mealybugs in their adult life. The results are discussed in relation to the development of a suitable methodology for prey/host range testing in the framework of an environmental risk assessment for arthropod natural enemies.     

The Indigo of Commerce in Colonial North America

It can be demonstrated that the Indigo of Commerce in Colonial North America consisted of three species in the genusIndigofera. One of these was a native plant,I. Caroliniana Mill, while the other two were introduced.Indigofera tinctoria L. (French Indigo), an Old World species, andI. Suffruticosa Mill. (Guatemala Indigo), a New World species, were both introduced into South Carolina in the late 17th and early 18th centuries. Their cultivation flourished until the American Revolution. Neither of the introduced species has become naturalized in the Carolinas.     

ATP-driven succinate oxidation in the catabolism of Desulfuromonas acetoxidans

The oxidation of succinate with elemental sulphur in Desulfuromonas acetoxidans was investigated using a membrane preparation of this bacterium. The following results were obtained:

1. The preparation catalyzed the oxidation of succinate with sulphur and NAD. These reactions were dependent on ATP and were abolished by the presence of protonophores or dicyclohexylcarbodiimide (DCCD).
2. The membrane preparation also catalyzed the reduction of fumarate with H₂S or with NADH. These activities were not dependent on ATP and were not affected by protonophores or DCCD.
3. By extraction-reincorporation experiments it could be shown that menaquinone is involved in electron transport between H₂S and fumarate and between NADH and fumarate.
4. The membrane fraction catalyzed the reduction of the water-soluble menaquinone-analogue dimethylnaphthoquinone (DMN) by succinate, H₂S, or NADH, and the oxidation of DMNH₂ by fumarate. These activities were not dependent on the presence of menaquinone and were not influenced by ATP.
5. The activities involving succinate oxidation or fumarate reduction were similarly sensitive to 2(n-nonyl)-4-hydroxyquinoline-N-oxide, while H₂S and NADH oxidation by DMN were not affected by the inhibitor.

It is concluded that the catabolism of D. acetoxidans involves the energy-driven oxidation of succinate with elemental sulphur or NAD as electron acceptors and that menaquinone is a component of the electron transport chain catalyzing these reactions.     

Cancer-testis gene expression profile in human melanoma cell lines

A growing number of evidence indicates that cancer-testis antigens (CTA) can be used as specific targets for immune therapy of malignant melanoma. The aim of this study was to provide a basis for selecting the most suitable CTA by analyzing the mRNA expression profile of genes encoding CTA in melanoma cell lines. We used a real-time quantitative PCR to measure the expression level for the following genes: GAGE1, NY-ESO-1, MAGEA1, PASD, SCP1, SEMG1, SPANXA, SSX1, and PRAME. The objects of study were cell lines mel P, mel Si, mel Mtp, mel Il, mel Hn, mel Ibr, and mel Kor obtained from patients diagnosed with disseminated melanoma. We established that the highest frequency of occurrence and the highest expression level had the following genes: GAGE1, NY-ESO-1, MAGEA1, SCP1, SPANXA, SSX1, and PRAME. Their mRNA translation products can be promising candidates for immunotherapy.     

Purification and characterization of antimicrobial substances from Bacillus licheniformis BFP011

Bacillus licheniformis BFP011 isolated from papaya (Thailand) could produce extracellular antimicrobial substances which were active against some important phytopathogens, pathogenics and spoilage microorganisms such as Colletotrichum capsici, Escherichia coli O157: H7 and Salmonella typhi ATCC 5784. The antimicrobial substances of this bacterium showed resistance to pronase enzyme and high temperature at 100 and 121°C for 15 min. They were purified by TLC on silica gel plates F254 using the different solvent mixtures. The best solvent mixture was revealed as n-butanol: ethanol: acetic acid: water (30: 60: 5: 30, v/v). The spots F4, F5 and F6 from TLC were able to inhibit growth of S. typhi ATCC 5784 assayed in vitro by the disc diffusion method. The characterization of the active fractions F4, F5 and F6 from TLC and reversedphase HPLC indicated that the antimicrobial substances of B. licheniformis BFP011 contain peptides and unsaturated fatty acids.     

Plant and animal communities in brackish supra-littoral pools (‘dobben’) in the northern part of the Netherlands

Fifty brackish supra-littoral pools bordering the Waddenzee were studied. The structure of plant communities (Potamogeton pectinatus L., Ranunculus baudotii Godr. and Zannichellia pedunculata Rchb.) is discussed in relation to water level fluctuations, chlorinity and water transparency. Chlorinity tolerances of the macrophytes (7 species) are discussed. The macrofauna was studied semi-quantitatively. The aquatic Coleoptera had the greatest diversity (24 species). A distinct relationship between the number of Coleoptera species and the percentage of macrophyte coverage was found. The distribution patterns of the most frequent species with respect to chlorinity categories are shown in histograms. The number of aquatic Heteroptera species is also discussed in relation to chlorinity and vegetation coverage. Less important macrofaunal groups (the Crustacea, Mollusca and Odonata) occurred in low species numbers.     

Middle Ottnangian (late Burdigalian) mollusks from the Rott Valley (SE Germany): the ultimate marine fauna of the Western Paratethys

The Bivalvia and Gastropoda from the Upper Marine Molasse deposits of the lower Rott Valley (North Alpine Foreland Basin, Lower Bavaria, SE Germany) comprise the first mollusk fauna of middle Ottnangian age (ca 17.5 Ma) to be documented in detail. Altogether, the assemblages from Brombach, Kainerding and Anzenkirchen yielded 27 species of Bivalvia and 9 species of Gastropoda. The bivalve species Spisula brombachensis n. sp. is described as new to science, and Aequipecten camaretensis is first reported from the Ottnangian of the North Alpine Foreland Basin. Furthermore, the well-preserved material allowed for the taxonomic revision of the Ottnangian index fossil Pecten herrmannseni. The bivalve community is dominated by suspension feeders, mostly shallow, soft bottom dwellers (Glycymeris, Anadara) and cementing epifauna (Ostrea). Gastropods almost exclusively comprise carnivorous browsers and predators. The parautochthonous assemblages are indicative of normal marine, well-oxygenized sandy-silty shoals at a water depth of presumably less than 20 m. Except for the presence of a single estuarine Crassostrea, the middle Ottnangian fauna is not indicative of reduced salinities. Consequently, the paleoenvironmental turnover to the brackish-water fauna of the directly overlying upper Ottnangian deposits of the Rzehakia Lake was abrupt. Glycymeris–Anadara–Ostrea communities similar to the one recorded from the Rott Valley are widespread in European seas and beyond during the Neogene and Quaternary.