Synthesis of Some Novel 6‐Benzyl(or Substituted Benzyl)‐2‐β‐d‐Glucopyranosyl‐1,2,4‐Triazolo[4,3‐b][1,2,4]Triazines as Potential Antimicrobial Chemotherapeutics

Glucosidation of the new 8‐amino‐6‐benzyl(or substituted benzyl)‐2,8‐dihydro‐1,2,4‐triazolo[4,3‐b][1,2,4]triazin‐7(3H)‐ones (3a–d) with 2,3,4,6‐tetra‐O‐acetyl‐α‐d‐glucopyranosyl bromide 4 gave the corresponding N‐glucosides 5a–d. Chemical transformations leading to new functionalities have also been achieved to give compounds 7–12. Antimicrobial activity of compounds 5a–c against Aspergillus fumigatus, Penicillium italicum, Syncephalastrum racemosum, Candida albicans, Staphylococcus aureus, Pseudomonas aeruginosa, Bacillus subtilis, Escherichia coli is described.     

The effects of quantity and quality of prey on population fluctuations in three seabird species

Capsule Population sizes of Common Guillemots Uria aalge, Razorbills Alca torda and Lesser Black‐backed Gulls Larus fuscus were associated with prey abundance but not prey quality.

Aims To examine how the abundance and quality of prey fish affects seabird population size and to test the ‘junk‐food’ or nutritional stress hypothesis.

Methods Analysis of long‐term seabird population size data and Sprat Sprattus sprattus biomass and age‐related weight data using a correlative approach.

Results De‐trended seabird and Sprat population data showed that the abundance of Sprat, the main prey species, was associated with the abundance of seabirds, while no effect of age‐related size of prey on seabird population size was found.

Conclusion As the Sprat population increased so did the seabird populations, regardless of decreases in ‘quality’ of Sprats, implying that more prey fish simply seem to mean more food in this marine ecosystem. No support for the ‘junk‐food’ hypothesis was found and the results contradict suggestions from earlier studies that prey quality is important to top‐predators in the Baltic Sea.     

First Synthesis of Double Headed 1,3,4‐Oxadiazino[6,5‐b]indole Acyclo C‐Nucleosides

Condensation of 1,3‐dihydro‐2,3‐dioxo‐2H‐indoles (1a–c) with galactaric acid bis hydrazide (2) gave the corresponding galactaric acid bis[2‐(1,2‐dihydro‐2‐oxo‐3H‐indol‐3‐ylidene)hydrazides] (3a–c). Acetylation of the latter compounds with acetic anhydride in the presence of pyridine at ambient temperature gave the 2,3,4,5‐tetra‐O‐acetylgalactaric acid bis[2‐(1,2‐dihydro‐2‐oxo‐1‐substituted‐3H‐indol‐3‐ylidene)hydrazides] (4b–d). Heterocyclization of the tetra‐O‐acetates 4b–d by heating with thionyl chloride afforded the double headed acyclo C‐nucleosides: 1,2,3,4‐tetra‐O‐acetyl‐1,4‐bis{9‐substituted‐1,3,4‐oxadiazino[6,5‐b]indol‐2‐yl‐1‐ium}‐galacto‐tetritol dichlorides (5b–d). Structures of the prepared compounds were elucidated from their spectral properties.     

Regioselective Synthesis of Indazole N 1‐ and N 2‐(β‐d‐Ribonucleosides)

The regioselective synthesis of 4‐nitroindazole N ¹‐ and N ²‐(β‐d‐ribonucleosides) (8, 9, 1b and 2b) is described. The N ¹‐regioisomers are formed under thermodynamic control of the glycosylation reaction [fusion reaction or Silyl Hilbert‐Johnson glycosylation for 48 h (66%)], while the kinetic control (Silyl Hilbert‐Johnson glycosylation for 5 h) afforded only the N ²‐isomer (64%). The structures of the nucleosides 1b and 2b were assigned by single crystal X‐ray analyses. The 4‐amino‐N ¹‐(β‐d‐ribofuranosyl)‐1H‐indazole (3b) was obtained from the nitro nucleoside 1b by catalytic hydrogenation. Compound 3b shows fluorescence while the 4‐nitroindazole nucleosides 1b and 2b do not possess this property.     

An Efficient Route to Novel 4,5‐Di‐ and 2,4,5‐Tri Substituted Imidazoles from Imidazo[1,5‐a]‐1,3,5‐triazine (5,8‐Diaza‐7,9‐dideazapurine) Derivatives

Two new types of imidazole derivatives: N‐(2‐R¹‐5‐R²‐1H‐imidazol‐4‐yl) thioureas 7a–g and N‐(2‐R¹‐5‐R²‐1H‐imidazol‐4‐yl) formamides 8b,c,g were obtained in high yields by the hydrolytic degradation of 6‐R¹‐8‐R²‐2‐thioxo‐2,3‐dihydroimidazo[1,5‐a]‐1,3,5‐triazin‐4(1H)‐ones 5a–g and 6‐R¹‐8‐R²‐imidazo[1,5‐a]‐1,3,5‐triazin‐4(3H)‐ones 6b,c,d, respectively. The tautomeric preferences of the new imidazoles were determined.     

Synthesis, 18F‐Radiolabelling and Biological Evaluations of C‐6 Alkylated Pyrimidine Nucleoside Analogues

Synthesis of pyrimidine derivatives with a side‐chain attached to the C‐6 of pyrimidine ring (6–14) is reported. Target compounds 8 and 12 were subjected to in vitro phosphorylation tests, determination of their binding affinities to herpes simplex virus (HSV‐1) thymidine kinase (TK) and catalytic turnover constants. Fluorinated pyrimidine derivative 12 (40 µM) exhibited better binding affinity for HSV‐1 TK than acyclovir (ACV, 170 µM) and ganciclovir (GCV, 48 µM). Catalytic turnover constant (k _cat) of 12 (0.08 s^? 1) was close to the k _cat values of ACV (0.10 s^? 1) and GCV (0.10 s^? 1). Furthermore, compounds 8 and 12 showed no cytotoxic effects in HSV‐1 TK‐transduced and non‐transduced cell lines. Besides, compounds 8 and 12 did not exhibit antiviral or cytostatic activities against several viruses and malignant tumor cell lines that were evaluated. The new fluorinated pyrimidine derivative 16 that is phosphorylated by HSV‐1 TK could be developed as non‐toxic PET‐tracer molecule. Thus, ¹⁸F labelling of the precursor 14 was performed by nucleophilic substitution using [¹⁸F] tetrabutylammonium fluoride as the fluorinating reagent.     

Effective Anomerisation of 2′‐Deoxyadenosine Derivatives During Disaccharide Nucleoside Synthesis

The formation of a disaccharide nucleoside (11) by O3′‐glycosylation of 5′‐O‐protected 2′‐deoxyadenosine or its N ⁶‐benzoylated derivative has been observed to be accompanied by anomerisation to the corresponding α‐anomeric product (12). The latter reaction can be explained by instability of the N‐glycosidic bond of purine 2′‐deoxynucleosides in the presence of Lewis acids. An independent study on the anomerisation of partly blocked 2′‐deoxyadenosine has been carried out. Additionally, transglycosylation has been utilized in the synthesis of 3′‐O‐β‐d‐ribofuranosyl‐2′‐deoxyadenosines and its α‐anomer.     

Using repeated winter surveys to estimate changes in abundance of seed‐eating passerines

Capsule Winter Atlas surveys of 16 species on lowland farmland revealed significant changes in count for four species.

Aims To estimate changes in abundance between the early 1980s and late 1990s, of wintering seed‐eating passerines, in ‘core’ areas of lowland Scotland.

Methods Ninety‐five Scottish 10‐km squares were selected that held high numbers of seed‐eating passerines in the 1981–84 Atlas of Wintering Birds in Britain and Ireland. The same survey methods were used to resurvey these in winters 1997/98 and 1998/99, and visits were matched as closely as possible for duration and date. Analyses compared counts between the two survey periods for 16 species of seed‐eating passerines and, for 12 of these, differences were also compared with national breeding population trend information for the same period.

Results Mean Corn Bunting Emberiza calandra count per visit declined by 62% between the early 1980s and late 1990s, a difference which was statistically significant (P = 0.026). Significant increases were recorded for Yellowhammer Emberiza citrinella (up 62%), Common Linnet Carduelis cannabina (up 3.4‐fold) and European Goldfinch Carduelis carduelis (up 13‐fold). For 12 species for which national breeding population trend data were available, trends were weakly positively correlated (r _s = 0.43, P = 0.08) with those from our results, but several species trends were more positive in our study. This difference was particularly marked for Eurasian Tree Sparrow Passer montanus, Goldfinch and Linnet.

Conclusion Repeating Winter Atlas surveys offers a useful additional method for assessing population trends. They are particularly useful in a region with low observer coverage and for species that are poorly covered by long‐term bird monitoring data sets. It would be valuable to validate this approach at a regional level, especially in a region for which detailed long‐term bird monitoring data are available.     

Improved and Reliable Synthesis of 3′‐Azido‐2′,3′‐dideoxyguanosine Derivatives

An improved synthesis of N²‐protected‐3′‐azido‐2′,3′‐dideoxyguanosine 20 and 23 is described. Deoxygenation of 2′‐O‐alkyl (and/or aryl) sulfonyl‐5′‐dimethoxytritylguanosine coupled with [1,2]‐hydride shift rearrangement gave protected 9‐(2‐deoxy‐threo‐pentofuranosyl)guanines ( 10 , 12 and 16 ). This rearrangement was accomplished in high yield with a high degree of stereoselectivity using lithium triisobutylborohydride (l‐Selectride®). Compounds 10 , 12 and 16 were transformed into 3′‐O‐mesylates ( 18 and 21 ), which can be used for 3′‐substitution. The 3′‐azido nucleosides were obtained by treatment of 18 and 21 with lithium azide. This procedure is reproducible with a good overall yield.     

Nucleosides. IX. Synthesis of Purine N 3,5′‐Cyclonucleosides and N 3,5′‐Cyclo‐2′,3′‐seconucleosides via Mitsunobu Reaction as TIBO‐like Derivatives

The Mitsunobu reaction was applied to prepare, in one step, purine N ³,5′‐cyclonucleosides 10a–d. A subsequent ring opening in the ribose moiety of the resultant N ³,5′‐nucleosides by sodium periodate led to the corresponding N ³,5′‐cyclo‐2′,3′‐seconucleosides. These products consist of 5‐, 6‐, and 7‐membered tricyclic system which is the basic skeleton of TIBO derivatives, known antiviral agents.     

Synthesis and Antiviral Activities of New Pyrazolo[4,3‐c]quinolin‐3‐ones and Their Ribonucleoside Derivatives

Several new pyrazolo[4,3‐c]quinolin‐3‐one ribonucleosides (5a–g) and their corresponding heterocycle moieties (3a–g) were synthesized and evaluated against vaccinia virus (VV) and herpes simplex virus type 1 (HSV‐1). The derivatives 3c and 3d showed modest inhibitory activity against vaccinia virus reaching 70% at a concentration of 100 µM. All heterocyclic compounds (3a–f) showed a modest inhibition against HSV‐1, reaching the maximal inhibitory effect around 20–30%. The antiviral effects of most of the pyrazolo[4,3‐c]quinolin‐3‐one ribonucleosides (5a–f) on VV and HSV were not impressive.     

Direct Haplotype‐Specific DNA Sequencing

Abstract

Determining haplotype‐specific DNA sequence information is very important in a wide range of research fields. However, no simple and robust approaches are currently available for determining haplotype‐specific sequence information. We have addressed this problem by developing a very simple and robust haplotype‐specific sequencing approach. We utilise the fact that DNA sequencing polymerases are sensitive to 3′end mismatches in the sequencing primer. By using two sequencing primers with 3′end corresponding to the two alleles in a given SNP locus, we are able to obtain allele‐specific DNA sequences from both alleles.

We evaluated this direct haplotype‐specific approach by determining haplotypes within the intron 2 sequence of the fructan‐6‐fructosyltransferase (6‐ft) gene in Lolium perenne L. We obtained reliable haplotype‐specific sequences for all primers and genotypes evaluated. We conclude that the haplotype‐specific sequencing is robust, and that the approach has a potentially very wide application range for any diploid organism.     

Second Generation of cycloSal‐Pronucleotides with Esterase‐Cleavable Sites: The ”Lock‐In”‐Concept

A conceptual extension of the cycloSal‐pronucleotide approach is presented. The characteristic feature of the new cycloSal‐derivatives of the anti‐HIV active nucleoside analogue d4T 1 is the incorporation of an enzymatically cleavable carboxylic ester moiety with the intention to trap the triesters inside cells (”lock‐in”‐concept). CycloSal‐triesters bearing different ester groups in the 3‐or 5‐position of the cycloSal‐moiety are described. Surprisingly, only acetyl‐and levulinyl esters are cleaved readily in CEM cell extracts while alkyl esters were found to be stable. Nevertheless, in in‐vitro anti‐HIV assays most of the compounds achieve the thymidine–kinase bypass, thus proving that they act at least as nucleotide delivery systems.     

Effect of climatic change on the duration of the breeding season in three European thrushes

Capsule Evidence for extension of breeding seasons in Song Thrushes and Blackbirds (multiple‐brooded species) and shortening in Fieldfares (a single‐brooded species).

Aims To analyse breeding data from central Europe during 1964–2006 in relation to climatic conditions operating at breeding and wintering grounds, and to compare breeding phenology in urban and rural habitats.

Methods Using chick ringing data we evaluated long‐term changes in breeding phenology of Fieldfares Turdus pilaris, Song Thrushes T. philomelos and Common Blackbirds T. merula. Changes in phenology were analysed for the 5th percentile, median, 95th percentile, inter‐quantile range (IQR) and brood size.

Results All thrushes showed consistent trends towards earlier onset of breeding. However, there was a contrasting pattern in the later phenological characteristics (median, 95th percentile and IQR) that were associated with single‐ versus multiple‐brooded species. The single‐brooded Fieldfares revealed an advancing trend in all phenological phases, which caused shortening of its breeding period. In contrast, the multiple‐brooded Song Thrushes and Blackbirds delayed both medians and the 95th percentiles of breeding dates leading to extension of their breeding seasons. Temperatures at both wintering and breeding grounds were generally negatively associated with the onset of breeding. Urban birds bred significantly earlier than their rural conspecifics, but brood sizes did not differ.

Conclusion Multiple‐brooded species may respond differently to increasing spring temperatures than single‐brooded species.     

Synthesis and Antiviral Activity of Novel Fluorinated 2′,3′‐Dideoxynucleosides

A series of 5‐(trifluoroethoxymethyl)‐2′,3′‐dideoxyuridines and 5‐[bis(trifluoroethoxy)‐methyl]‐2′,3′‐dideoxyuridines have been prepared and screened for antiviral activity. The conformations of these compounds are discussed on the bases of NOE studies and the MO calculations. Modelling and NOE studies suggest both syn‐ and anti conformations for these 5‐(2,2,2‐trifluoroethoxymethyl)‐ and 5‐[bis(2,2,2‐trifluoroethoxy)‐methyl]‐ derivatives. The NOE parameters are also suggested to be more attributable to the nature of the fluorine atom than to structural or conformational changes. Compounds 17, 26 and 30 showed some activity in anti‐HIV‐1 and anti‐HIV‐2 assays, but the compounds were devoid of activity against HSV and human rhinovirus. The compounds tested exhibited low cytotoxicity and were inactive against a bank of cancer cells in vitro.     

A Versatile Synthesis of Dihydropyrimidinone C‐Nucleosides

A versatile synthesis of N‐substituted dihydropyrimidinone C‐nucleosides (20–29) is described. Glycosyl amino esters (3–9), obtained by reductive alkylation of glycosyl amino esters 1 and 2, on condensation with different isocyanates afforded respective ureido derivatives (10–19) in good to quantitative yields. The latter on cyclative amidation with a combination of DBU/TBAB (tetrabutylammonium bromide)/4Å molecular sieve gave the corresponding nucleosides (20–29) in good yields.     

Festuca rohlenae (Poaceae): A neglected taxon of the Montenegro

Abstract

Festuca porcii var. angustifolia is raised to the rank of a species under the new name F. rohlenae. It is an endemic of SE Dinarides in Montenegro, and it is most similar to the Carpathian F. porcii. Both species have the “broad‐leaved syndrome” and exhibit an intermediacy between “fine‐leaved” and “broad‐leaved” fescues. The comparative morpho‐anatomical data and the distribution map as well as basic ecological information of F. rohlenae are herewith presented.     

The New Zealand genus Metablax (Coleoptera: Elateridae) and its relationship to the Campsosterninae

The genus Metablax is endemic to New Zealand. The fauna falls into 2 distinct species‐groups, here designated the acutipennis‐group (acutipennis, brouni) and the approximans‐group (approximans, gourlayi n.sp., cinctiger). All taxa are described and illustrated, and a key is given for their separation. A typical Metablax larva is described and illustrated. The systematic position of the genus is discussed in relation to the Neotropical Campsosterninae, and on the basis of both adult and larval characters Metablax is here assigned to subfamily Campsosterninae.     

Site selection and behavior of sponge and bivalve borers in shells of the cretaceous oysters exogyra cancellata and pycnodonte mutabilis from delaware,U.S.A

In shells of the oysters Exogyra cancellata and Pycnodonte mutabilis from the Mount Laurel and Marshalltown Formations (Campanian‐Maestrichtian), three‐quarters of all valves bear sponge borings (Entobia isp.) borings and 30% have borings of a lithophagid bivalve (Gastrochaenolites isp.). Non‐random distributions of these euendoliths, documented in this paper, may in part be accounted for by differential survival of sponge and lithophagid larvae and spat in varying circumstances. In addition, exterior shell architectures and post‐mortem orientations of shells are inferred to have prompted active geophobic (antigravity), rugophilic (groove‐seeking), and rheophilic (current‐seeking) behavior that enhanced survivorship of the settling larvae.     

Resistance of biofilms containing alginate‐producing bacteria to disintegration by an alginate degrading enzyme (Algl)

Pure culture biofilms of Pseudomonas aeruginosa (strains 8830 and ATCC 700829) and mixed population biofilms composed of Pseudomonas aeruginosa (ATCC 700829), Pseudomonas fluorescens (ATCC 700830), and Klebsiellapneumoniae (ATCC 700831) were treated with an alginate‐degrading enzyme (AlgL). The enzyme effectively depolymerized the mannuronic acid rich (92%), partially O‐acetylated bacterial alginate produced by P. aeruginosa (8830), both in dilute solution and in a gel‐like, concentrated state. However, both biofilms were unaffected by the presence of the enzyme. These findings suggest either that bacterial alginates do not contribute significantly to the cohesiveness of biofilms or that the alginate is protected from enzymatic degradation in biofilms.