Individual relationship between aneuploidy of gill cells and growth rate in the cupped oysters Crassostrea angulata, C. gigas and their reciprocal hybrids

The Portuguese oyster, Crassostrea angulata, is taxonomically close to the Pacific oyster, C. gigas, but there are clear genetic and phenotypic differences between these taxa. Among those differences, the faster growth of C. gigas compared with C. angulata has often been observed in the field. Crosses between C. angulata and C. gigas were performed to investigate the relationship between growth variation and somatic aneuploidy at the individual level in the two taxa and their reciprocal hybrids. The different progenies were reared in Ria Formosa (Portugal) under standard farming conditions. Growth rate and survival were significantly higher in C. gigas than in C. angulata, and the hybrids showed intermediate performances. Significant differences were also observed in the proportion of aneuploid cells (PAC) and of missing chromosomes (PMC) between the two taxa, C. angulata showing the highest values. Intermediate values of PAC and PMC were observed in the hybrids, supporting additive genetic bases of these parameters. Our results also confirm the negative correlation between somatic aneuploidy and growth rate at the individual level, as previously reported in C. gigas.     

Taxonomic data supporting differences between Allium elmaliense and Allium cyrilli

The first specimens of Allium elmaliense were collected in Elmal? (Antalya/Turkey) in 2001 and were described as new species in 2004. However, Allium elmaliense was claimed as synonym of Allium cyrilli in 2006. This study was undertaken to reveal the differences between these taxa utilizing morphological, palynological, and chromosome characters and genomic differences based on the DNA analyses along with the ecological preference studies conducted during 2006 and 2011. The results clearly indicated differences between these two taxa in terms of morphological characters, pollen, seed surfaces and niche preferences. Chromosome morphology and Td-DAMD-PCR fingerprinting studies revealed that Allium elmaliense Deniz & Sümbül is a distinct species and not a synonym of A. cyrilli Ten.     

Helminth Communities of Owls (Strigiformes) Indicate Strong Biological and Ecological Differences from Birds of Prey (Accipitriformes and Falconiformes) in Southern Italy

We compared the helminth communities of 5 owl species from Calabria (Italy) and evaluated the effect of phylogenetic and ecological factors on community structure. Two host taxonomic scales were considered, i.e., owl species, and owls vs. birds of prey. The latter scale was dealt with by comparing the data here obtained with that of birds of prey from the same locality and with those published previously on owls and birds of prey from Galicia (Spain). A total of 19 helminth taxa were found in owls from Calabria. Statistical comparison showed only marginal differences between scops owls (Otus scops) and little owls (Athene noctua) and tawny owls (Strix aluco). It would indicate that all owl species are exposed to a common pool of ‘owl generalist’ helminth taxa, with quantitative differences being determined by differences in diet within a range of prey relatively narrow. In contrast, birds of prey from the same region exhibited strong differences because they feed on different and wider spectra of prey. In Calabria, owls can be separated as a whole from birds of prey with regard to the structure of their helminth communities while in Galicia helminths of owls represent a subset of those of birds of prey. This difference is related to the occurrence in Calabria, but not Galicia, of a pool of ‘owl specialist’ species. The wide geographical occurrence of these taxa suggest that local conditions may determine fundamental differences in the composition of local communities. Finally, in both Calabria and Galicia, helminth communities from owls were species-poor compared to those from sympatric birds of prey. However, birds of prey appear to share a greater pool of specific helmith taxa derived from cospeciation processes, and a greater potential exchange of parasites between them than with owls because of phylogenetic closeness.     

Comparative osteology of lotaks, Cyprinion kais and C. macrostomum (Cypriniformes, Cyprinidae), from Godarkhosh River, western Iran

Osteology of two cyprinid fishes, Cyprinion kais and C. macrostomum, from the Tigris-Euphrates basin was described and compared. Eight specimens of C. kais and ten specimens of C. macrostomum from Godarkhosh River (western Iran) were studied. The skeletal elements were prepared using clearing and softening methods and photographed. The differences between the two taxa include a deeper posterior position of the lower jaw with a much narrower labial surface, a longer last dorsal unbranched ray with weaker posterior serration, and a more embowed dentary, maxillary and premaxillary in C. kais. Based on these differences, the examined specimens of these two taxa could be easily distinguished.     

Phenotypic Variation in Infants,Not Adults,Reflects Genotypic Variation among Chimpanzees and Bonobos

Studies comparing phenotypic variation with neutral genetic variation in modern humans have shown that genetic drift is a main factor of evolutionary diversification among populations. The genetic population history of our closest living relatives, the chimpanzees and bonobos, is now equally well documented, but phenotypic variation among these taxa remains relatively unexplored, and phenotype-genotype correlations are not yet documented. Also, while the adult phenotype is typically used as a reference, it remains to be investigated how phenotype-genotye correlations change during development. Here we address these questions by analyzing phenotypic evolutionary and developmental diversification in the species and subspecies of the genus Pan. Our analyses focus on the morphology of the femoral diaphysis, which represents a functionally constrained element of the locomotor system. Results show that during infancy phenotypic distances between taxa are largely congruent with non-coding (neutral) genotypic distances. Later during ontogeny, however, phenotypic distances deviate from genotypic distances, mainly as an effect of heterochronic shifts between taxon-specific developmental programs. Early phenotypic differences between Pan taxa are thus likely brought about by genetic drift while late differences reflect taxon-specific adaptations.     

Chromosome studies in southern species of Mimosa (Fabaceae,Mimosoideae) and their taxonomic and evolutionary inferences

In this work, chromosome numbers and karyotype parameters of 36 taxa of the genus Mimosa were studied, especially from the southern South America center of diversification. Results support that x = 13 is the basic chromosome number in the genus. Polyploidy is very frequent, ca. 56 % of the total of the studied species here are polyploid, confirming that polyploids are more frequent at higher latitudes. The most common ploidy levels found are 2x and 4x, but some species studied exhibit 6x and 8x. In different groups, several ploidy levels were found. Parameters of chromosome size show statistically significant differences between close species, and asymmetry index A ₂ exhibited low variation between them. It is possible to infer variations of chromosome size between diploids and tetraploids and between basal and derived taxa. The present studies confirm or reveal polyploidy in several groups of South America which are highly diversified in the southernmost area of distribution of the genus, such as sect. Batocaulon ser. Stipellares and sect. Calothamnos. Our data are discussed in a taxonomic context, making inferences about the origin of some polyploid taxa. Polyploidy could be an important phenomenon that increases the morphologic diversity and specific richness in southern South America. On basis of our data, it is possible to hypothesize hybridization between same-ploidy level or different ploidy level taxa. As already shown in the literature, our results confirm the importance of the polyploidy in the speciation of the genus.     

Chromosome numbers in Tripleurospermum Sch. Bip. (Asteraceae) and closely related genera: relationships between ploidy level and stomatal length

This study includes 24 reports of chromosome counts in Tripleurospermum Sch. Bip. (20 taxa), Anthemis L. (1 species) and Matricaria L. (3 taxa) belonging to the tribe Anthemideae of the family Asteraceae from Turkey. Chromosome numbers of these taxa are 2n = 2x = 18, 3x = 27 and 4x = 36. Nine counts are new reports, one is not consistent with previous report, and the remainder confirm earlier information. Statistically significant differences depending on ploidy level, stomatal length or environmental factors such as altitude were determined in Tripleurospermum. Several systematic and evolutionary aspects of the genera are discussed in the light of chromosomal data.     

Different contributions of birds and mammals to seed dispersal of a fleshy-fruited tree

Birds and mammals are important seed dispersers of fleshy-fruited plants. Although their behaviors are different, they frequently consume the same species. Thus to understand the dispersal of fleshy-fruited plants, the contribution of birds and mammals to seed dispersal has to be evaluated. Besides, within birds or mammals, some species may functionally different from others. In this study, we examined seed dispersal of the fleshy-fruited tree Swida controversa focusing on the difference between two frugivore groups (birds and mammals), and differences between species within groups. Collected seeds and S. controversa trees were identified using simple sequence repeat (SSR) genotyping, thus enabling to determine the distance between mother tree and dispersed seeds. The avian species were identified by DNA barcoding of feces, whereas the mammalian species were identified by the shape and smell of feces. Most seeds that fell near or under the maternal trees were dispersed by birds, resulting in short seed dispersal distances (average, 13 m). DNA barcoding detected five taxa of avian dispersers. No differences were detected in seed dispersal distance by different avian taxa (i.e., the distance between dispersed seeds and their maternal trees within the research plot); however the rate of seed immigration from outside the research plot by some avian taxa varied significantly. The seed dispersal distance by mammals was significantly further (127 m; min > 50 m) than that by birds. Additionally, immigrated seeds accounted for approximately two-thirds of mammal-dispersed seeds, indicating that these seeds were from outside the research plot, and that mammals significantly contributed to the long-distance seed dispersal of S. controversa. No differences in seed dispersal distance were detected between different mammalian taxa. Overall, this study revealed that birds and mammals show clearly different seed dispersal patterns, and thus, they play different roles in the regeneration of S. controversa.     

Taxonomic status of Pseudopleuronectes yokohamae and P. schrenki (Pleuronectidae sensu Cooper and Chapleau, 1998)

In studying the variation of the taxa group Pseudopleuronectes yokohamae and P. schrenki from various areas in the Sea of Japan, significant differences in the combination of morphometric and meristic characters were not revealed. It was found that typical characters such as fin coloration from the blind side of the body, number of rays in the fins, number of scales in the lateral line, etc. that are used by most authors to distinguish P. yokohamae and P. shrenki strongly vary and are not adequate for assigning individuals to a certain taxon. A conclusion of the absence of differences and, hence, the homogeneity of the group studied is supported by genetic-biochemical studies, as well as by analysis of the lateral line system of these two groups of flatfish. Considering the results obtained and literature data on the morphology and ecology of flatfish taxa considered in the paper, it is justifiable to consider the P. yokohamae + P. schrenki group as one polymorphic species Pseudopleuronectes yokohamae Günther, 1877. The second taxon, P. shrenki, as a later species, should be considered a synonym of the species P. yokohamae.     

A case of mistaken identity,Opuntia abjecta,long-lost in synonymy under the Caribbean species,O. triacantha,and a reassessment of the enigmatic O. cubensis

Opuntia abjecta and O. militaris have been placed in synonymy under the Caribbean species O. triacantha for the past 30 years. Recent molecular phylogenetic evidence has shown, however, that O. abjecta and O. triacantha are actually in two very different clades suggesting that the Floridian endemic O. abjecta should be recognized as a distinct species. Here, we summarize major morphological differences between O. abjecta and O. triacantha. We also include new sequence data from the rare Cuban taxon, O. militaris, in a molecular phylogenetic analysis to determine its relationship to O. triacantha and O. abjecta. We discuss the putative hybrid taxa O. cubensis and O. ochrocentra, which currently are treated as synonyms. We also show through analysis of morphological and molecular characters that these two taxa were derived from two independent origins from divergent maternal progenitors, confirming that O. ochrocentra should not be treated as synonymous with O. cubensis. A key is provided for identifying these taxonomically confusing taxa and their close relatives. This study emphasizes the distinctions among O. abjecta, O. militaris, and O. triacantha and illustrates that extreme caution must be employed when using herbarium specimens for identifying species of Opuntia. It also indicates that broad phytogeographic assumptions regarding species’ relationships in Opuntia may sometimes be misleading. Hybridization and polyploidy are common in Opuntia and have played a role in the formation of new species in this group as well. A neotype is here designated for O. triacantha.     

Differences in chemical signals may explain species recognition between an island lizard, Podarcis atrata, and related mainland lizards, P. hispanica

Chemical signals can be the basis of interspecific recognition and speciation in many animals. The Columbretes Islands wall lizard, Podarcis atrata is very close genetically to the mainland Iberian wall lizard Podarcis hispanica. However, a previous study suggested that chemosensory interspecific recognition would avoid reproductive interactions and hybridization between these two species. These results suggested that chemicals used in intraspecific communication might differ in composition and/or proportions between these two species. In this paper, we used gas chromatography–mass spectrometry (GC–MS) to characterize the chemical composition of the lipophilic fraction from femoral gland secretions of male P. atrata and P. hispanica. The analysis showed that chemicals found in femoral secretions varied in composition and proportions between species and between populations. Seven steroids and two unidentified waxy esters, were exclusive of P. atrata lizards from the islands. In contrast, nine steroids and other six compounds were only found in mainland P. hispanica. There were also differences in proportions of shared compounds between species. Moreover, all these differences were higher between P. atrata and P. hispanica than between any population of P. hispanica. Chemical differences might be consequence of genetic differences, but they could also be explained by adaptation to different habitats with different climatic conditions or diet resources. Compounds that are specific of each species, or differences in the pattern of compounds, could explain species recognition. Therefore, these results of chemical composition and previous studies of chemosensory recognition reinforce the fact that the genetic differences between P. hispanica and P. atrata may result in an effective reproductive isolation between these two taxa.     

Diatom communities along pH and hydrological gradients in three montane mires,central China

The distribution patterns of epiphytic diatom assemblages in three montane mires in central China were investigated to examine their relationships with selected environmental variables (pH and depth to water table, DWT). Two of the mires are considered to be in good ecological condition (Dajiuhu and Qizimeishan Mires) while Erxianyan Mire is extensively affected by acid deposition and human activities. A total of 206 taxa belonging to 56 genera were found in 44 Sphagnum samples. Multivariate analysis revealed that pH and DWT were significantly correlated with diatom distribution. In Erxianyan Mire, the characteristic taxa (Eunotia minor and Eunotia intermedia) had lower pH optima and may therefore be useful indicators of highly-acidic conditions. In Dajiuhu Mire, the dominant species had higher pH optima, and abundant xerotolerant taxa (Hantzschia amphioxys, Pinnularia borealis, Luticola mutica and Diadesmis contenta) were observed. In the partial canonical correspondence analyses with mire location as a covariable, the correlation between diatom data and pH was insignificant, likely because pH differences between mires were greater than those within mires. In contrast, diatom data were significantly correlated with DWT, suggesting that diatoms are good sensors of hydrological variability along the hollow to hummock gradient. Together, these data can expand current autecological information for these potential diatom indicator species, which is critical for refining our interpretations of bio-monitoring and palaeolimnological studies in montane mires.     

A comparative study on two closely relative Tulipa L. taxa from NE Anatolia

This study presents observations on the anatomical, palynological and ecological features of Tulipa gumusanica Terzio?lu and its morphologically similar relative, T. armena Boiss. var. armena, in order to clarify their similarities and differences. We found that these taxa have some important differences with regard to anatomical, palynological and ecological features, as well as morphological traits. General anatomical traits of both examined taxa are similar, both having isolateral leaves with distinct hypodermis and a stem with distinct monolayer collenchyma close to the epidermis. However, some anatomical characters such as mesophyll width, average number of stomata on lower epidermis, and epidermal cells on upper epidermis are found to be important in delimiting these taxa. In addition, considerable differences have been observed in pollen shape and size. The species differ ecologically in that T. gumusanica prefers slightly acidic soil with low organic content in the woodland, whereas T. armena var. armena prefers slightly alkali soil with high organic content in steppe vegetation.     

Genomic islands of speciation in Anopheles gambiae

The African malaria mosquito, Anopheles gambiae sensu stricto (A. gambiae), provides a unique opportunity to study the evolution of reproductive isolation because it is divided into two sympatric, partially isolated subtaxa known as M form and S form. With the annotated genome of this species now available, high-throughput techniques can be applied to locate and characterize the genomic regions contributing to reproductive isolation. In order to quantify patterns of differentiation within A. gambiae, we hybridized population samples of genomic DNA from each form to Affymetrix GeneChip microarrays. We found that three regions, together encompassing less than 2.8 Mb, are the only locations where the M and S forms are significantly differentiated. Two of these regions are adjacent to centromeres, on Chromosomes 2L and X, and contain 50 and 12 predicted genes, respectively. Sequenced loci in these regions contain fixed differences between forms and no shared polymorphisms, while no fixed differences were found at nearby control loci. The third region, on Chromosome 2R, contains only five predicted genes; fixed differences in this region were also verified by direct sequencing. These “speciation islands” remain differentiated despite considerable gene flow, and are therefore expected to contain the genes responsible for reproductive isolation. Much effort has recently been applied to locating the genes and genetic changes responsible for reproductive isolation between species. Though much can be inferred about speciation by studying taxa that have diverged for millions of years, studying differentiation between taxa that are in the early stages of isolation will lead to a clearer view of the number and size of regions involved in the genetics of speciation. Despite appreciable levels of gene flow between the M and S forms of A. gambiae, we were able to isolate three small regions of differentiation where genes responsible for ecological and behavioral isolation are likely to be located. We expect reproductive isolation to be due to changes at a small number of loci, as these regions together contain only 67 predicted genes. Concentrating future mapping experiments on these regions should reveal the genes responsible for reproductive isolation between forms.     

Molecular studies did not support the distinctiveness of Malva alcea and M. excisa (Malvaceae) in Central and Eastern Europe

Relics of Malva alcea are found in Central and Western Europe. A similar taxon, M. excisa, is native to the eastern parts of Europe. According to selected sources, the geographical range boundary of the above taxa intersects Poland. Taxonomic research relying on key morphological features (the depth of corolla petal incisions and the type of hairs covering the stem) did not clearly validate the distinctness of those species. Genetic variation between Malva alcea and M. excisa was analyzed using ISSR and ISJ markers. The performed analysis did not reveal statistically significant differences at the level of genetic diversity between M. alcea and M. excisa populations. The obtained genetic identity values (I = 0.985) do not support the identification of eastern populations as a distinct biological species of M. excisa. The applied DNA markers did not reveal species-specific bands supporting molecular identification of those taxa. The obtained genetic identity values were verified by neighbor-joining grouping which showed that M. alcea and M. excisa did not form corresponding clusters, thus pointing to an absence of significant differences between the analyzed taxa. Differences between the above species were not revealed by an analysis of the sequences of chloroplast regions trnHpsbA and rpoC1, either.     

Comparative assessment of habitat suitability and niche overlap of three medicinal and melliferous Satureja L. species (Lamiaceae) from the eastern Adriatic region: Exploring potential for cultivation

In Croatia, there are three Satureja species groups (tSsg) within the Satureja L. genus that are most widely used as medicinal and melliferous plants: the Satureja montana complex, S. subspicata complex and S. cuneifolia. Due to the high melliferous and medicinal potential of these taxa, our objective was to comparatively assess the habitat suitability of the tSsg to estimate their cultivation potential in the eastern Adriatic region. In addition, we assessed their overlaps in geographic and environmental space and investigated the occurrence of the putative hybrid taxon S. × karstiana in the areas of overlap between the two parental taxa (S. montana and S. subspicata). Finally, the differences in the environmental preferences of these three related species groups were investigated. The species distribution models were built using the maximum entropy method (MaxEnt) based on the occurrences of the tSsg, obtained from our field research in 2018–2021 and partly from the Flora Croatica Database. Six environmental variables (three bioclimatic and three topographic) were selected as predictors. The potential habitat suitability of the tSsg under current conditions showed high predictive model performance, with AUC values ranging from 0.890 to 0.910 ± 0.025. The environmental predictors with the highest mean percent contributions to the models were annual temperature range (Bio 7) for S. montana (74.3%) and S. subspicata (65.9%) and downwards surface solar radiation (Srad) for S. cuneifolia (40%). Majority (>90%) of the known S. × karstiana hybrid occurrences were found within the areas of habitat suitability overlap between the two parental taxa, confirming the model accuracy and efficiency in the discovery of putative hybrids. Finally, the niche overlap in environmental space between the investigated taxa pairs was the highest between S. montana and S. subspicata, enabling their hybridization, and lowest between S. cuneifolia and S. subspicata. Due to the widest potential distribution and broadest environmental niche, our results suggest that S. montana has the highest potential for cultivation for medicinal and melliferous purposes in the eastern Adriatic, particularly in light of ongoing climate change.     

Morphological variation and its taxonomic and evolutionary significance in the Hawaiian Psychotria (Rubiaceae)

Morphological evidence resulting from a taxonomic revision of the genusPsychotria in the Hawaiian Islands supports previous work which recognized sectionsPelagomapouria andStraussia. The differences between these sections in inflorescence architecture, flower size, anther attachment, and pyrene anatomy, strongly support the contention that at least two introductions to the Hawaiian Archipelago were responsible for the origin of these sections. Whereas the taxa in sectionPelagomapouria are quite distinct from one another morphologically, those in sectionStraussia demonstrate almost continuous morphological intergradation.Straussia taxa also tend to become less distinct when followed from the older to the younger islands of the archipelago. Morphological variation within several complex species is illustrated. The morphological evidence supports the hypothesis thatStraussia has had a shorter tenure in the Hawaiian Islands than hasPelagomapouria and is in a relatively early evolutionary stage of adaptive radiation and speciation.     

Phytoplankton indicator taxa for reference conditions in Northern and Central European lowland lakes

Phytoplankton data from 606 lakes were used to characterize indicator taxa of near-pristine reference conditions in clearwater and humic lowland lakes of Northern and Central Europe. Reference lakes were selected based on low pressure from catchment land-use, low population density and the absence of point sources. Reference lakes had low phytoplankton biomass and taxa richness compared to non-reference lakes. In low alkalinity lakes of Northern Europe, the reference communities had high biomass proportions of chrysophytes and low proportions of cyanobacteria; in the Central European high alkalinity lakes, the biomass was distributed more evenly among algal groups. Indicator species analysis and similarity analysis listed 5–29 taxa indicating reference conditions. Indicator taxa differed especially between the low alkalinity and the high alkalinity lakes, but there were also country-specific differences. Most common indicator taxa for the northern reference lakes were chrysophytes (e.g. Bitrichia, Dinobryon). In the Central European reference lakes, diatoms (e.g. Cyclotella) were more characteristic. Despite the differences, there was a general finding that taxa present in reference lakes were often also present in non-reference lakes, but typically in lower biomass proportions; another characteristic of the reference communities is the absence of many taxa typically found in non-reference lakes.