Spatial models to account for variation in observer effort in bird atlases

To assess the importance of variation in observer effort between and within bird atlas projects and demonstrate the use of relatively simple conditional autoregressive (CAR) models for analyzing grid‐based atlas data with varying effort. Pennsylvania and West Virginia, United States of America. We used varying proportions of randomly selected training data to assess whether variations in observer effort can be accounted for using CAR models and whether such models would still be useful for atlases with incomplete data. We then evaluated whether the application of these models influenced our assessment of distribution change between two atlas projects separated by twenty years (Pennsylvania), and tested our modeling methodology on a state bird atlas with incomplete coverage (West Virginia). Conditional Autoregressive models which included observer effort and landscape covariates were able to make robust predictions of species distributions in cases of sparse data coverage. Further, we found that CAR models without landscape covariates performed favorably. These models also account for variation in observer effort between atlas projects and can have a profound effect on the overall assessment of distribution change. Accounting for variation in observer effort in atlas projects is critically important. CAR models provide a useful modeling framework for accounting for variation in observer effort in bird atlas data because they are relatively simple to apply, and quick to run.     

Succession of bird communities in young temperate rainforests following thinning

We repeated bird and vegetation surveys in 1991–1992 and 2005–2006 among young managed stands and old-growth forests in southeast Alaska to evaluate whether pre-commercial thinning of managed stands influenced the bird community. We compared decadal changes in bird densities and forest vegetation among 3 stand types: managed stands originating from clearcuts 35 years ago that were left untreated (unthinned), managed stands thinned at uniform spacing (thinned), and old growth with no prior timber harvest. We did not detect differences in decadal trends in avian densities between thinned and unthinned stands for 15 of 16 common bird species using a repeated-measures design. Thinning did not result in greater recruitment of overstory-nesting species as predicted. This was likely because of 1) similar increases in tree heights ( = 9–10 m) and canopy cover ( = 29–43%) between unthinned and thinned stands across decades and 2) the relatively young successional stage of these stands, which had only begun to recruit medium and large size conifers (dbh ≥ 36 cm). Decadal trends in densities of most (88%) understory-nesting bird species did not differ between thinned and unthinned stands. Shrub cover decreased by 22% and 31% across decades in thinned and unthinned stands, respectively. Bird community composition in managed stands reflected the general decadal changes in forest vegetation with a shift in dominance from understory species in the early 1990s (80–85% of total bird density) to an equal abundance of understory (45–54%) and overstory species in the mid-2000s. The latter was more similar to old-growth stands, which were dominated by overstory species (67–71%). Overstory-nesting birds in old growth increased in density by 49% across decades. Densities of cavity-nesting species remained unchanged in managed stands and less than densities in old growth across decades, possibly because of a lack of large trees and snags for nest sites. Overall, thinning of clearcut stands, the primary silvicultural system in the region, had few measurable benefits to birds nearly 20 years after treatment. Monitoring over the 70–100-year harvest rotation may be necessary to fully test whether thinning accelerates succession of bird communities in clearcut stands. However, partial harvests that retain large trees and snags should also be explored as alternatives to better maintain late-succession avifauna throughout the harvest rotation in southeast Alaska. © 2012 The Wildlife Society.     

Noncrop features and heterogeneity mediate overwintering bird diversity in agricultural landscapes of southwest China

Farmland birds are of conservation concerns around the world. In China, conservation management has focused primarily on natural habitats, whereas little attention has been given to agricultural landscapes. Although agricultural land use is intensive in China, environmental heterogeneity can be highly variable in some regions due to variations in crop and noncrop elements within a landscape. We examined how noncrop heterogeneity, crop heterogeneity, and noncrop features (noncrop vegetation and water body such as open water) influenced species richness and abundance of all birds as well as three functional groups (woodland species, agricultural land species, and agricultural wetland species) in the paddy‐dominated landscapes of Erhai water basin situated in northwest Yunnan, China. Birds, crop, and noncrop vegetation surveys in twenty 1 km × 1 km landscape plots were conducted during the winter season (from 2014 to 2015). The results revealed that bird community compositions were best explained by amounts of noncrop vegetation and compositional heterogeneity of noncrop habitat (Shannon–Wiener index). Both variables also had a positive effect on richness and abundance of woodland species. Richness of agricultural wetland species increased with increasing areas of water bodies within the landscape plot. Richness of total species was also greater in the landscapes characterized by larger areas of water bodies, high proportion of noncrop vegetation, high compositional heterogeneity of noncrop habitat, or small field patches (high crop configurational heterogeneity). Crop compositional heterogeneity did not show significant effects neither on the whole community (all birds) nor on any of the three functional groups considered. These findings suggest that total bird diversity and some functional groups, especially woodland species, would benefit from increases in the proportion of noncrop features such as woody vegetation and water bodies as well as compositional heterogeneity of noncrop features within landscape.     

海南岛尖峰岭热带山地雨林林下鸟类群落研究

从 2 0 0 0年 5月到 2 0 0 2年 3月 ,用网捕法对海南岛尖峰岭热带山地雨林 (包括原始林和次生林 )林下鸟群落进行研究。共张网 3 992 .7网· h,捕到林下鸟 3 12只 40种 ,隶属于 6个目 11个科。林下鸟群落虽然以小于 2 5g重的雀形目鸟类占优势 ,但许多个体较大的非雀形目鸟类也到林下活动 ,最大个体重达 3 70 g,大于 10 0 g重的个体占整个林下鸟生物量的比例较大。尖峰岭热带山地雨林中的林下鸟以食虫鸟为主 ,食虫鸟占整个林下鸟种数的 70 .0 %、鸟数量的 77.56% ;食果鸟虽然占第 2位 ,但其所占比例较小。林下鸟的种类组成和密度存在季节变化。留鸟是林下鸟最重要的成分 ,留鸟占鸟类种类的比例超过 85% ,留鸟的捕获数量占整个捕获鸟类数量的比例超过 90 % ;迁徙鸟的种类和数量均较少 ,对林下鸟群落的季节变化影响不大。原始林与演替 40 a后的次生林林下鸟平均网捕率相近但林下鸟群落种类组成不同 ,其种的相似性仅为 0 .3 5。     

Bird richness and composition along an agricultural gradient in New Guinea: The influence of land use,habitat heterogeneity and proximity to intact forest

Abstract We examined variation in bird species richness, abundance and guild composition along an agricultural gradient in New Guinea, and looked for any additive influence of habitat heterogeneity on these variables. The study was based on a grid of survey plots, six plots wide and 24 plots long with the long axis running from a settlement 2.4 km through active and abandoned agricultural plots towards a large area of forest. Each circular survey plot (25 m radius) was assigned to a broad habitat type, ten habitat measures taken, and birds counted for 1 h in each plot. Principal component analysis (PCA) habitat axis 1 described an axis of decreasing forest alteration (larger trees, greater tree densities, fuller canopy) that was positively correlated with distance from the settlement. Bird richness and abundance were highest at intermediate disturbance levels (plots with mid‐range axis 1 scores). Proportions of insectivores and frugivores increased with decreasing forest alteration, while proportions of nectarivores decreased. We calculated three measures of habitat heterogeneity by comparing each plot's PCA score to those of eight neighbouring plots (50–110 m away). These measures reflected how different the plot was to its neighbours, how variable the habitat was around the plot, and the degree to which the plot bordered less disturbed forest. We related these measures to plot bird variable scores independently, and to residuals following regressions of bird scores against PCA scores. Heterogeneity measures had no significant influence on abundance or richness measures, but there were greater proportions of frugivores in plots showing a given degree of habitat alteration if they bordered more pristine habitat. While we readily identified differences in bird communities along the agricultural gradient, the influences of habitat heterogeneity were not striking for birds at this fine scale.     

Assessing the assessors: Quantifying observer variation in vegetation and habitat assessment

Vegetation assessment protocols used in research, monitoring and statutory planning often rely on the consistent application of methods by multiple assessors. Consequently, a study was undertaken to evaluate the application of a vegetation condition assessment protocol by a range of assessors. The aim of the study was to quantify variation among assessors in their measurement of field‐based vegetation attributes using Queensland’s BioCondition protocol, and to determine the effect of variability on the final condition score. The study consisted of 77 assessors, ranging from nil to 25 years experience in vegetation assessment, who each undertook an assessment at one site following training. Six of the 20 attributes used to derive the final condition score were not assessed consistently, this being because of a small number of assessors who had misinterpreted the protocol and had inappropriately assessed some attributes. Despite inclusion of outliers, 82% of assessors were within 10 points of the median condition score for the site. Based on the results, the definition and measurement of problematic attributes have been either clarified or removed from the revised assessment procedure. The study demonstrated that with training prior to use, assessors were able to consistently assess condition at the study site.     

Pooling robustness in distance sampling: Avoiding bias when there is unmodelled heterogeneity

The pooling robustness property of distance sampling results in unbiased abundance estimation even when sources of variation in detection probability are not modeled. However, this property cannot be relied upon to produce unbiased subpopulation abundance estimates when using a single pooled detection function that ignores subpopulations. We investigate by simulation the effect of differences in subpopulation detectability upon bias in subpopulation abundance estimates. We contrast subpopulation abundance estimates using a pooled detection function with estimates derived using a detection function model employing a subpopulation covariate. Using point transect survey data from a multispecies songbird study, species-specific abundance estimates are compared using pooled detection functions with and without a small number of adjustment terms, and a detection function with species as a covariate. With simulation, we demonstrate the bias of subpopulation abundance estimates when a pooled detection function is employed. The magnitude of the bias is positively related to the magnitude of disparity between the subpopulation detection functions. However, the abundance estimate for the entire population remains unbiased except when there is extreme heterogeneity in detection functions. Inclusion of a detection function model with a subpopulation covariate essentially removes the bias of the subpopulation abundance estimates. The analysis of the songbird point count surveys shows some bias in species-specific abundance estimates when a pooled detection function is used. Pooling robustness is a unique property of distance sampling, producing unbiased abundance estimates at the level of the study area even in the presence of large differences in detectability between subpopulations. In situations where subpopulation abundance estimates are required for data-poor subpopulations and where the subpopulations can be identified, we recommend the use of subpopulation as a covariate to reduce bias induced in subpopulation abundance estimates.     

Role of magpie in bird community formation in secondary forest

We analyzed a bird community in a secondary forest and the results show that the magpie was one of the key groups in the secondary forest. The key group is identified based on the nests used by other birds at a rate of 25%-40.17%. The size of the community is different and the number of these key groups is not certain.     

Role of magpie in bird community formation in secondary forest

We analyzed a bird community in a secondary forest and the results show that the magpie was one of the key groups in the secondary forest. The key group is identified based on the nests used by other birds at a rate of 25%–40.17%. The size of the community is different and the number of these key groups is not certain. __________ Translated from Journal of Northeast Normal University (Natural Science Edition), 2006, 38 (3): 644-651 [译自: 东北师大学报(自然科 学版)]     

Use of classical bird census transects as spatial replicates for hierarchical modeling of an avian community

New monitoring programs are often designed with some form of temporal replication to deal with imperfect detection by means of occupancy models. However, classical bird census data from earlier times often lack temporal replication, precluding detection‐corrected inferences about occupancy. Historical data have a key role in many ecological studies intended to document range shifts, and so need to be made comparable with present‐day data by accounting for detection probability. We analyze a classical bird census conducted in the region of Murcia (SE Spain) in 1991 and 1992 and propose a solution to estimating detection probability for such historical data when used in a community occupancy model: the spatial replication of subplots nested within larger plots allows estimation of detection probability. In our study, the basic sample units were 1‐km transects, which were considered spatial replicates in two aggregation schemes. We fit two Bayesian multispecies occupancy models, one for each aggregation scheme, and evaluated the linear and quadratic effect of forest cover and temperature, and a linear effect of precipitation on species occupancy probabilities. Using spatial rather than temporal replicates allowed us to obtain individual species occupancy probabilities and species richness accounting for imperfect detection. Species‐specific occupancy and community size decreased with increasing annual mean temperature. Both aggregation schemes yielded estimates of occupancy and detectability that were highly correlated for each species, so in the design of future surveys ecological reasons and cost‐effective sampling designs should be considered to select the most suitable aggregation scheme. In conclusion, the use of spatial replication may often allow historical survey data to be applied formally hierarchical occupancy models and be compared with modern‐day data of the species community to analyze global change process.     

Diversity of understory birds in old stands of native and Eucalyptus plantations

We compared the vegetation structure between old (>70 year) stands of planted diversified native forests and stands of Eucalyptus tereticornis embedded in a mosaic of Eucalyptus stands. We then tested for differences in the abundance, species richness, species composition, and ecological traits (forest dependence, sensitivity to forest fragmentation, and diet) of the understory bird assemblages inhabiting both kinds of stands. We expected differences in the structure of the bird assemblages because of the different origins and management strategies (contrary to native stands, Eucalyptus stands were selectively logged in the past). Three stands of each habitat (native and Eucalyptus) were sampled with mist nets during 11 months. Eucalyptus stands had a denser understory, whereas native plantations had a more developed vertical structure and a greater density of native trees. The abundance distribution of bird species was more homogeneous in Eucalyptus than in native stands. Eucalyptus had slightly higher species richness (36 species) than native stands (32 species). The composition of species and the occurrence of the diet, forest dependence, and sensitivity to forest fragmentation categories were similar between habitats. Some bird species (e.g. Turdus leucomelas), however, were more abundant in one habitat over the other. Old stands of Eucalyptus and planted native forest can harbor a diverse bird community similar in structure but not exactly equivalent for individual bird species. Planting native diversified forests and keeping set‐aside stands of the exotic tree should be viewed as complementary rather than alternative strategies for maintaining bird diversity within plantations.     

Fish-eating bird abundance in oligotrophic lakes in Kejimkujik National Park,Nova Scotia,Canada

Aquatic bird population data in 40 oligotrophic lakes and ponds in Nova Scotia, Canada indicates that only lakes > 20 ha support territorial pairs of Common Loon (Gavia immer) and only lakes 40 ha produce their young. Broods of Common Merganser (Mergus merganser americanus) occurred in lakes > 25 ha and loon and merganser broods together occurred only in lakes 80 ha. The fish production in the lakes was estimated from the total phosphorus vs fish yield relationship obtained in similar, oligotrophic lakes in Ontario. Considering the fish consumption and mergansers until fledging along with the maintenance of the adults during the same period (about 200 and 130 kg fish respectively) and the estimated fish production in these lakes, there is a close balance between the size of water body and its fish production to the occupancy and production of piscivorous birds.     

Direct and indirect effects of area,energy and habitat heterogeneity on breeding bird communities

Aim To compare the ability of island biogeography theory, niche theory and species–energy theory to explain patterns of species richness and density for breeding bird communities across islands with contrasting characteristics. Location Thirty forested islands in two freshwater lakes in the boreal forest zone of northern Sweden (65°55′ N to 66°09′ N; 17°43′ E to 17°55′ E). Methods We performed bird censuses on 30 lake islands that have each previously been well characterized in terms of size, isolation, habitat heterogeneity (plant diversity and forest age), net primary productivity (NPP), and invertebrate prey abundance. To test the relative abilities of island biogeography theory, niche theory and species–energy theory to describe bird community patterns, we used both traditional statistical approaches (linear and multiple regressions) and structural equation modelling (SEM; in which both direct and indirect influences can be quantified). Results Using regression‐based approaches, area and bird abundance were the two most important predictors of bird species richness. However, when the data were analysed by SEM, area was not found to exert a direct effect on bird species richness. Instead, terrestrial prey abundance was the strongest predictor of bird abundance, and bird abundance in combination with NPP was the best predictor of bird species richness. Area was only of indirect importance through its positive effect on terrestrial prey abundance, but habitat heterogeneity and spatial subsidies (emerging aquatic insects) also showed important indirect influences. Thus, our results provided the strongest support for species–energy theory. Main conclusions Our results suggest that, by using statistical approaches that allow for analyses of both direct and indirect influences, a seemingly direct influence of area on species richness can be explained by greater energy availability on larger islands. As such, animal community patterns that seem to be in line with island biogeography theory may be primarily driven by energy availability. Our results also point to the need to consider several aspects of habitat quality (e.g. heterogeneity, NPP, prey availability and spatial subsidies) for successful management of breeding bird diversity at local spatial scales and in fragmented or insular habitats.     

Spatial and temporal changes in bird assemblages in forest fragments in an eastern Amazonian savannah

We investigated the effects of forest fragmentation on bird assemblages in an Amazonian savannah landscape with forest fragments that have been isolated for more than 100 years. The study was conducted in areas surrounding the village of Alter do Chão (2°31′S, 55°00′W), Santarém, Brazil. Bird surveys and measurements of tree density were undertaken in 25 areas, with 19 plots in forest fragments of different sizes and six in an area of continuous forest. Data on forest‐fragment size, perimeter, and isolation were obtained from a georeferenced satellite image. Variation in number of bird species recorded per plot was not related to vegetation structure (tree density). The number of bird species recorded per plot increased significantly only with fragment area, but was not influenced by fragment shape or degree of isolation, even when considering species from the savannah matrix in the analysis. Fragments had fewer rare species. Multivariate ordination analyses (multiple dimensional scaling, [MDS]) indicated that bird species composition changed along a gradient from small to large forest fragments and continuous‐forest areas. In the Amazonian savannah landscapes of Alter do Chão, the organization and composition of bird assemblages in forest fragments are affected by local long‐term forest‐fragmentation processes. Differences in the number of bird species recorded per plot and assemblage composition between forest fragments and continuous forest were not influenced by forest structure, suggesting that the observed patterns in species composition result from the effects of fragmentation per se rather than from preexisting differences in vegetation structure between sites. Nevertheless, despite their long history of isolation, the forest fragments still preserve a large proportion (on average 80%) of the avifauna found in continuous‐forest areas. The fragments at Alter do Chão are surrounded by natural (rather than planted) grassland, with many trees in the savannah matrix and the landscape has vast areas covered by forest, which may have helped to ameliorate the influences of forest fragmentation.     

Spatial variation and biogeography of sand forest avian assemblages in South Africa

Aim To examine biogeographical affiliations, habitat‐associated heterogeneity and endemism of avian assemblages in sand forest patches and the savanna‐like mixed woodland matrix. Location Two reserves in the Maputaland Centre of Endemism (MC) on the southern Mozambique Coastal Plain of northern KwaZulu‐Natal, South Africa. Methods Replicated surveys were undertaken in each of the two habitat types in each reserve, providing species abundance data over a full year. Vegetation structure at each of the survey sites was also quantified. Differences between the bird assemblages and the extent to which vegetation structure explained these differences were assessed using multi‐variate techniques. Biogeographical comparisons were based on species presence/absence data and clustering techniques. Results Bird assemblages differed significantly between habitats both within a given reserve and between reserves, and also between reserves for a given habitat. Differences in vegetation structure contributed substantially to differences between the avian assemblages. Of the four species endemic to the MC, three (Neergaard’s sunbird, Rudd’s apalis, and Woodward’s batis) were consistently present in sand forest. The fourth (pink‐throated twinspot) preferred mixed woodland. None of these endemic species was classed as rare. In the biogeographical analysis, both the sand forest and the mixed woodland bird assemblages were most similar to bird assemblages found in the forest biome or the Afromontane forest biome, depending on the biome classification used. Main conclusions The close affinities of sand forest and mixed woodland assemblages to those of the forest biome are most likely due to similarities in vegetation structure of these forests. Bird assemblages differ between the sand forest and mixed woodland habitats both within a given reserve and between reserves, and also between reserves for a given habitat. These differences extend to species endemic to the MC. Thus, conservation of sand forest habitat in a variety of areas is necessary to ensure the long‐term persistence of the biota.