Genetic diversity and phylogeographic structure of Bactrian camels shown by mitochondrial sequence variations

The Bactrian camel includes various domestic (Camelus bactrianus) and wild (Camelus ferus) breeds that are important for transportation and for their nutritional value. However, there is a lack of extensive information on their genetic diversity and phylogeographic structure. Here, we studied these parameters by examining an 809‐bp mtDNA fragment from 113 individuals, representing 11 domestic breeds, one wild breed and two hybrid individuals. We found 15 different haplotypes, and the phylogenetic analysis suggests that domestic and wild Bactrian camels have two distinct lineages. The analysis of molecular variance placed most of the genetic variance (90.14%, P < 0.01) between wild and domestic camel lineages, suggesting that domestic and wild Bactrian camel do not have the same maternal origin. The analysis of domestic Bactrian camels from different geographical locations found there was no significant genetic divergence in China, Russia and Mongolia. This suggests a strong gene flow due to wide movement of domestic Bactrian camels.     

Systematic and palaeoecological significance of the first record of Pygocephalomorpha females bearing oöstegites (Malacostraca,Peracarida) from the lower Permian of southern Brazil

Malacostracan crustaceans of the fossil order Pygocephalomorpha are conspicuous elements in brackish to freshwater faunas in the upper Carboniferous of Laurentia and lower Permian of Gondwana. A pronounced sexual dimorphism is recognizable within its members, with Pygocephalomorpha females bearing oöstegites: modified epipodites that hold a brood pouch where the eggs develop until juvenile stage, with no planktonic dispersal of larvae. The preservation of oöstegites is quite rare and is described here for the first time from the American continents. The specimens, ventrally preserved Liocaris huenei females bearing oöstegites, come from the Irati Formation, a lower Permian sequence of the Paraná Basin, from an outcrop in southern Brazil. The oöstegites are similar to those previously described for Pygocephalomorpha, displaying seven pairs of overlapping epipodites that cover the whole cephalothorax. The scarcity of these structures in the fossil record may be explained by taphonomic bias (it requires ventrally preserved crustaceans) but more likely by palaeobiological aspects, such as preservation of an ovigerous moult. The record from the Irati Formation suggests that pygocephalomorphs had seasonal reproduction, with females maturing at the same time and acquiring oöstegites that would be lost after the release of juveniles. This record confirms the relationship of the Brazilian Liocaris Beurlen to the English Pygocephalus Huxley and South African Notocaris Broom pygocephalomorphs and provides an insight into its palaeoecological significance.     

Tragelaphus nakuae: evolutionary change,biochronology, and turnover in the African Plio‐Pleistocene

Fossil Bovidae constitute one of the most significant proxy records for evolutionary and palaeoecological change in Africa. Tragelaphus nakuae is a regularly encountered antelope in the East African Plio‐Pleistocene, and is a common component of hominin faunas. As previously understood, this species ranged for almost 2 million years, encompassed a large range of morphological variation, exhibited relative stasis in the face of environmental perturbations, and left no known living descendants. I here review and revise the fossil record of this tragelaphin bovid, finding that specimens older than ～2.8 Mya and previously attributed to T. nakuae or a close form are in fact referable to a distinct, but ancestral, species. This new interpretation adds these fossil tragelaphins to the body of evidence supporting major faunal turnover occurring around 2.8 Mya in concert with global climatic change. I also document morphological changes that occur through the duration of T. nakuae, particularly after 2.3 Mya. These taxonomic revisions allow for refined biochronological estimates for several East African Plio‐Pleistocene sites and specimen assemblages of uncertain age. A phylogenetic analysis suggests that the T. nakuae lineage is related to the extant bongo (Tragelaphus eurycerus), relating this living but enigmatic forest antelope to the fossil record. One resulting palaeoecological hypothesis is that the bongo's modern fragmented range represents the relicts of a much more widely distributed late Pliocene African forest belt. This study highlights the importance of specimen‐based approaches for elucidating the pattern and timing of major evolutionary events. © 2011 The Linnean Society of London, Zoological Journal of the Linnean Society, 2011, 162 , 699–711.     

Ticks (Acari: Ixodidae) infesting the Arabian Camel (Camelus dromedarius) in the Sinai,Egypt with a note on the acaricidal efficacy of Ivermectin

In this study, tick burdens on camels (Camelus dromedarius) were determined in the vicinity of the St. Catherine monastery, Sinai, Egypt. In total 2,545 ticks (1,491 adults and 1,054 nymphs) were collected and identified. Mean tick burdens were relatively heavy and the range in number of ticks per camel was very broad (6–173). Hyalomma dromedarii was the predominant tick species and accounted for 95.6% of the adult ticks. Other ticks found were H. marginatum subspp. and H. anatolicum excavatum. All nymphs collected were Hyalomma spp.In addition, the effect of ivermectin (Ivomec MSD AGVET) on tick burdens, when given subcutaneously at 0.2 mg/kg¹, was evaluated in nine camels in the date-palm plantation of Kibbutz Yahel in the Arava valley, Israel. Initial tick burdens on these camels (half-body tick counts) ranged from 20–105 ticks per camel. Seven camels from the same herd with half-body tick counts ranging from 40–107 ticks per camel were not treated and served as a control group. Ivermectin was not effective against Hyalomma tick infestation in camels under these conditions.     

The African species Megantereon whitei from the Early Pleistocene of Monte Argentario (South Tuscany,Central Italy)

A partial skull and articulated postcranial elements of Megantereon whitei have been recorded during the 1950s from a karst deposit in the Monte Argentario area (Grosseto). These fossils recently became available for study. The bones are quite well preserved, included in a hard reddish matrix with calcareous clasts. The fossil is part of a faunal assemblage referred to the Late Villafranchian (Early Pleistocene). M. whitei from Monte Argentario is characterised by elongated upper canines, stronger than those of the Upper Valdarno (Tuscany) specimens and similar to the Pirro Nord (Apulia) fossil. The manus is robust, the first phalanges are quite long in comparison to the metacarpals. The Early Pleistocene European M. whitei represents an African element that took part in the faunal dispersal from Africa to Europe that occurred at the Plio-Pleistocene transition.     

Plio-Pleistocene cercopithecids from Kanam East, western Kenya

This paper describes cercopithecid craniodental and postcranial fossils recovered by L. S. B. Leakey at Kanam East, Kenya during the early 1930s. These fossil monkeys have been generally assumed to have been derived from early Pliocene horizons, but their exact geographical and stratigraphical provenience is unknown. Although the question of the evolutionary significance of these specimens must await the recovery of more securely dated material from Kanam East, some general conclusions can be drawn concerning their taxonomic affinities and paleobiology. Based on comparative studies of the craniodental material, at least three extant genera are represented—Colobus,Lophocebus, andCercopithecus. The postcranial fossils include a number of hindlimb specimens, as well as the manubrium of a sternum and a caudal vertebra. Identification of the postcranial remains to particular genera is not possible, but they are similar in morphology to modern arboreal and semiterrestrial cercopithecid monkeys of small to medium size. It is evident that Kanam East had a diverse cercopithecid community, similar to those found today in forested and woodland habitats, and this may be of some significance in reconstructing the paleoecology of the site. Because the fossil record of most extant cercopithecid genera is rather sparse at Plio-Pleistocene sites in Africa, Kanam East represents one of only a few sites that has yielded material that can be assigned toColobus,Lophocebus, orCercopithecus. The fossil monkeys from the site, therefore, provide additional evidence to help reconstruct the paleobiology, as well as the patterns of species diversity and community structure that characterized the cercopithecid radiation during the Plio-Pleistocene.     

Fossil remains of Macaca sylvanus florentina (Cocchi, 1872) (Primates, Cercopithecidae) from the Early Pleistocene of Quibas (Murcia, Spain)

The macaque material from the Early Pleistocene site of Quibas (Albanilla, Murcia, Spain), including dentognathic remains, isolated teeth and some postcranial bone fragments, is described. Both metrically and morphologically, this sample must be attributed to Macaca sylvanus (the Barbary macaque). This species is currently distributed through North Africa and Gibraltar, but was much more widely distributed during the Plio-Pleistocene, being represented by several European fossil subspecies. Metrical comparisons of dental size and proportions between extant M. s. sylvanus and fossil Macaca sylvanus florentina from the type locality and other Italian sites are undertaken, in order to classify the remains from Quibas at the subspecies level. The results show that the Quibas sample not only fits the range of variation of M. s. florentina from the type locality, but also differs from the extant Barbary macaque condition in several regards. This permits us to formally attribute the material from Quibas to M. s. florentina. The material described in this paper therefore significantly improves the knowledge of this fossil taxon, particularly regarding the upper dentition, and further confirms the taxonomic distinctiveness of this extinct taxon at the subspecies rank. Taken as a whole, M. s. florentina largely overlaps in dental dimensions with M. s. sylvanus, but differs from the latter by displaying (on average): (1) absolutely longer upper molars (especially M¹ and M³); (2) relatively wider upper molars (especially M¹ and M²); (3) longer M³ as compared with the M²; (4) absolutely longer M₁ and M₃; and (5) relatively narrower M₃.     

Anthracotheriid artiodactyl Anthracokeryx and an upper Eocene age for the Youganwo Formation of southern China

Abstract

The two recently collected mammalian dentary fragments from the Eocene Youganwo Formation of Guangdong Province, southern China, are referred to the anthracotheriid species Anthracokeryx naduongensis based on phylogenetic analysis and size comparison. One of these specimens (SYSU-M-1) is the first mammal fossil described from the Youganwo Formation. It was attributed previously to the perissodactyl genus Lunania. Anthracokeryx naduongensis was described originally from the lower upper Eocene Na Duong Formation in Northern Vietnam. The second record of this species supports a basal upper Eocene correlation for the Youganwo Formation, which was estimated previously as middle or late Eocene.     

Brief communication: Possible third molar impactions in the hominid fossil record

Impacted third molars affect 15%–20% of modern Americans and Western Europeans. In contrast, third molar impactions have not been reported in the early hominid fossil record. It is uncertain whether the lack of reports reflects an absence of impactions or a failure to recognize them. This communication is intended to raise awareness of the possibility of impactions by describing the appearance of impacted teeth and by noting two possible instances of impaction in early hominids. Specifically, the mandibular third molars of the Sterkfontein specimen, STS52b (Australopithecus africanus), and the left maxillary third molar of the Lake Turkana specimen, KNM-WT17400 (Australopithecus boisei), are positioned in a manner which suggests that they would not have erupted normally. Both specimens also exhibit strong crowding of the anterior dentition, providing further support for the view that these individuals lacked sufficient space for normal eruption of the third molars. Other published reports of dental crowding in the hominid fossil record are noted, and it is suggested that more attention be paid to dental impaction and dental crowding in hominid evolution. © 1993 Wiley-Liss, Inc.     

High mitochondrial differentiation levels between wild and domestic Bactrian camels: a basis for rapid detection of maternal hybridization

Hybridization between wild species and their domestic congeners often threatens the gene pool of the wild species. The last wild Bactrian camel (Camelus ferus) populations in Mongolia and China are examples of populations facing such a hybridization threat. To address this key issue in the conservation of wild camels, we analysed wild, hybrid and domestic Bactrian camels (Camelus bactrianus) originating from Mongolia, China and Austria. Through screening of an 804‐base‐pair mitochondrial fragment, we identified eight mitochondrial haplotypes and found high sequence divergence (1.9%) between C. ferus and C. bactrianus. On the basis of a mitochondrial DNA sequence fixed difference, we developed a diagnostic PCR restriction fragment length polymorphism (PCR‐RFLP) assay to differentiate between wild and domestic camel samples. We applied the assay to 81 individuals and confirmed the origin of all samples including five hybrids with known maternal ancestry. The PCR‐RFLP system was effective for both traditional (blood, skin) and non‐invasive samples (faeces, hair), as well as for museum specimens. Our results demonstrate high levels of mitochondrial differentiation between wild and domestic Bactrian camels and that maternal hybridization can be detected by a rapid and reliable PCR‐RFLP system.     

Surface Model and Tomographic Archive of Fossil Primate and Other Mammal Holotype and Paratype Specimens of the Ditsong National Museum of Natural History,Pretoria, South Africa

Nearly a century of paleontological excavation and analysis from the cave deposits of the Cradle of Humankind UNESCO World Heritage Site in northeastern South Africa underlies much of our understanding of the evolutionary history of hominins, other primates and other mammal lineages in the late Pliocene and early Pleistocene of Africa. As one of few designated fossil repositories, the Plio-Pleistocene Palaeontology Section of the Ditsong National Museum of Natural History (DNMNH; the former Transvaal Museum) curates much of the mammalian faunas recovered from the fossil-rich deposits of major South African hominin-bearing localities, including the holotype and paratype specimens of many primate, carnivore, and other mammal species (Orders Primates, Carnivora, Artiodactyla, Eulipotyphla, Hyracoidea, Lagomorpha, Perissodactyla, and Proboscidea). Here we describe an open-access digital archive of high-resolution, full-color three-dimensional (3D) surface meshes of all 89 non-hominin holotype, paratype and significant mammalian specimens curated in the Plio-Pleistocene Section vault. Surface meshes were generated using a commercial surface scanner (Artec Spider, Artec Group, Luxembourg), are provided in formats that can be opened in both open-source and commercial software, and can be readily downloaded either via an online data repository (MorphoSource) or via direct request from the DNMNH. In addition to providing surface meshes for each specimen, we also provide tomographic data (both computerized tomography [CT] and microfocus [microCT]) for a subset of these fossil specimens. This archive of the DNMNH Plio-Pleistocene collections represents the first research-quality 3D datasets of African mammal fossils to be made openly available. This simultaneously provides the paleontological community with essential baseline information (e.g., updated listing and 3D record of specimens in their current state of preservation) and serves as a single resource of high-resolution digital data that improves collections accessibility, reduces unnecessary duplication of efforts by researchers, and encourages ongoing imaging-based paleobiological research across a range of South African non-hominin fossil faunas. Because the types, paratypes, and key specimens include globally-distributed mammal taxa, this digital archive not only provides 3D morphological data on taxa fundamental to Neogene and Quaternary South African palaeontology, but also lineages critical to research on African, other Old World, and New World paleocommunities. With such a broader impact of the DNMNH 3D data, we hope that establishing open access to this digital archive will encourage other researchers and institutions to provide similar resources that increase accessibility to paleontological collections and support advanced paleobiological analyses.     

Chimpanzee variation facilitates the interpretation of the incisive suture closure in South African Plio-Pleistocene hominids

For a better understanding of early hominid growth patterns, we need to compare skeletal maturation among humans and chimpanzees. This study provides new data on variation of the incisive suture closure in extant species to facilitate the understanding of growth patterns among South African Plio-Pleistocene hominids. The complete anterior closure of the incisive suture occurs early during human life, mostly before birth. In contrast, in chimpanzees a complete anterior closure occurs mostly after the eruption of either the first permanent molars (pygmy chimpanzees) or the third molars (common chimpanzees). The first aim of this study is to test whether the patterns of closure of both the anterior and palatal components of the incisive suture in chimpanzees accurately mirror their polytypism by investigating 720 museum specimens of known geographical origin. Then we use the data gleaned from the incisive suture closure in chimpanzees to determine whether there are different growth patterns among South African Plio-Pleistocene hominids and to interpret them. Results about the pattern of incisive suture closure are consistent with the differences among chimpanzees as revealed by molecular data. Thus, the variation in chimpanzee patterns of incisive suture closure facilitates the interpretation of morphology in South African fossil hominids. In Australopithecus (Paranthropus) robustus as compared to Australopithecus africanus, the complete anterior closure and, probably, the complete palatal closure of the incisive suture occurs during early life in the same way as they occur in humans. Moreover, the closure pattern observed on Stw 53, a supposed early Homo from Sterkfontein Member 5, is similar to that seen in A. africanus and in chimpanzees. Thus, with respect to the anterior component of the incisive suture, A. africanus and Stw 53 retain the primitive feature for which A. (P.) robustus and Homo share the derived character state. Finally, it is worth noting that the Taung child does not show the robust condition. Am J Phys Anthropol 105:121–135, 1998. © 1998 Wiley-Liss, Inc.     

The Hand of Cercopithecoides williamsi (Mammalia,Primates): Earliest Evidence for Thumb Reduction among Colobine Monkeys

Thumb reduction is among the most important features distinguishing the African and Asian colobines from each other and from other Old World monkeys. In this study we demonstrate that the partial skeleton KNM-ER 4420 from Koobi Fora, Kenya, dated to 1.9 Ma and assigned to the Plio-Pleistocene colobine species Cercopithecoides williamsi, shows marked reduction of its first metacarpal relative to the medial metacarpals. Thus, KNM-ER 4420 is the first documented occurrence of cercopithecid pollical reduction in the fossil record. In the size of its first metacarpal relative to the medial metacarpals, C. williamsi is similar to extant African colobines, but different from cercopithecines, extant Asian colobines and the Late Miocene colobines Microcolobus and Mesopithecus. This feature clearly links the genus Cercopithecoides with the extant African colobine clade and makes it the first definitive African colobine in the fossil record. The postcranial adaptations to terrestriality in Cercopithecoides are most likely secondary, while ancestral colobinans (and colobines) were arboreal. Finally, the absence of any evidence for pollical reduction in Mesopithecus implies either independent thumb reduction in African and Asian colobines or multiple colobine dispersal events out of Africa. Based on the available evidence, we consider the first scenario more likely.     

A new species of Kolpochoerus (Mammalia: Suidae) from the Pliocene of Central Afar, Ethiopia: Its Taxonomy and Phylogenetic Relationships

Kolpochoerus (Mammalia: Suidae) is a suine genus represented by a number of species from Plio-Pleistocene sites in Africa. While the general trends in Kolpochoerus evolution are broadly known, gaps in the fossil record preclude an understanding of the details of its evolutionary tempo and mode. Here, we describe a new species, Kolpochoerus millensis, based on new fossil material from the Woranso-Mille and Gona sites in the Central Afar region of Ethiopia and dated to 3.5–3.8 million years ago (Ma). Third molars of K. millensis are metrically and morphologically intermediate between the early Pliocene K. deheinzelini and earliest late Pliocene K. afarensis. It appears that K. deheinzelini, K. millensis, and K. afarensis are temporally disjunct and phenetically distinguishable parts of a single evolving lineage. The recognition of these chronospecies provides additional evidence for anagenetic evolution. It demonstrates clearly the presence of transitional forms in the fossil record. The extensive and well-dated Kolpochoerus fossil record serves as one of the best documented examples of the occurrence of phyletic evolution. Moreover, K. millensis is one of the best biochronological markers in eastern Africa for the time between 3.5 and 3.8 Ma.     

An appraisal of the fossil record for the Cirolanidae (Malacostraca: Peracarida: Isopoda: Cymothoida), with a description of a new cirolanid isopod crustacean from the early Miocene of the Vienna Basin (Western Carpathians)

Abstract:  Isopod crustaceans are rarely preserved in the fossil record. Herein, an appraisal of the fossil record for the cirolanid isopods is presented. Five genera are briefly discussed, including Bathynomus, Brunnaega, Palaega, Pseudopalaega and Cirolana. A key for the cirolanid genera known to date from the fossil record is provided based mostly on pleotelson characters. From the early Miocene of the Slovak part of the Vienna Basin, Cirolana feldmanni sp. nov. is described being only the fifth fossil Cirolana species known to date and one of the few with preserved appendages. The material exhibits preservation suggesting biphasic moulting; the mode of preservation suggests a rather short time between shedding the posterior and anterior parts of the exoskeleton instead of hours or even days known in extant taxa. As no subsequent transport or physical disturbance was inferred, the specimens can be stated as in situ preservation. From the palaeoecological point of view, it is concluded that Cirolana feldmanni sp. nov. is the first unequivocal fossil deep‐water Cirolana as suggested by the accompanied fauna.     

一种厌氧真菌共培养甲烷菌株的分离及其甲烷生产特性解析

【背景】开发生物甲烷资源是减轻化石燃料供求紧张的有效措施,而秸秆类原料的预处理及甲烷生产方法需要不断创新,从而进一步满足可持续发展。厌氧真菌与甲烷菌共培养能够通过假根侵入及纤维降解酶双重预处理秸秆并生产甲烷,但目前全世界被报道的骆驼胃肠道来源的厌氧真菌分离培养物仅有1株。【目的】从新疆准噶尔双峰驼瘤胃内容物中分离出新型厌氧真菌和甲烷菌共培养物,研究其在降解秸秆并联合生产生物甲烷方面的应用潜力。【方法】采用Hungate滚管纯化技术将从骆驼胃肠道中分离的厌氧真菌和甲烷菌共培养,对其进行形态学及分子学鉴定,随后厌氧发酵5种底物(稻秸、芦苇、构树叶、苜蓿秆和草木樨),研究产甲烷量、降解效果及主要代谢产物等方面的特性。【结果】筛选到的共培养物中的厌氧真菌为Oontomyces sp. CR1,甲烷菌为Methanobrevibacter sp. CR1。其在降解稻秸时表现出最高的木聚糖酶酶活力(21.64 IU/mL)及甲烷产量(143.39 mL/g-DM),甲烷生产特性较分离自其他动物宿主的厌氧真菌共培养物更优。【结论】共培养厌氧真菌与甲烷菌菌株CR1是一种新型高效降解菌株资源,其在利用木质纤维素生物质生产生物甲烷方面具有良好的应用前景。     

A FURTHER CONTRIBUTION TO CLOSED-CONE PINE (OOCARPAE) HISTORY

A new record of a fossil Monterey pine (Pinus radiata D. Don) is recorded from rocks of the Plio-Pleistocene age, southern California, and the affinities of other presumed fossil closed-cone pines are revised. This has led to the recognition of two new pine species, Pinus storeyana Axelrod of subsect. Oocarpae and Pinus verdiana Axelrod of subsect. Ponderosae. Geologic evidence indicates that forerunners of the present California and Mexican species of Oocarpae were in proximity in Mexico during the Miocene. They were isolated following opening of the Gulf of California, the northward movement of Baja and Alta California on the San Andreas fault system, and the spread of desert climate. New populations of Pinus radiata developed during the Pliocene (5–2 million years) and later as environmental diversity increased. This also enabled Pinus remorala Mason and P. muricata D. Don, which the fossil record suggests were distinct into the Late Pleistocene, to hybridize in the new topographic-climatic Holocene environments.     

Dental microwear texture analysis and diet in the Dmanisi hominins

Reconstructions of foraging behavior and diet are central to our understanding of fossil hominin ecology and evolution. Current hypotheses for the evolution of the genus Homo invoke a change in foraging behavior to include higher quality foods. Recent microwear texture analyses of fossil hominin teeth have suggested that the evolution of Homo erectus may have been marked by a transition to a more variable diet. In this study, we used microwear texture analysis to examine the occlusal surface of 2 molars from Dmanisi, a 1.8 million year old fossil hominin site in the Republic of Georgia. The Dmanisi molars were characterized by a moderate degree of surface complexity (Asfc), low textural fill volume (Tfv), and a relatively low scale of maximum complexity (Smc), similar to specimens of early African H. erectus. While caution must be used in drawing conclusions from this small sample (n = 2), these results are consistent with continuity in diet as H. erectus expanded into Eurasia.