Iterative evolution in the diatom genus Rhizosolenia Ehrenberg

Sorhannus, U., Fenster, E. J., Hoffman, A. & Burckle, L. 1991 01 15: Iterative evolution in the diatom genus Rhizosolenia Ehrenberg. Lethaia , Vol. 24, pp. 39–44. Oslo. ISSN 0024–1164.
Two late Pliocene planktic diatom lineages, Rhizosolenia sigmoida Sörhannus and Rhizosolenia praebergonii Mukhina, originated consecutively from Rhizosolenia bergonii Peragallo in the eastern equatorial Pacific Ocean. This morphological iteration is closely associated with two successive shifts in the oxygen isotope record (¹⁸O/¹⁶O) at approximately 3.3 Ma and 2.9 Ma. suggesting that palcoenvironmental factors may have been directly or indirectly involved in initiating these events. Iterative evolution, pseudoextinction. diatom, oxygen isotope record .     

Meristic and morphometric variation in the lancet fish,Alepisaurus, with notes on the distribution of A. ferox and A. brevirostris

Abstract

Meristies and morphometries are reported for 81 specimens of Alepisaurus ferox and 31 of A. brevirostris, mostly from the Pacific Ocean. The holotype and topotype of A. ferox and two paratypes of A. brevirostris, all from the Atlantic Ocean, were also examined. For specimens longer than aJoout 500 mm SL, ferox is distinguishable from brevirostris by its relatively longer head and snout. In ferox the dorsal fin origin is a1bove or behind the hind margin of the operculum; in brevirostris it is in front. Paoific Ocean ferox have significantly fewer dorsal fin rays (mean 36.6) than Atlantic (40.5) and Indian Ocean (40.8) examples. In the Pacific, ferox can be distinguished from brevirostris by its fewer dorsal rays, but in the Atlantic and the Indian Ocean there is considerable overlap in dorsal ray counts. A. ferox is found world-wide, whereas brevirostris is not known from the North Pacific. The northernmost record of brevirostris in the Pacific is from 14°47′S.     

First record of Terpios fugax Duchassaing and Michelotti, 1864 (Demospongiae: Suberitidae) in the Eastern Pacific Ocean

ABSTRACT

The brightly blue shallow water species Terpios fugax Duchassaing and Michelotti, 1864 was originally described from the Caribbean and has been extensively recorded in the Atlantic Ocean, but rarely found in the Indian and Pacific Oceans. In the Pacific Ocean it has been only reported from Sulawesi, Indonesia and from the Caroline and Marshall Islands. Here we report the first record of Terpios in the Eastern Pacific, based on the presence of T. fugax at Caldera, Región de Atacama, northern Chile. Although this species may have been inadvertently introduced to the area by human activity, it should also be considered that the geographically distant populations of this sponge (from the Caribbean to the Eastern Pacific) may represent different species.     

Preliminary molecular analysis of Pelecanoides georgicus (Procellariiformes: Pelecanoididae) on Whenua Hou (Codfish Island): Implications for its taxonomic status

Abstract

Using sequences from the central and 3' regions of the mitchondrial small subunit (12S) ri‐bosomal RNA gene for six procellariiform species, this study confirms that the population of Pelecanoides georgicus on Whenua Hou (Codfish Island), New Zealand, is most closely related to P. georgicus from the southern Indian Ocean. The level of variation between sequences for this conserved gene suggests that the isolated Whenua Hou P. georgicus population split off from populations in the Indian Ocean several hundred thousand years ago. Although P. georgicus is globally numerous, the Whenua Hou population is endangered. As our preliminary sequence data suggest that the Whenua Hou population may have diverged from its parent population, it may deserve recognition in its own right.     

New records of two deep-sea eels collected from the Western Pacific Ocean based on COI and 16S rRNA genes

Background

Two deep-sea eels collected from the Western Pacific Ocean are described in this study. Based on their morphological characteristics, the two deep-sea eel specimens were assumed to belong to the cusk-eel family Ophidiidae and the cutthroat eel family Synaphobranchidae.

Methods and results

To accurately identify the species of the deep-sea eel specimens, we sequenced the mitochondrial genes (cytochrome c oxidase subunit I [COI] and 16S ribosomal RNA [16S rRNA]). Through molecular phylogenetic analysis based on mtDNA COI and 16S rRNA gene sequences, these species clustered with the genera Bassozetus and Synaphobranchus, suggesting that the deep-sea eel specimens collected are two species from the genera Bassozetus and Synaphobranchus in the Western Pacific Ocean, respectively.

Conclusions

This is the first study to report new records of the genera Bassozetus and Synaphobranchus from the Western Pacific Ocean based on COI and 16S rRNA genes

     

Five new species of the nanoflagellatePirsonia in the German Bight,North Sea,feeding on planktic diatoms

The structure, development, and host range of five newly detected species of the phagotrophic nanoflagellatePirsonia are described. They feed on planktic diatoms common in the North Sea:P. verrucosa sp. nov. (onRhizosolenia delicatula), P. formosa sp. nov. (onRhizosolenia setigera), P. diadema sp. nov. (onCoscinodiscus granii andC. wailesii), P. eucampiae (onEucampia zodiacus) andP. mucosa sp. nov. (onRhizosolenia shrubsolei). The occurrence of resting cysts inPirsonia guinardiae is reported. The impact ofPirsonia on phytoplankton communities is discussed.     

THE RECLASSIFICATION OF LESSONIA LAMINARIOIDES (LAMINARIALES,PHAEOPHYCEAE): PSEUDOLESSONIA GEN. NOV.1

A new genus, Pseudolessonia, is proposed for the kelp Lessonia laminarioides Postels et Ruprecht (Laminariales, Phaeophyceae), which occurs on the northwest side of the Sea of Okhotsk, in the northwest Pacific Ocean. Pseudolessonia is monotypic and differs from Lessonia in its short primary stipes and its corrugated, unilaterally arranged blades with entire margins. This species is transferred on the basis of morphology and plastid gene sequence comparisons. We determined psaA and rbcL gene sequences from 17 taxa of Pseudolessonia, Lessonia, and putative relatives. Analyses of individual and combined data sets resulted in congruent trees showing a clear separation of Pseudolessonia laminarioides from Lessonia, but suggesting its sister relationships with the clade of Nereocystis, Macrocystis, Pelagophycus, and Postelsia in the North Pacific Ocean. On the other hand, Lessonia species from the South Pacific Ocean formed a strongly supported clade. The results indicate that the basal splitting of the blade, which has been considered a diagnostic character for the family Lessoniaceae, is a result of convergent evolution.     

Bryophytes of St Helena,South Atlantic Ocean. 8. Lepidopilidium crispifolium,sp. nov. (Hookeriales,Pilotrichaceae)

Abstract

A new species of Lepidopilidium (Pilotrichaceae, Hookeriales), L. crispifolium, sp. nov. from St Helena, South Atlantic Ocean is described and illustrated.     

Revision of genus Melamphaes (Melamphaidae). II. Multi-Raker species: M. polylepis, M. falsidicus sp. nova, M. pachystomus sp. nova, M. macrocephalus, M. leprus

The second part of the publication is devoted to the Melamphaes species (family Melamphaidae), which are characterized by 20 and more rakers on the first gill arch, by seven soft rays in the ventral fin, by absence of a temporal spine, by 14–15 rays in the pectoral fin, and by 11 abdominal vertebrae. M. polylepis is characterized by circumtropical range (Atlantic Ocean, Indian Ocean, western and central Pacific Ocean). Newly described species M. falsidicus is described from the northern Atlantic Ocean, where it was sampled between 34°N and 58°N. Before, this species was defined as M. microps. Another newly described species, M. pachystomus, is described along the Peruvian Coast. M. macrocephalus is redescribed. This species inhabits the eastern tropical Pacific Ocean (approximately between 30°N and 23°S). One of the studied specimens of M. macrocephalus was characterized by larger body size (SL = 128 mm) than was described before for this species. M. leprus is known currently by single findings from the eastern tropical Atlantic Ocean (between 11°N and 4°S). This species was also found in the samples obtain in the Gulf of Guinea.     

Holocene thecideide brachiopods from the north‐western Pacific Ocean: Systematics,life habits and ontogeny

Abstract

A new species of the lacazelline brachiopod genus Ospreyella is described from shallow cryptic habitats in Palau, western Caroline Islands and Arnd Atoll, Pohnpei, eastern Caroline Islands, north‐western Pacific Ocean. This new taxon, here named Ospreyella palauensis, and representing the third discovery of a species of Ospreyella from the Indo‐Pacific region, is compared with the other two recently described extant species of the genus, O. depressa Lüter from the Great Barrier Reef, Australia, and O. maldiviana Logan from the Maldive Islands, northern Indian Ocean. An ontogenetic sequence is described for the new species and compared with those previously described for other Holocene lacazellines. Additionally, a study of ontogenetic stages in Thecidellina congregata from Saipan in the Northern Mariana Islands shows early‐stage similarities to those of the new species and other lacazellines. These observations on development in extant forms provide important analogies for comparison with ontogenetic stages in ancestral fossil forms and information which may be useful in reconstructing thecideide phylogenetic history.     

Diatoms in northeast Pacific surface sediments as paleoceanographic proxies

Fossil diatom total abundances (# valves/g) in 54 surface-sediment samples from the northeast (NE) Pacific Ocean reflect the position of high primary production associated with coastal upwelling and that possible biases associated with dilution or dissolution are small. Diatom species assemblages, defined by Q-mode factor analysis in 30 samples with abundant diatoms, are related to modern oceanographic properties. Five statistical assemblages, given by five specific diatom species and/or groups, are related to upwelling (Chaetoceros spores), subtropical (Thalassionema nitzschioides), subarctic (Rhizosolenia hebetata), transitional (Neodenticula seminae) and freshwater (freshwater diatoms) ecological environments. These factors are significantly correlated with primary productivity, temperature, nutrient concentrations and salinity, although the strongest relationship is that between diatom assemblages and productivity. However, it is not possible to distinguish between coastal and open-ocean (curl-driven) upwelling based on Chaetoceros spores relative percentages by themselves or on the floral factors.     

Marine Fungi Aspergillus sydowii and Trichoderma sp. Catalyze the Hydrolysis of Benzyl Glycidyl Ether

Whole cells of the marine fungi Aspergillus sydowii Gc12, Penicillium raistrickii Ce16, P. miczynskii Gc5, and Trichoderma sp. Gc1, isolated from marine sponges of the South Atlantic Ocean (Brazil), have been screened for the enzymatic resolution of (±)-2-(benzyloxymethyl)oxirane (benzyl glycidyl ether; 1). Whole cells of A. sydowii Gc12 catalyzed the enzymatic hydrolysis of (R,S)-1 to yield (R)-1 with an enantiomeric excess (ee) of 24–46% and 3-(benzyloxy)propane-1,2-diol (2) with ee values <10%. In contrast, whole cells of Trichoderma sp. Gc1 afforded (S)-1 with ee values up to 60% and yields up to 39%, together with (R)-2 in 25% yield and an ee of 32%. This is the first published example of the hydrolysis of 1 by whole cells of marine fungi isolated from the South Atlantic Ocean. The hydrolases from the two studied fungi exhibited complementary regioselectivity in opening the epoxide ring of racemic 1, with those of A. sydowii Gc12 showing an (S) preference and those of Trichoderma sp. Gc1 presenting an (R) preference for the substrate.     

一株太平洋表层海水来源阿拉伯海假交替单胞菌N1230-9的全基因组测序及比较基因组学分析

【目的】阐述阿拉伯海假交替单胞菌(Pseudoalteromonas arabiensis)的分子进化与生态适应策略。【方法】借助Illumina HiSeq X Ten和Oxford Nanopore PromethION测序平台对一株分离自太平洋表层海水的菌株Pseudoalteromonas arabiensis N1230-9进行全基因组测序,利用相关生物信息学分析软件对原始数据进行组装和基因组注释,并与一株分离自深海沉积物环境的模式菌株Pseudoalteromonas arabiensis JCM 17292进行比较基因组分析。【结果】菌株N1230-9基因组由2条染色体组成,基因组大小为4 627 470 bp,G+C含量为40.85%,共编码4 202个蛋白。功能基因注释结果显示,菌株N1230-9具有适应海洋环境的多种类型功能基因,包括重金属抗性基因、多种铁离子摄取系统编码基因、多种噬菌体防御系统编码基因、种类丰富的水解酶编码基因、多种碳水化合物代谢相关基因,以及数量众多的二元信号传导系统编码基因。通过比较基因组分析发现,菌株N1230-9和菌株JCM 17292拥有适应不同生态位的特有基因,这些基因主要涉及血红素摄取、重金属抗性、噬菌体防御、二元信号系统传导和横向基因水平转移。【结论】来自表层海水的菌株P. arabiensis N1230-9已演化出了适应其生态位的特有基因。     

植物乳杆菌天然质粒系统进化和起源

【目的】为了探索植物乳杆菌天然质粒系统进化关系和起源。【方法】本文利用复制起始蛋白(replication initiation protein,Rep)系统进化树、基因组共线性、基因组GC含量和宿主范围分析方法,对植物乳杆菌75个天然质粒的系统进化关系和起源进行了详细和多角度的分析。【结果】首先,Rep系统进化树和基因组共线性分析结果均表明,植物乳杆菌所有天然质粒可以划分为6个进化关系亲密的家族、2个进化形态特殊的杂合质粒和1个独立进化质粒pLP2140。杂合质粒pMRI5.2、pLP12-1分别由家族1-2和5-6质粒融合形成,因此植物乳杆菌质粒可能起源于7个祖先。其次,基因组共线性分析可以将6个家族质粒进一步划分为17个进化关系更近的亚家族类群,并清晰、有效地揭示类群内质粒之间的系统进化关系。最后,基因组GC含量和宿主范围分析为植物乳杆菌质粒的系统进化关系和起源提供了进一步的证据。【结论】因此上述研究可以准确、有效地揭示植物乳杆菌天然质粒的系统进化关系和起源,这对植物乳杆菌天然质粒系统进化和起源的了解和研究具有重要的参考价值。通过Rep系统进化树和基因组共线性两种分析方法优缺点的比较和组合,我们提出了一种更加有效的研究思路和分析方法,同时这种方法很可能适用于所有细菌天然质粒,因此对于天然质粒进化和起源研究具有普遍的方法学意义。     

A new Antarctic association: the case of the hydroid Sarsia medelae (new sp.) associated with gorgonians

Sarsia medelae sp. nov. is described and illustrated from material collected in the Weddell Sea during the R/V Polarstern cruises ANT XVII/3 (April 2000) and in the Ross Sea during the R/V Italica cruise XIX (March 2004). The specimens have always been observed in association with several gorgonians of genera Thouarella sp., Primnoisis sp., and Notisis sp. The polyps of Sarsia medelae are considered as mesobiont of the gorgonian host with a non-parasitic relationship. It is the first time that this kind of association, which is so far only known from the Indian and Pacific Ocean, is reported in the Southern Ocean. This finding is discussed in the framework of the hypothesis that a part of Antarctic fauna has its origin in species dating back to before the Cretaceous period, because this kind of association between a hydroid and a gorgonian host being only known in the actual Antarctic shelf and in regions belonging to the previous Thethys areas.An erratum to this article can be found at     

Bryophytes of St Helena,South Atlantic Ocean. 4. Kurzia nemoides (Hook.f. et Taylor) Grolle and Lepidozia africana Steph. (Jungermanniales,Lepidoziaceae) described from the island

Abstract

The little known species Kurzia nemoides (Hook.f. et Taylor) Grolle and Lepidozia africana Steph. (Lepidoziaceae) are described and illustrated from St Helena, South Atlantic Ocean. Details are given of their distributions on the island, and the differences between related species are discussed. This is the first report of the genus Lepidozia from St Helena.     

L'evoluzione Delle Piante Vascolari dal Terziario ad Oggi

Abstract

The evolution of vascular plants from tertiary up to date. — The Author explains some modern views on the evolution of plants derived chiefly by the latest progresses in biosystematics. The principal mechanisms of evolution are analysed, particularly the orthogenesis is discussed: it seems supported by some important evidences. The introduction of modern research methods in taxonomy allowed to recognise a great number of new taxa, but we are still far from a complete knowledge even of the European flora. So we can expect in future further interesting results.     

基于数据库分析不同类型生境中厌氧氨氧化细菌的多样性分布特征

【目的】厌氧氨氧化过程是一种能在厌氧条件下氧化NH4+同时还原NO2–或者NO3–生成N2的过程,是氮素循环过程的重要途径之一。厌氧氨氧化过程由厌氧氨氧化细菌催化完成,目前通过分子生物学的手段已证实了厌氧氨氧化细菌存在于多种类型的生境中,本文对厌氧氨氧化细菌在不同类型生境中的多样性分布规律进行了系统分析。【方法】基于NCBI数据库中厌氧氨氧化细菌的16SrRNA基因序列,利用Mothur分析平台系统分析了厌氧氨氧化细菌在不同生境中的多样性分布规律和特征。【结果】分析表明,海洋环境中Ca. Scalindua属的厌氧氨氧化细菌占绝对主导;淡水和农业土壤中Ca. Brocadia属的厌氧氨氧化细菌占优势;工程系统中普遍存在Ca. Brocadia和Ca. Kuenenia属的厌氧氨氧化细菌;而湿地和河口环境中厌氧氨氧化细菌多样性最高,Ca. Scalindua、Ca. Brocadia和Ca. Kuenenia属的厌氧氨氧化细菌均有较高的相对丰度,显示出了陆地与海洋交汇的显著特征。【结论】本研究系统展示了不同的生境中厌氧氨氧化细菌的多样性群落结构生境分布特征,表明环境特征差异直接影响了厌氧氨氧化细菌的种群分布和系统演化。     

Distribution of the cyanobacterium Richelia intracellularis as an epiphyte of the diatom Chaetoceros compressus in the western Pacific Ocean

The few available records on the association of the diazotrophheterocystous cyanobacterium Richelia intracellularis epiphyticallywith Chaetoceros compressus are restricted to the Indian andwestern Pacific Oceans, whereas the association of R. intracellularisas an endosymbiont in other diatoms is ubiquitous in warm oceans.From ten cruises in the western Pacific Ocean, the Richelia-Chaetocerosconsortia were exclusively observed in the periphery of thegeographic proliferations of C. compressus, coinciding withthe overlapping area of the populations of asymbiotic C. compressusand R. intracellularis as an endosymbiont in Rhizosolenia clevei.     

Occurrence of Diatom – Diazotrophic association in the coastal surface waters of south Andaman,India

The heterocystous cyanobacterium Richelia intracellularis Schmidt 1901 is well known for its capability to fix atmospheric nitrogen (N₂) in oligotrophic waters. Symbiotic associations of Richelia intracellularis with the diatoms Rhizosolenia hebetata, Rhizosolenia clevei, Rhizosolenia cylindrus and Hemiaulus membranaceus is reported for the first time from the coastal waters of South Andaman, India. In these the symbiotic associations, variations were observed in the number of vegetative cells, trichomes, and the shape of the heterocysts. The highest number of trichomes was observed in Rhizosolenia clevei (14) per host. The trichomes consisted of 9–10 vegetative cells and a spherical heterocyst that was orientiated toward one end of the host diatom cell. In Rhizosolenia hebetata, three trichomes of Richelia intracellularis were present, one trichome at one end with 7–8 vegetative cells and two trichomes at the other end. In Rhizosolenia cylindrus, two trichomes of Richelia were observed, with a spherical heterocyst and 5–6 vegetative cells. An association between Hemiaulus membranaceus and Richelia intracellularis was also observed but with less frequency. Trichomes were observed in the centre of the diatom. By using the cell-specific rates, the amount of new N provided by the Diatom-Diazotrophic Associations was estimated. This is the first record of a symbiotic association of Richelia in diatoms from Andaman coastal waters.