Clavispora,a new yeast genus of the Saccharomycetales

In Candida lusitaniae van Uden et do Carmo-Sousa (1959), strains of opposite sex have been found. Cells of the opposite mating types conjugate and form asci with one to four clavate spores. These are easily liberated from the ascus. The type strain of Candida obtusa (Dietrichson) van Uden et do Carmo-Sousa ex van Uden et Buckley (1970) also produces ascospores after mating with one of the strains of Candida lusitaniae. As clavate ascospores are unknow in yeasts, a new genus, Clavispora, is proposed with Clavispora lusitaniae spec. nov. as type species.     

The yeast genus Yarrowia gen. nov.

The ascigerous teleomorph of Candida lipolytica (Harrison) Diddens et Lodder, previously classified as Endomycopsis lipolytica Wickerham et al. and as Saccharomycopsis lipolytica (Wickerham et al.) Yarrow, has been assigned to the new genus Yarrowia. Yarrowia lipolytica (Wickerham et al.) comb. nov. is the type species for the genus.The remaining species of Saccharomycopsis are revised.     

Mycogloea nipponica - the first known teleomorph in the heterobasidiomycetous yeast genus Kurtzmanomyces

A culture was obtained from a spore print of a basidiocarp of Mycogloea nipponica collected in Taiwan. A yeast stage and basidia identical to those of M. nipponica developed in laboratory media. The Taiwanese specimen of M. nipponica and its yeast anamorph were characterised in the present study. Comparative morphological, molecular, and ultrastructural studies indicated that the yeast stage can be assigned to the genus Kurtzmanomyces. The revealed connection between the sexual species Mycogloea nipponica and the asexual genus Kurtzmanomyces demonstrates the importance of anamorphic characteristics in the modern systematics of heterobasidiomycetous fungi. This revised version was published online in August 2006 with corrections to the Cover Date.     

Systematics of the species of the yeast genus Saccharomyces associated with the fermentation industry

Summary The so-called wine yeasts Saccharomyces cerevisiae, S. chevalieri, S. bayanus, S. italicus and S. uvarum are characterized by high ethanol tolerance and fermentation velocity. They are ecologically related, being predominantly associated with grape must and wine, and are taxonomically indistinguishable. The only significant physiological differences are between the ability to ferment certain sugars. A taxonomic revision of more than 1,000 strains isolated during the past 50 years and belonging to the above species showed extreme instability in the ability to ferment different sugars. The relationships between these yeasts were examined for DNA base composition and DNA-DNA reassociation. The G+C ranged from 37.6% to 39.0% while optical reassociation experiments defined a first group of species (Saccharomyces cerevisiae, S. chevalieri and S. italicus) exhibiting high base sequence complementarity (>90%). S. bayanus and S. uvarum also showed a high degree of relatedness. Low homology values (30%) indicate that the two groups of species are not closely related. While it is proposed to combine S. cerevisiae, S. chevalieri and S. italicus into one single species under the oldest epithet Saccharomyces cerevisiae, a study of a larger number of strains is recommended before considering the taxonomic position of S. bayanus and S. uvarum.     

Oxylipins and ascospore morphology in the ascomycetous yeast genus Dipodascus

Immunofluorescence microscopy was used to assess members of the yeast genus Dipodascus for the presence of 3-hydroxy oxylipins. Fluorescence was associated with the aggregating ascospores in all species tested, thus suggesting the association of 3-hydroxy oxylipins with these cells, especially the surrounding slime sheaths. An ultrastructural study of the ascospores revealed sheaths with indentations, probably caused by the close packing of the ascospores to form clusters. In addition, an increase in the neutral and glycolipid fractions as well as a decrease in the phospholipid fraction during ascosporogenesis in D. ambrosiae was found. This revised version was published online in June 2006 with corrections to the Cover Date.     

Ultrastructure of the ascospores of the new yeast genus Sporopachydermia Rodrigues de Miranda

Development of the ascospores of Sporopachydermia lactativora and S. cereana was studied in ultrathin sections. The spores have a very thick wall consisting of a thin dark outer layer and a double light inner layer the outer part of which is very wide and often irregular. During germination, this part disappears, the outer dark layer breaks up and the inner part of the light layer remains around the protoplast during development to a vegetative cell.This investigation was supported by the Netherlands Organization for the Advancement of Pure Research (Z.W.O.).     

The yeast genus Ambrosiozyma gen. nov. (ascomycetes)

Five ascogenous, filamentous yeast species characterized by the formation of septal pore bodies and a primary association with ambrosia beetles, are transferred to the new genusAmbrosiozyma. A key to the species of the genusAmbrosiozyma is given.

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Zusammenfassung Fünf ascogene, mycelbildende Hefenarten, die durch die Bildung von septalen Porenkörperchen und eine primäre Association mit Ambrosia Käfern charakterisiert sind, wurden in die neue GattungAmbrosiozyma überführt.Ein Bestimmungsschlüssel der Arten der Gattung wurde angegeben.

     

Some aspects of the regulation of nitrogen metabolism in the yeast genus candida. Study of the kineties of ammonium transport to the cells of hydrocarbon oxidizing yeast of the genus candida with a change in nitrogen nutrition

In his study the kinetics of the ammonium transport to he hydrocarbon-oxidizing yeast cells and the specific features of its regulation as one of the aspects of catabolite nitrogen repression were investigated. As the objects 3 mesophilic strains of C. maltosa, the thermotolerant strain C. rugosa as well as a collection of the thermotolerant strain C. blankii BKM-Y-462 type were selected.     

The influence of yeast metabolism on dispersion in a fluidised yeast bed

Summary The effect of yeast metabolism on the dispersion characteristics of a fluidised bed fermentor containing flocs of the yeast Saccharomyces carlsbergensis was investigated. Dispersion in the metabolizing fluidised yeast floc system was compared with the dispersion in an inert yeast floc system and in a glass bead system. Breakdown in plug-flow was found to occur in the metabolically active yeast bed when the flow rate was increased over a relatively narrow operating range (up to a dilution rate of 0.08 h^-1). The superficial liquid velocity at which perfect mixing was approximated was some 18 times greater in the inert yeast floc system than in the metabolizing yeast floc system.Abbreviations C Tracer concentration - C ₀ Concentration of tracer at time t=0 - V Mixing chamber volume - v Volumetric flow rate - l Time - t Mean residence time - N Number of tanks in series - D/l Dispersion number - ² variance     

Pollen production of the genus Cupressus

The study of potential pollen emission in the genus Cupressus was carried out in the city of Córdoba (Spain). Pollen production of 227 trees of the represented species of Cupressus in the area (Cupressus sempervirens, C. macrocarpa and C. arizonica) was studied by counting the number of pollen grains per flower, the number of flowers per branch, and the number of branches per m² of surface area. Total surface area was estimated by considering the shape of the tree as a cone and estimating the average height and radius of each species. Results indicated that there was little variation in the number of pollen grains produced by a flower within each species. Equally, there were few differences in the number of grains per flower among the species, although C. arizonica had slightly fewer than the other species because it possessed fewer stamens per flower. However, there were clear differences in the number of flowers per branch, with C. macrocarpa having the highest floral density, considerably lower in C. arizonica and even lower in C. sempervirens. All of this indicates that the pollen contribution of C. macrocarpa to the atmosphere is far greater than that of C. arizonica and C. sempervirens. The results indicate a different potential emission in each species, and this must be taken into account when determining the quantity of pollen present in the atmosphere. The maximum amount of pollen grains that one individual can spread is provided in this study and would provide useful data in the development of an airborne forecasting system.     

The genus Argemone

Summary Crosses between three diploid (A. mexicana; A. subfusiformis; A. albiflora) and one tetraploid (A. ochroleuca) Argemone species were made. The F₁'s were cytogenetically analysed. All the triploid hybrids were sterile and did not set any seed. In the species there was predominantly bivalent pairing (14II; 28II) and high pollen and seed fertility. The F₁'s displayed different configurations, e.g. I, II and III, and pollen fertility was low; the capsules were shrunken and did not contain any seed.In the two combinations mexicana X ochroleuca and subfusiformis X ochroleuca, pairing was identical and both auto- and allosyndesis were observed. The number of univalents, bivalents and trivalents varied in the three combinations but the number of associations did not differ significantly. In the albiflora X ochroleuca combination as many as 13 trivalents were observed.In general a negative correlation was observed between univalents and chiasmata per cell. However, chiasma frequency and paired associations displayed a positive correlation.It is deduced that sufficient similarities existed between one of the ochroleuca and the three diploid species genomes; the remainder of the ochroleuca genome had homologous chromosomes. Apparently A. ochroleuca carried enough cryptic intergenomal homologies which ordinarily remained unexposed. In the hemizygous state however, as in the F₁'s, there was intergenomal pairing. In an attempt to resolve the conflict between homology and bivalent pairing in the species, a diploidizing genetic mechanism is envisaged. Alternatively an acute propensity to preferential pairing caused bivalent formation. Such a system or systems caused meiotic isolation of various genomes and instituted normal fertility. Furthermore, the segmental allotetraploid nature of A. ochroleuca is concluded. The cytogenetic relationship between mexicana and ochroleuca is appraised.     

Functional proteomics within the genus Lactobacillus

Lactobacillus are mainly used for the manufacture of fermented dairy, sourdough, meat, and vegetable foods or used as probiotics. Under optimal processing conditions, Lactobacillus strains contribute to food functionality through their enzyme portfolio and the release of metabolites. An extensive genomic diversity analysis was conducted to elucidate the core features of the genus Lactobacillus, and to provide a better comprehension of niche adaptation of the strains. However, proteomics is an indispensable “omics” science to elucidate the proteome diversity, and the mechanisms of regulation and adaptation of Lactobacillus strains. This review focuses on the novel and comprehensive knowledge of functional proteomics and metaproteomics of Lactobacillus species. A large list of proteomic case studies of different Lactobacillus species is provided to illustrate the adaptability of the main metabolic pathways (e.g., carbohydrate transport and metabolism, pyruvate metabolism, proteolytic system, amino acid metabolism, and protein synthesis) to various life conditions. These investigations have highlighted that lactobacilli modulate the level of a complex panel of proteins to growth/survive in different ecological niches. In addition to the general regulation and stress response, specific metabolic pathways can be switched on and off, modifying the behavior of the strains.     

Chemotaxonomy of the genus Talaromyces

Species of the ascomycetous genus Talaromyces have been examined for profiles of secondary metabolites on TLC. The greatest number of specific metabolites were produced on oatmeal-, malt extract- and yeast-extract sucrose agars. Profiles of intracellular secondary metabolites produced on oatmeal agar were specific for each species and provided a means of simple differentiation of the taxa. Examination of the most important species using high performence liquid chromatography (HPLC) allowed to solve some taxonomic problems. Known mycotoxins are produced by T. stipitatus (duclauxin, talaromycins, botryodiploidin), T. stipitatus chemotype II (emodin), T. panasenkoi (spiculisporic acid), T. trachyspermus (spiculisporic acid), T. trac macrosporus (duclauxin) and T. wortmannii (rugulosin). Wortmannin is produced by an atypical strain of T. flavus but not T. wortmannii. Several other secondary metabolites were discovered for the first time in the following species: Glauconic acid is produced by T. panasenkoi, T. ohiensis and T. trachyspermus; vermiculine by T. ohiensis; duclauxin by T. flavus var. macrosporus and the mitorubrins by T. flavus and T. udagawae. The profiles of secondary metabolites support the established taxonomy of the species based on morphology, showing the genetic stability of profiles of secondary metabolites in Talaromyces. Two new taxa are proposed: T. macrosporus comb. nov. (stat. anam. Penicillium macrosporum stat. nov.), and Penicillium vonarxii, sp. nov. for the anamorph of T. luteus.     

Marker chromosomes commonly observed in the genus Glycine

Summary Soybean [Glycine max (L.) Merr.] chromosomes were analyzed using the chromosome image analyzing system, CHIAS, and seven groups, including subgroups, were identified based on morphological characteristics. Two pairs of chromosomes were conspicuous in their morphological traits. One pair of chromosomes, which had the largest arm ratio among all the chromosomes, was commonly observed in the species in all three subgenera of the genus Glycine. These chromosomes also displayed a unique pattern after N-banding and were detected as marker chromosomes. G. soja, which is considered to be the ancestor of G. max, has two types of marker chromosomes. The lines that carry the same type as G. max may be the ancestors of G. max among the lines of G. soja. The morphological differences of the marker chromosomes within the species in the subgenus Soja are discussed in relation to the domestication process of soybean.     

Molecular diversity of oligotrophic and neurotropic members of the black yeast genus Exophiala,with accent on E. dermatitidis

Analysis of ITS rDNA of the black yeast Exophiala dermatitidis revealed a close phylogenetic relationship to the meristematic fungus Sarcinomyces phaeomuriformis. As most strains ofS. phaeomuriformis have a yeast-like phenotype corresponding to the anamorph genus Exophiala, a new combination in Exophiala is proposed. On the basis of ITS sequence, M-13 fingerprint and SSU intron data, two main entities could be distinguished within E. dermatitidis. One of these (B) contained prevalently strains from environmental sources, while the other (A) mainly comprised strains from clinical sources. This may be due to a difference in virulence. All strains from severe brain and disseminated infections in East Asia clustered in group A. However, strains of group A caused a relatively mild fungemia in patients outside East Asia. This revised version was published online in June 2006 with corrections to the Cover Date.     

Photoreactivation in the genus Bacillus

Photoreactivation of ultraviolet radiation-induced DNA damage was examined in exponential-phase cells of six mesophilic species of the genus Bacillus. Under the experimental conditions used, it was observed that the laboratory strains B. cereus strain T and B. thuringiensis var. thuringiensis strain NRRL-B4039 exhibited strong photoreactivation (86-fold and 70-fold respectively). Bacillus licheniformis strain ATCC 8480 exhibited moderate (15-fold) photoreactivation. Weak photoreactivation was observed in B. subtilis strain 168 (4-fold) and B. megaterium strain QM B1551 (3.4-fold). Bacillus amyloliquefaciens strain H demonstrated no detectable photoreactivation.     

Structure of tendon organs in fishes of the genus Polymixia

Summary Modified branchiostegal rays 1 through 3 support the proximal end of the paired hyoid barbels in the beardfish (Beryciformes: Polymixiidae). The polymixiid barbel is unusual in that it has an unique intrinsic muscular system. Using silver impregnation and electron microscopic techniques, unencapsulated, free nerve endings were located within the tendon of the third modified branchiostegal ray. Branchiostegal rays 1 and 2 do not have any free nerve endings associated with their tendons, however. It is suggested that the free nerve endings are proprioceptors acting as stretch-sensitive mechanoreceptors, and that branchiostegal ray 3 acts as part of a sensory apparatus for monitoring the positional state of the barbel. Branchiostegal rays 1 and 2 merely provide support for the barbel.Abbreviations used in Figures BA barbel - br r 3 branchiostegal ray 3 - IM intermandibularis - IOP interoperculum - LIM interoperculomandibular ligament - MD mandible - MX maxilla - OP operculum - PM premaxilla - POP preoperculum - SOP suboperculum     

Phylogenetic analysis of the genus Hordeum using repetitive DNA sequences

A set of six cloned barley (Hordeum vulgare) repetitive DNA sequences was used for the analysis of phylogenetic relationships among 31 species (46 taxa) of the genus Hordeum, using molecular hybridization techniques. in situ hybridization experiments showed dispersed organization of the sequences over all chromosomes of H. vulgare and the wild barley species H. bulbosum, H. marinum and H. murinum. Southern blot hybridization revealed different levels of polymorphism among barley species and the RFLP data were used to generate a phylogenetic tree for the genus Hordeum. Our data are in a good agreement with the classification system which suggests the division of the genus into four major groups, containing the genomes I, X, Y, and H. However, our investigation also supports previous molecular studies of barley species where the unique position of H. bulbosum has been pointed out. In our experiments, H. bulbosum generally had hybridization patterns different from those of H. vulgare, although both carry the I genome. Based on our results we present a hypothesis concerning the possible origin and phylogeny of the polyploid barley species H. secalinum, H. depressum and the H. brachyantherum complex.     

Monosaccharide transport systems in the yeast Rhodotorula glutinis

By using d-glucose, d-xylose, d-galactose and d-fructose in the strictly aerobic yeast Rhodotorula glutinis and by comparing the half-saturation constants with inhibition constants the yeast was shown to possess a single common system for d-xylose and d-galactose (K _m's and K _i's all between 0.5 and 1.1 mM) but another distinct transport system for d-fructose. The transport of d-glucose has a special position in that glucose blocks apparently allotopically all the other systems observed although it uses at least one of them for its own transport. The different character of d-glucose uptake is underlined by its relative independence of pH (its K _m is completely pH-insensitive) in contrast with all other sugars. At low concentrations, all sugars show mutual positive cooperativity in uptake, suggesting at least two transport sites plus possibly a modifier site on the carrier.     

Activity of the yeast FLP recombinase in Arabidopsis

The coding sequence for FLP recombinase, originally from the 2 plasmid of Saccharomyces cerevisiae, was introduced into Arabidopsis behind the cauliflower mosaic virus 35S promoter. FLP activity was monitored by the glucuronidase activity resulting from inversion of an antisense-oriented GUS reporter gene flanked by a pair of FRT target sites in inverted repeat. FLP-dependent Gus activity was observed in both transient assays and transgenic plants. The FLP system will be useful for a variety of in planta genetic manipulations.