Water-extractable humic substances alter root development and epidermal cell pattern in Arabidopsis

The effect of a low-molecular weight, water-extractable fraction of humic substances (WEHS) derived from sphagnum peat on post-embryonic plant development has been studied using Arabidopsis roots. Application of humic substances caused an array of changes in root morphology, such as an increase in root hair length and density, formation of ectopic root hairs, and an increase in cell proliferation in the root ground tissue. Application of WEHS affected genes involved in epidermal cell fate specification, suggesting that humic substances can alter developmental programs at an early stage of root cell differentiation. The WEREWOLF and GLABRA2 genes, encoding negative regulators of the root hair cell fate, were significantly down-regulated in the presence of WEHS. Thus, the presence of humic substances caused an ordered remodeling of the root morphology, leading to an increased absorptive surface of the root. Growth in the presence of WEHS did not rescue the phenotype of the root hair defective rhd6 mutant. Analyzing BA3:uidA and DR5:uidA transgenic plants, carrying auxin response elements, and monitoring the expression of the auxin-responsive GH3 gene by real-time RT-PCR did not provide evidence for a WEHS-induced expression of auxin-related genes. It is concluded that WEHS do not exert their effects in an auxin-like manner.     

Calcium localization pattern in clover root hair cells associated with infection process: Studies with aureomycin

Summary Localized regions of calcium were shown to change in clover root hair cells after infection withRhizobium trifolii as shown with the Ca⁺⁺ binding antibiotic, chlorotetracycline. Some root hairs from the immature zone showed increased calcium fluorescence distributed through most of the cell. These root hair had a morphology with a notched side wall, typical of cells infected by bacteria. The maturing root hairs that show a growing infection thread or start of an infection thread, have a similar increased calcium fluorescence, especially around the area of origin of infection thread and tip of the root hair cell.Kettering contribution no. 722.     

Observations on root hair production by lucerne,maize and perennial ryegrass grown in a sandy loam

Summary Root hair production by young plants of lucerne, maize and perennial ryegrass grown in a sandy loam was assessed by examining roots growing at a soil-glass interface. Results are given for the percentage frequency distribution of root hair lengths and the numbers of root hairs produced per mm root. The mean lengths of root hairs observed on lucerne, maize and perennial ryegrass roots were 0.35, 0.90 and 1.12 mm respectively. Lucerne produced an average of 105 root hairs per mm of root, whereas maize produced 161 and perennial ryegrass produced 88. The total length of root hairs per mm length of root was estimated to be 37, 146 and 99 mm for lucerne, maize and perennial ryegrass resp. Letcombe Laboratory     

The horizontally pefrorated soil system: A new root observation method

Summary A new method, the horizontally perforated soil system, has been developed which allows the growth dynamics and architecture of root system to be observed in a fairly normal root envirobnment.     

Changes in arbuscular mycorrhizal associations and fine root traits in sites under different plant successional phases in southern Brazil

Fine root morphological traits and distribution, arbuscular mycorrhizal (AM) fungi, soil fertility, and nutrient concentration in fine root tissue were compared in sites under different successional phases: grass plants, secondary forest, and mature forest in Londrina county, Paraná state, southern Brazil. Soil cores were collected randomly at the 0-10- and 10-20-cm depths in three quadrants (50 m2) in each site. Plants from the different successional stages displayed high differences in fine root distribution, fine root traits, and mycorrhizal root colonization. There were increases in the concentration of nutrients both in soil and fine roots and decrease of bulk soil density along the succession. The fine root biomass and diameter increased with the succession progress. The total fine root length, specific root length, root hair length, and root hair incidence decreased with the succession advance. Similarly, the mycorrhizal root colonization and the density of AM fungi spores in the soil decreased along the succession. Mycorrhizal root colonization and spore density were positively correlated with fine root length, specific root length, root hair length, root hair incidence, and bulk density and negatively correlated with fine root diameter and concentration of some nutrients both in soil and root tissues. Nutrient concentration in root tissue and in soil was positively correlated with fine root diameter and negatively correlated with specific root length, root hair length, and root hair incidence. These results suggest different adaptation strategies of plant roots for soil exploration and mineral acquisition among the different successional stages. Early successional stages displayed plants with fine root morphology and AM fungi colonization to improve the root functional efficiencies for uptake of nutrients and faster soil resource exploration. Late successional stages displayed plants with fine root morphology and mycorrhizal symbiosis for both a lower rate of soil proliferation and soil exploration capacity to acquire nutrients.     

Emerging aspects of ER organization in root hair tip growth: Lessons from RHD3 and atlastin

Cell polarity is a fundamental aspect of eukaryotic cells. A central question for cell biologists is how the polarity of a cell is established and maintained. Root hairs are exceptionally polarized structures formed from specific root epidermal cells. The morphogenesis of root hairs is characterized by the localized cell growth in a small dome at the tip of the hair, a process called tip growth. Root hairs are thus an attractive model system to study the establishment and maintenance of cell polarity in eukaryotes. Research on Arabidopsis root hairs has identified a plethora of molecular and cellular components that are important for root hair tip growth. Recently, studies on RHD3 and Atlastin have revealed a surprising similarity with respect to the role of the tubular ER network in tip growth of root hairs in plants and the axonal outgrowth of corticospinal neurons in neurological disorders known as hereditary spastic paraplegia (HSP). In this mini-review, we highlight recent progress in understanding of the function and regulation of RHD3 in the generation of the tubular ER network and discussed ways in which RHD3 could be involved in the establishment and maintenance of root hair tip growth.     

Timing of root dormancy and tolerance to root waterlogging in clonal Sitka spruce

 Actively growing root tips of Picea sitchensis (Bong.) Carr. plants are highly susceptible to damage if waterlogged, but they are known to have some tolerance after they stop growing in the autumn. This paper describes the selection of clones on the basis of root dormancy timing and the corresponding responses of their roots to over-winter waterlogging. Sitka spruce transplants of Alaska, Queen Charlotte Islands (QCI), and Washington provenances were screened for early or late root dormancy over 2 successive years. Cuttings were propagated from the selected plants and after growing on for 2 years, they were planted in transparent acrylic tubes within outdoor ‘root observation chambers’. Extension of main roots and the timing of onset of root dormancy was recorded on the clonal plants. The tubes were flooded in November and maintained with a water table 280 mm below the soil surface until March of the next year. Waterlogging caused most main root tips to die back, but within 2 months of draining regeneration occurred on the main roots below the waterlogging level. This regeneration was most commonly the growth of existing lateral tips or production of new lateral roots. Roots of early-dormant Washington plants died back on average 129 mm less than late-dormant Washington plants, and early-dormant Alaska plants had 173 mm less dieback than late-dormant Alaska plants. Differences between the clones of the QCI provenance were not significant. The 40% and 52% increases in survival depth of roots in early-dormant Washington and Alaska clones respectively indicates a potential for improving the rooting depth of Sitka spruce on seasonally waterlogged soils by planting clones selected on the basis of root dormancy. Received: 14 July 1997 / Accepted: 15 September 1997     

A technique for estimating fine root production in the forest ecosystems

Summary The soil-block technique was developed to estimate fine root production in forest ecosystems. This technique produced estimates similar to conventional soil coring but required less labor and reduced disturbance to the soil-root environment.     

A new dimension to hummingbird-flower relationships

The close correspondence between the bills of hummingbirds and the lengths of the flowers they feed from has been interpreted as an example of coadaptation. Observations of birds feeding at flowers longer and shorter than their bills, however, and the lack of experimental evidence for any feeding advantage to short bills, seem to contradict this interpretation. I address this problem by considering a little-studied dimension of floral morphology: corolla diameter. In laboratory experiments on female ruby-throated hummingbirds (Archilochus colubris), probing abilities (maximum extraction depths) increased with increasing corolla diameter. Handling times increased with decreasing corolla diameter, resulting in handling time equivalents, i.e., flowers having the same handling times but different lengths and diameters. Longer-billed birds had greater maximum extraction depths and shorter handling times than shorter-billed birds at all corolla diameters greater than the width of the bill. In contrast, shorter-billed birds made fewer errors inserting their bills into narrow flowers. Hence, differences in bill lengths apparently are associated with trade-offs in foraging abilities, whereby longer-billed birds are able to feed at long flowers and may do so more quickly, whereas shorter-billed birds are able to feed more successfully at narrow flowers.     

Time-series analysis of measurements on living cells illustrated by analysis of particle movement in the cytoplasm of tomato root hairs

Summary Within a given root hair, the velocity of particle movement, here equated with cytoplasmic streaming, is usually very variable, making it difficult to distinguish experimentally-induced changes in velocity from those due to natural variability. Time-series analysis has been combined with piece-wise linear regression to provide an objective means of assessing the results of experiments in which the rate of streaming was recorded repeatedly from the same root hair. Ordinarily, regression and analysis of variance assume that the values in a data set are not strongly autocorrelated. These methods are applicable to sets of single observations (thus, they cannot be used with data obtained by repeated sampling of the same cell). By contrast, time-series analysis can take account of autocorrelations within the data and allows trends in the noise structure to be separated from treatment effects. The statistical methods described in the present paper are illustrated using the results from experiments in which the effect of -naphthalene acetic acid on streaming velocity in tomato root hairs was recorded. The conclusions reached are in accord with published accounts of variation in protoplasmic streaming and the known behaviour of cells in response to auxins. Our results also provide an explanation for the failure of some workers to observe any consistent changes in streaming velocity in response to exogenous auxin. The method described makes use of well documented statistical techniques and could be applied to other investigations in which sequential measurements of quantifiable parameters, such as fluorometric determination of intracellular pH or concentrations of calcium, are made on intact living cells.Abbreviations NAA -naphthalene acetic acid - ARMA auto-regressive moving average models - AIC akaike information criterion - d.f. degrees of freedom     

Hybridomas: A new dimension in biological analyses

Summary Since the first report of hybridomas producing monoclonal antibodies by Kohler and Milstein in 1975, this technique has spread to nearly all areas of biological, biochemical, and biomedical research. Watching the use of these methods spread from immunologists to cell biologists, developmental biologists, biochemists and to other biological disciplines and observing the nearly logarithmic increase in publications using these reagents has been in itself fascinating and informative. An overview of the development of this technology and its applications is presented including the use of monoclonal antibodies to study cell surface molecules, differentiation antigens, receptors, and histocompatibility antigens. The use of these antibodies to analyze microorganisms and parasitic antigens as well as their use in the genetic analysis of human cell surface antigens and the detection of polymorphic variation in enzymes and other proteins is discussed. Examples of the application of monoclonal reagents to the study of tumor cell biology including the labeling of metastatic tumor cells and the detection of cell surface molecules implicated in the regulation of growth control and cell division are provided. Presented in the symposium on The Biology of Hybridomas at the 32nd Annual Meeting of the Tissue Culture Association. Washington, D.C., June 7–11. 1981. This symposium was supported in part by the following organizations: Bethesda Research Laboratories, Cetus Corporation, Hybritech Incorporated, MAB-Monoclonal Antibodies, Inc., National Capital Area Branch of the Tissue Culture Association, New England Nuclear Corporation, and Ortho Pharmaceutical Corporation.     

A note on the root development in dry tropical naturally revegetated coalmine spoils

Root biomass distribution on an age series of naturally revegetated coalmine spoils in a dry tropical environment is described. 65 to 85% of the total root biomass was observed in the upper 0–15 cm of spoil depth. Highest (724 g m^-2) and lowest (186 g m^-2) values of root biomass were found on 12-yr old protected flat surfaces and 5-yr old grazed undulating sites, respectively. There is an increase in root biomass with increase in age of coalmine spoil.     

Directional cell-to-cell communication in theArabidopsis root apical meristem III. Plasmodesmata turnover and apoptosis in meristem and root cap cells during four weeks after germination

Summary Plasmodesmata frequency and distribution in root cap cells ofArabidopsis thaliana root tips were characterized during four weeks after germination to understand the symplasmic control of apoptosis. Apoptotic cells in some of the root apical-meristem cells and in root cap cells were identified by the terminal deoxynucleotidyl transferase-mediated dUTP nick-end labeling reaction and characterized by electron microscopy. Starting at the second week after germination, cells in the outermost layers of the root cap showed typical apoptotic features, including nuclear DNA fragmentation, chromatin condensation, cytoplasmic vacuolation, and organelle destruction. Intercellular connections, indicated by the frequency and number of plasmodesmata per cell length, were significantly reduced in the walls of outer root cap cells. This shows that cells become symplasmically isolated during the apoptosis process. In apoptotic root cap cells, the majority of nonfunctional plasmodesmata were observed to be associated with degenerated endoplasmic reticulum; this state was prior to the detection of any nuclear DNA fragmentation. Other nonfunctional plasmodesmata were sealed by heterogeneous cell wall materials. However, in immature epidermal and cortical cells in 4-week-old arrested roots the endoplasmic reticulum associated with plasmodesmata became disconnected as a result of protoplast condensation and shrinkage. No degenerated endoplasmic reticulum was observed in these cells. These observations suggest that the apoptotic processes in the root body and the root cap are different.     

连作大豆根分泌物对根腐病病原菌的化感作用

采用砂培,水培和室内培养等试验方法研究了连作大豆根分泌物对根腐病病原菌的化感作用。结果表明,与对照相比,连作和轮作大豆根分泌物对半镰孢菌,粉红粘帚功和尖镰孢菌尤其是对半裸镰孢菌的生长有明显的化感促进作用,差异达显著或极显著水平,低浓度时,连作大豆根分泌物对半裸镰孢菌和粉红粘帚菌生长的化感促进作用明显大于轮作大豆,差异达显著水平,同一茬口,高浓度根分泌物半裸镰孢菌生长的化感促进作用小于低浓度,而且在连作大豆中差异达显著水平。与对照相比,高浓度的邻苯二甲酸和丙二酸（L5和B5）对半裸镰孢菌,粉红粘帚菌和尖镰孢菌尤其是对半裸镰孢菌的生长有化感抑制作用,差异达显著或极显著水平,而低浓诬的邻苯二甲酸和丙二酸对半裸镰孢菌,粉红粘帚菌和尖镰孢菌的生长有化感促进,部分差异达显著水平。     

Effect of Light on Root Hair Formation in Arabidopsis thaliana Phytochrome-Deficient Mutants

Arabidopsis thaliana lacking phytochrome A, phytochrome B or both (double mutant) were analyzed by comparing their photoresponse with that of the wild type. Results indicate that root hair formation in Arabidopsis was strongly stimulated by light irradiation. Both phytochrome A and phytochrome B are responsible for photoinduction by continuous red light irradiation, while only phytochrome A mediates the response under continuous far-red light. The fluence response relationships to a red light pulse in the wild type displayed a biphasic trend similar to that previously observed in lettuce seedlings, with the first phase showing a sharp maximum at 78.3 Jm⁻², and the second one operating over a wider fluence range (3,100–9,400 Jm⁻²) two orders of magnitude higher than the first one. Analysis of the fluence response curves for red light induction in the phytochrome mutants revealed that phytochrome A is responsible for the first phase in the wild type, while the second is the result of the combined action of both phytochrome A and phytochrome B. Received 13 August 1999/ Accepted in revised form 22 December 1999     

Allocating nitrogen away from a herbivore: a novel compensatory response to root herbivory

Centaurea maculosa, an invasive North American plant species, shows a high degree of tolerance to the root-boring biocontrol herbivore, Agapeta zoegana. For example, infested individuals of C. maculosa often exhibit more rigorous growth and reproduction compared with their non-infested counterparts. Compensatory responses to aboveground herbivores often involve increases in leaf area and/or photosynthetic capacity, but considerably less is known about root system compensatory responses to belowground herbivory. We used a ¹⁵N labeling approach to evaluate whether compensatory adjustments in N acquisition via changes in root morphology and/or physiological uptake capacity could explain the ability of C. maculosa to tolerate root herbivory. Root herbivory reduced whole plant N uptake by more than 30% and root uptake capacity by about 50%. Despite a marked reduction in N procurement, herbivory did not affect total biomass or shoot N status. Infested plants maintained shoot N status by shifting more of the acquired N from the root to the shoot. To our knowledge, shifting N allocation away from a root herbivore has not been reported and provides a plausible mechanism for the host plant to overcome an otherwise devastating effect of a root herbivore-induced N deficit.     

Identification of key genes involved in root development of tomato using expressed sequence tag analysis

Root system of plants are actually fascinating structures, not only critical for plant development, but also important for storage and conduction. Due to its agronomic importance, identification of genes involved in root development has been a subject of intense study. Tomato is the one of the most consumed vegetables in the world. Tomato has been used as model system for dicot plants because of its small genome, well-established transformation techniques and well-constructed physical map. The present study is targeted to identify of root specific genes expressed temporally and also gene(s) involved in lateral root and profuse root development. A total of 890 ESTs were identified from five EST libraries constructed using SSH approach which included temporal gene regulation (early and late) and genes involved in morphogenetic traits (lateral and profuse rooting). One hundred sixty-one unique ESTs identified from various libraries were categorized based on their putative functions and deposited in NCBI-dbEST database. In addition, 36 ESTs were selected for validation of their expression by RT-PCR. The present findings will help in shedding light to the unexplored developmental process of root growth in tomato and plant in general.     

Lateral root initiation in Arabidopsis: developmental window, spatial patterning, density and predictability

BACKGROUND AND AIMS: The basic regulatory mechanisms that control lateral root (LR) initiation are still poorly understood. An attempt is made to characterize the pattern and timing of LR initiation, to define a developmental window in which LR initiation takes place and to address the question of whether LR initiation is predictable. METHODS: The spatial patterning of LRs and LR primordia (LRPs) on cleared root preparations were characterized. New measures of LR and LRP densities (number of LRs and/or LRPs divided by the length of the root portions where they are present) were introduced and illustrate the shortcomings of the more customarily used measure through a comparative analysis of the mutant aux1-7. The enhancer trap line J0121 was used to monitor LR initiation in time-lapse experiments and a plasmolysis-based method was developed to determine the number of pericycle cells between successive LRPs. KEY RESULTS: LRP initiation occurred strictly acropetally and no de novo initiation events were found between already developed LRs or LRPs. However, LRPs did not become LRs in a similar pattern. The longitudinal spacing of lateral organs was variable and the distance between lateral organs was proportional to the number of cells and the time between initiations of successive LRPs. There was a strong tendency towards alternation in LR initiation between the two pericycle cell files adjacent to the protoxylem poles. LR density increased with time due to the emergence of slowly developing LRPs and appears to be unique for individual Arabidopsis accessions. CONCLUSIONS: In Arabidopsis there is a narrow developmental window for LR initiation, and no specific cell-count or distance-measuring mechanisms have been found that determine the site of successive initiation events. Nevertheless, the branching density and lateral organ density (density of LRs and LRPs) are accession-specific, and based on the latter density the average distance between successive LRs can be predicted.     

Structure and development of stomata on the primary root of Ceratonia siliqua L

Stomata of various sizes are produced on the primary root of Ceratonia siliqua L. Most are generated during embryogenesis, prior to seed desiccation. They can be detected on the dry embryo in a wide zone just above the root tip. Initially, large stomata are formed. These have the ability to induce divisions of their neighbouring cells, creating particular cell patterns around them. Later, small perigenous stomata are generated. As the root grows following seed germination, the stomatal zone overlaps with that of the root hairs. Although root stomata of C. siliqua undergo a structural differentiation that seems almost identical to that of the elliptical stomata formed on leaves, they are unable to move and remain permanently open. Polarizing microscopy of fully differentiated stomata and young stomata at the stage of stomatal pore formation revealed deposition of radial cellulose microfibril systems on their periclinal walls. However, these systems were less developed than those on leaf stomata, a feature that might be responsible for their inactivity. Besides, plastids of the root guard cells (GCs) do not differentiate into chloroplasts but function solely as amyloplasts. Root stomata have a short life span. During rapid and intense root growth, GCs cannot keep pace with the elongation of their neighbouring rhizodermal cells. They therefore split in their mid-region, transversely to the stoma axis. The two parts of the transversely torn stoma are dragged apart and a large opening is formed on the root surface, just above the substomatal cavity. The root stomata, together with these openings, may facilitate increased gaseous exchange during respiration and/or an increased transfer of some nutrients and water in the rapidly growing primary root.