Acquisition of full-field strain distributions on ovine fracture callus cross-sections with electronic speckle pattern interferometry

This study evaluated the feasibility of assessing continuous strain distributions on fracture callus cross-sections with an electronic speckle pattern interferometry (ESPI) system. Mid-sagittal callus cross-sections were harvested from ovine tibiae. One low stiffness (LS) specimen and one high stiffness (HS) specimen were selected to evaluate the feasibility for strain acquisition over a range of callus properties. The HS specimen was 147 times stiffer in compression than the LS specimen. ESPI captured continuous strain distributions on both specimens. Peak strain was located adjacent to cortical boundaries in the osteotomy gap. In response to 5N compression, peak compressive strain of 5.8% in the LS specimen was over two orders of magnitude higher than peak compressive strain of 0.013% in the HS specimen. In conclusion, ESPI-based strain acquisition enables reproducible quantification of strain distributions on callus cross-sections. Such measurements may support validation of computational models and evaluation of experimental results in fracture healing research.     

A deformation gradient decomposition method for the analysis of the mechanics of morphogenesis

A new finite element model is proposed for the analysis of the mechanical aspects of morphogenesis and tested on the biologically well studied gastrulation phenomenon, in particular ventral furrow invagination of the Drosophila melanogaster embryo. A set of mechanisms are introduced in the numerical model, which lead to the observed deformed shapes. We split the total deformation into two parts: an imposed active deformation, and an elastic deformation superimposed onto the latter. The active deformation simulates the effects of apical constriction and apico-basal elongation. These mechanisms are associated with known gene expressions and so in this way we attempt to bridge the well explored signalling pathways, and their associated phenotypes in a mechanical model. While the former have been studied in depth, much less can be said about the forces they produce and the mechanisms involved. From the numerical results, we are able to test different plausible mechanical hypotheses that generate the necessary folding observed in the invagination process. In particular, we conclude that only certain ratios between both modes (apical constriction and apico-basal elongation) can successfully reproduce the invagination process. The model also supports the idea that this invagination requires the contribution of several mechanisms, and that their redundancy provides the necessary robustness.     

Predicting the external formation of a bone fracture callus: an optimisation approach

The formation of a fracture callus in vivo tends to form in a structurally efficient manner distributing tissues where mechanical stimulus persists. Therefore, it is proposed that the formation of a fracture callus can be modelled in silico by way of an optimisation algorithm. This was tested by generating a finite element model of a transversal bone fracture embedded in a large tissue domain which was subjected to axial, bending and torsional loads. It was found that the relative fragment motion induced a compressive strain field in the early callus tissue which could be utilised to simulate the formation of external callus structures through an iterative optimisation process of tissue maintenance and removal. The phenomenological results showed a high level of congruence with in vivo healing patterns found in the literature. Consequently, the proposed strategy shows potential as a means of predicting spatial bone healing phenomena for pre-clinical testing.     

Predicting the external formation of a bone fracture callus: an optimisation approach

The formation of a fracture callus in vivo tends to form in a structurally efficient manner distributing tissues where mechanical stimulus persists. Therefore, it is proposed that the formation of a fracture callus can be modelled in silico by way of an optimisation algorithm. This was tested by generating a finite element model of a transversal bone fracture embedded in a large tissue domain which was subjected to axial, bending and torsional loads. It was found that the relative fragment motion induced a compressive strain field in the early callus tissue which could be utilised to simulate the formation of external callus structures through an iterative optimisation process of tissue maintenance and removal. The phenomenological results showed a high level of congruence with in vivo healing patterns found in the literature. Consequently, the proposed strategy shows potential as a means of predicting spatial bone healing phenomena for pre-clinical testing.     

Community analysis of methanogenic archaea within a riparian flooding gradient

Anoxic soils in river floodplains (or riparian soils) are a source of methane emission. However, little is known about the ecology and community structure of archaeal methanogenic microbes, which are a crucial component of methane flux in those habitats. We studied the archaeal community in the vertical profile of four different sites along the River Waal in the Netherlands. These sites differ in their annual flooding regime ranging from never or seldom to permanently flooded. The archaeal community structure has been characterized by terminal restriction fragment length polymorphism (T-RFLP) and comparative sequence analysis of the archaeal SSU rRNA gene and the mcrA gene. The latter gene codes for the alpha-subunit of methyl-coenzyme M reductase. Additionally, the potential methanogenic activity was determined by incubation of soil slurries under anoxic conditions. The community composition differed only slightly with the depth of the soil (0-20 cm). However, the diversity of archaeal SSU rRNA genes increased with the frequency of flooding. Terminal restriction fragment length polymorphism analysis of mcrA gene amplicons confirmed the results concerning methanogenic archaea. In the never and rarely flooded soils, crenarchaeotal sequences were the dominant group. In the frequently and permanently flooded soils, Methanomicrobiaceae, Methanobacteriaceae, Methanosarcinaceae and the uncultured Rice Clusters IV and VI (Crenarchaeota) were detectable independently from duration of anoxic conditions. Methanosaetaceae, on the other hand, were only found in the permanently and frequently flooded soils under conditions where concentrations of acetate were < 30 microM. The results indicate that methanogens as well as other archaea occupy characteristic niches according to the flooding conditions in the field. Methanosaetaceae, in particular, seem to be adapted (or proliferate at) to low acetate concentrations.     

Iron acquisition within host cells and the pathogenicity of Leishmania

Iron is an essential cofactor for several enzymes and metabolic pathways, in both microbes and in their eukaryotic hosts. To avoid toxicity, iron acquisition is tightly regulated. This represents a particular challenge for pathogens that reside within the endocytic pathway of mammalian cells, because endosomes and lysosomes are gradually depleted in iron by host transporters. An important player in this process is Nramp1 (Slc11a1), a proton efflux pump that translocates Fe^{2 +} and Mn²⁺ ions from macrophage lysosomes/phagolysosomes into the cytosol. Mutations in Nramp1 cause susceptibility to infection with the bacteria Salmonella and Mycobacteria and the protozoan Leishmania , indicating that an available pool of intraphagosomal iron is critical for the intracellular survival and replication of these pathogens . Salmonella and Mycobacteria are known to express iron transporter systems that effectively compete with host transporters for iron. Until recently, however, very little was known about the molecular strategy used by Leishmania for survival in the iron-poor environment of macrophage phagolysosomes. It is now clear that intracellular residence induces Leishmania amazonensis to express LIT1, a ZIP family membrane Fe²⁺ transporter that is required for intracellular growth and virulence.     

Development of a pH gradient within a biofilm is dependent upon the limiting nutrient

Monospecies Citrobacter sp. biofilms were grown in a laminar flow cell using a carbon-limiting medium. Microelectrode measurements showed no change in pH between the bulk fluid and biofilm when the flow cell was supplied with the carbon-limiting medium under static or flowing conditions. When the biofilm was supplied with a phosphate-limiting medium the biofilm became more acidic than the bulk fluid and developed a gradient within. The implications for metals-bioremediation processes are discussed.     

Studying the deformation of arachnid slit sensilla by a fracture mechanical approach

Slit sensilla are sensory organs which measure strains in the exoskeleton of arachnids. They occur as isolated slits, in loose groups and in close parallel arrangements known as lyriform organs or compound slit sensilla. The deformations of the slits' faces induced by far-field strains acting on groups of slits are studied using Kachanov's analytical approximations for the opening displacements of cracks, a method developed within the framework of fracture mechanics. The accuracy of the approach is assessed by comparisons with results obtained by finite element analysis. The limits of its applicability to slit sensilla are found to be reached when the lateral spacing between interacting slits is less than half their length, i.e., the method is suitable for studying single slits and loose groups but not lyriform organs. The influence of a number of geometrical parameters of slit sensilla on the deformation patterns of the faces of parallel slits in generic arrangements is studied, viz., spacing between slits, longitudinal shifts between slits, and slit length. The results are presented as opening distances along the length of the cracks and in terms of normalized diagrams that relate the opening distances at mid-length of the slits to the geometrical parameters. In addition, Kachanov's method is used to find a set of slit lengths that give rise to prescribed opening distances.     

Fine structural localization of alkaline phosphatase in the fracture callus of the rat

Summary The fine structural localization of nonspecific alkaline phosphomonoesterase in the different cells constituting the fracture callus in the rat was studied by incubating sections of glutaraldehyde-fixed callus tissue of variable age in media containing -glycerophosphate and either lead or calcium ions. The specificity of the reactions were tested by exposing the tissues to inhibitors of alkaline phosphatase.The results showed presence of final product on the plasma membranes and associated structures (subplasmalemmal endocytotic vesicles) of fibroblasts, pre-osteoblasts, osteoblasts, and cartilaginous cells in the callus. With the calcium method, reaction product was demonstrated in vesicular elements of the Golgi apparatus in osteoblasts and chondrocytes. Precipitates indicating presence of alkaline phosphatase activity were also observed on the membranes bordering cytoplasmic projections and fragments of cytoplasm located adjacent to enzyme-containing cells. Furthermore, the globule-shaped bodies in the matrix (Bonucci-bodies) showed evidence of alkaline phosphatase activity.The evidence obtained supported the view that alkaline phosphatase plays a role in calcification. It is suggested that transfer of cellular alkaline phosphatase to the sites of initial calcification in the extracellular matrix occurs by way of pinched off vesicular fragments of the cytoplasm and plasma membrane of osteogenic enzyme-producing cells; these structures appear to move awy from their cells of origin to form the Bonucci bodies in the matrix.     

Fine structural localization of acid phosphomonoesterase in the osteoblasts and osteocytes of fracture callus

Summary The fine structural localization of acid phosphatase was studied in osteoblasts and osteocytes of fracture callus in the rat using glutaraldehyde-fixed EDTA-decalcified, dimethylsulfoxide-treated tissues incubated in a modified Gomori lead salt medium. The results showed that enzyme was not only localized in conventional lysosomes but also in Golgi cisternae, Golgi associated vesicles, and — in the case of osteoblasts — GERL-like regions. The Golgi regions were large and abundant in osteoblasts and small and inconspicuous in osteocytes while lysosomes were of approximately equal size in the two cell types but appeared to be more concentrated in osteocytes. The results were discussed in relation to the possible role of lysosomes and lysosomal enzymes in osteocytic osteolysis and the functional diversity of the Golgi apparatus in osteogenic cells.     

Studies on the ultrastructural localization of adenosine triphosphatase activity in fracture callus

Summary The fine structural localization of Mg⁺⁺-activated and Mg⁺⁺-independent neutral adenosine triphosphatase (ATPase) was studied in fracture callus of the rat using EDTA-decalcified DMSO-treated tissues incubated in Wachstein-Meisel type lead-containing media, and N-ethylmaleimide, NaF, EDTA and histidine as inhibitors to test the specificity of the reaction. Final product was found to be deposited on the plasma membranes and associated structures (subplasmalemmal vesicles and vacuoles) of phagocytic monocytoid cells, fibroblasts, osteoblasts and ruffled border regions of osteoclasts when Mg⁺⁺ was present in the incubation medium; the most abundant precipitate was noted on the plasma membranes of osteoblasts. When Mg⁺⁺ was omitted from the medium, the ruffled borders of osteoclasts were the only plasmalemmal sites showing conspicuous activity. This apparently Mg⁺⁺-independent ATPase was also demonstrated in the lysosomes of all the different cell types in the callus and in the vacuoles and specific granules located beneath the ruffled border of osteoclasts; lack of inhibition with NaF suggested that the enzyme was not a conventional nonspecific acid phosphatase. Neither the Mg⁺⁺-activated nor the Mg⁺⁺-resistant ATPase were inhibited by EDTA or histidine, indicating that they were unrelated to non-specific alkaline phosphatase. Deposition of final product did not occur on the plasma membranes of chondroblasts, chondrocytes of osteocytes.     

Histochemical and biochemical studies on the localization and activity of lysosomal enzymes in fracture callus

Summary Quantitative biochemical studies on the activities of four lysosomal hydrolases during different stages of fracture healing in the rat were performed, and the results obtained were integrated with those of histochemical observations relating to changes in the localization of acid phosphatase in the same tissue.The findings showed presence of all the four lysosomal enzymes assayed in the callus; during early callus formation the enzyme activities calculated on a DNA basis increased up to about 12 days after the fracture. The enzyme activities appeared to be roughly reflected histochemically by the acid phosphatase staining. The increasing activity during early callus formation seemed to depend on the presence of numerous macrophage-like cells in the tissue containing many large lysosomes. A decrease in enzyme activity was found after day 12. Comparison with the histochemical and ultrastructural findings suggested that this decrease was due to a reduction in the number of macrophage-like cells and a concomitant increase in osteogenic cells with a lower enzyme content.