Programmed cell death in trypanosomatids and other unicellular organisms

In multicellular organisms, cellular growth and development can be controlled by programmed cell death (PCD), which is defined by a sequence of regulated events. However, PCD is thought to have evolved not only to regulate growth and development in multicellular organisms but also to have a functional role in the biology of unicellular organisms. In protozoan parasites and in other unicellular organisms, features of PCD similar to those in multicellular organisms have been reported, suggesting some commonality in the PCD pathway between unicellular and multicellular organisms. However, more extensive studies are needed to fully characterise the PCD pathway and to define the factors that control PCD in the unicellular organisms. The understanding of the PCD pathway in unicellular organisms could delineate the evolutionary origin of this pathway. Further characterisation of the PCD pathway in the unicellular parasites could provide information regarding their pathogenesis, which could be exploited to target new drugs to limit their growth and treat the disease they cause.     

Diversity of Organisms: How Much Do We Know?

The history of Invertebrate Zoology over the past 40 years canbe used to illustrate interest in organisms and some of theways in which the symposium's question may be interpreted. Thestudy of animal organisms from a holistic perspective has progressedenormously as reflected in changes in described and estimatednumbers of species, in the discovery of new higher taxa andin the growth of literature. Generalizations on the biologyof animal organisms, however, rest on relatively small samples,and many of the same organisms that have received the most attentionin the past continue to receive the most today. Symbiosis andcolonial organization have been two important means wherebynew organizational levels for organisms have evolved. Ultrastructuralresearch over the past 20 years has provided new evidence insupport of the hypothesis promulgated long ago that multicellularanimals (metazoans) may have evolved from colonial protistans.Some polymorphic, colonial metazoans have approached or crossedthe threshold to a still more complex level of organism.     

Perspectives on the nanotechnology applications of for the analytical detection of heavy metals in marine organisms

Heavy metals accumulate in organisms throughout the food chain and eventually end up in humans. Heavy metals can cause severe diseases and may even result in death. Therefore, concerns about heavy metal accumulation in marine organisms have increased in recent years. To determine solutions to this concern, the sensitive detection of heavy metals in marine organisms is required. Current detection techniques for heavy metals present in marine organisms have several limitations, such as complicated pre-treatment steps and a lengthy analysis time. Thus, there are increasing needs for the newly developed methods of detecting heavy metals in marine organisms. In this review, we focus here on (1) the current detection techniques available and (2) the application of newly emergent nanotechnology for the sensitive detection of heavy metals in marine organisms.     

Selective potentiation of host resistance in mice following treatment with Pyrexol

The purpose of this study was to examine the effect of treatment with the biologic response modifier Pyrexol on murine host resistance to various infectious organisms. Adult female CD1 mice were treated with a single subcutaneous 100-micrograms injection of Pyrexol at 14, 7, 5, 2, or 1 day prior to infection with various infectious organisms. These organisms included the Herpes simplex type 2 and influenza viruses, as well as the bacteria Listeria monocytogenes and Streptococcus zooepidemicus. Pyrexol treatment was found to significantly potentiate resistance to Listeria organisms, but had no appreciable effect on resistance to any of the other organisms tested. Previous reports have demonstrated that treatment with Pyrexol augments a number of cell-mediated immune parameters, several of which have been shown to be responsible for the elimination of Listeria organisms. These results suggest that Pyrexol is capable of selectively potentiating host resistance to infection.     

How valuable are model organisms for transposable element studies?

Model organisms have proved to be highly informative for many types of genetic studies involving ‘conventional’ genes. The results have often been successfully generalized to other closely related organisms and also, perhaps surprisingly frequently, to more distantly related organisms. Because of the wealth of previous knowledge and their availability and convenience, model organisms were often the species of choice for many of the earlier studies of transposable elements. The question arises whether the results of genetic studies of transposable elements in model organisms can be extrapolated in the same ways as those of conventional genes? A number of observations suggest that special care needs to be taken in generalizing the results from model organisms to other species. A hallmark of many transposable elements is their ability to amplify rapidly in species genomes. Rapid spread of a newly invaded element throughout a species range has also been demonstrated. The types and genomic copy numbers of transposable elements have been shown to differ greatly between some closely related species. Horizontal transfer of transposable elements appears to be more frequent than for nonmobile genes. Furthermore, the population structure of some model organisms has been subject to drastic recent changes that may have some bearing on their transposable element genomic complements. In order to initiate discussion of this question, several case studies of transposable elements in well-studied Drosophila species are presented.     

Not all GMOs are crop plants: non-plant GMO applications in agriculture

Since tools of modern biotechnology have become available, the most commonly applied and often discussed genetically modified organisms are genetically modified crop plants, although genetic engineering is also being used successfully in organisms other than plants, including bacteria, fungi, insects, and viruses. Many of these organisms, as with crop plants, are being engineered for applications in agriculture, to control plant insect pests or diseases. This paper reviews the genetically modified non-plant organisms that have been the subject of permit approvals for environmental release by the United States Department of Agriculture/Animal and Plant Health Inspection Service since the US began regulating genetically modified organisms. This is an indication of the breadth and progress of research in the area of non-plant genetically modified organisms. This review includes three examples of promising research on non-plant genetically modified organisms for application in agriculture: (1) insects for insect pest control using improved vector systems; (2) fungal pathogens of insects to control insect pests; and (3) virus for use as transient-expression vectors for disease control in plants.     

On the mechanisms involved in biological heme crystallization

Blood-feeding organisms digest hemoglobin, releasing large quantities of heme inside their digestive tracts. Free heme is very toxic, and these organisms have evolved several mechanisms to protect against its deleterious effects. One of these adaptations is the crystallization of heme into the dark-brown pigment hemozoin (Hz). Here we review the process of Hz formation, focusing on organisms other than Plasmodium that have contributed to a better understanding of heme crystallization. Hemozoin has been found in several distinct classes of organisms including protozoa, helminths and insects and Hz formation is the predominant form of heme detoxification. The available evidence indicates that amphiphilic structures such as phospholipid membranes and lipid droplets accompanied by specific proteins play a major role in heme crystallization. Because this process is specific to a number of blood-feeding organisms and absent in their hosts, Hz formation is an attractive target for the development of novel drugs to control illnesses associated with these hematophagous organisms.     

Tardigrades survive exposure to space in low Earth orbit

Vacuum (imposing extreme dehydration) and solar/galactic cosmic radiation prevent survival of most organisms in space [1]. Only anhydrobiotic organisms, which have evolved adaptations to survive more or less complete desiccation, have a potential to survive space vacuum, and few organisms can stand the unfiltered solar radiation in space. Tardigrades, commonly known as water-bears, are among the most desiccation and radiation-tolerant animals and have been shown to survive extreme levels of ionizing radiation [2-4]. Here, we show that tardigrades are also able to survive space vacuum without loss in survival, and that some specimens even recovered after combined exposure to space vacuum and solar radiation. These results add the first animal to the exclusive and short list of organisms that have survived such exposure.     

Screening of fungal strains employed in the testing of plastics materials

The problems of selecting tests method and suitable challenge organisms for plastics materials are discussed. Enzyme activities of fungal strains employed in the testing of plastics have been investigated and compared with isolates of these organisms held elsewhere. The ability of organisms to clear a polycaprolactone diol medium has been assessed semiquantitatively and the results discussed in relation to the selection of organisms.     

From asexual to eusocial reproduction by multilevel selection by density-dependent competitive interactions

A game theoretical model is developed to illustrate that multilevel selection by density-dependent competitive interactions in mobile organisms might have played a major role in the evolutionary transitions from asexual over sexual to eusocial reproduction. The model has four equilibria with selection occurring among interacting units of respectively one, two, three, and up to infinitely many individuals. The different equilibria are characterised by different levels of competitive interactions among interacting units, and these levels select for different levels of sexual and co-operative reproduction among the individuals of the units. The model predicts: (i) that low-energy organisms with negligible body masses have asexual reproduction; (ii) that high-energy organisms with non-negligible body masses in evolutionary equilibria have sexual reproduction between a female and a male; (iii) that high-energy organisms with non-negligible body masses that increase exponentially at an evolutionary steady state have co-operative reproduction between a sexual pair and a single sexually produced offspring; and (iv) that high-energy organisms with upward constrained body masses have eusocial reproduction between a sexual pair and up to an infinite number of sexually produced offspring workers.     

Microfluidic tools for developmental studies of small model organisms –nematodes,fruit flies,and zebrafish

Studying the genetics of development with small model organisms such as the zebrafish (Danio Rerio), the fruit fly (Drosophila melanogaster), and the soil-dwelling nematode (Caenorhabditis elegans), provide unique opportunities for understanding related processes and diseases in humans. These model organisms also have potential for use in drug discovery and toxicity-screening applications. There have been sweeping developments in microfabrication and microfluidic technologies for manipulating and imaging small objects, including small model organisms, which allow high-throughput quantitative biological studies. Here, we review recent progress in microfluidic tools able to manipulate small organisms and project future directions and applications of these techniques and technologies.     

Ancient asexual scandals

Asexual organisms that are descended from ancient asexual lineages defy current thinking on the evolution of sexual reproduction; theoreticians have been anxious to explain away their existence. However, a number of groups of organisms, from ferns to rotifers, have been suggested to be anciently asexual, and favourable evidence is being accumulated. Furthermore, new techniques for assessing claims of ancient asexuality have been proposed. Although ancient asexuals challenge current theories of sex, understanding how they manage to persist will help to explain why most organisms are sexual.     

Strategies for improving plasmid stability in genetically modified bacteria in bioreactors.

Exploitation of recombinant organisms for the large-scale, commercial production of foreign proteins is often hampered by the problem of plasmid instability. A wide range of strategies have been reported for improving the stability of recombinant organisms. A combination of manipulating both the genetic design of recombinants and the conditions of culturing the organisms may be used to achieve stable host-vector associations during culture of recombinant organisms in bioreactors.     

Search for structural factors responsible for the stability of proteins from thermophilic organisms

Database including 392 homologous pairs of proteins from thermophilic and mesophilic organisms was created. Using this database we have found that proteins from termophilic organisms contain more atom-atom contacts per residue in comparison with mesophilic homologues. Contribution to increase of the number of contacts gives exterior amino acid residues, accessible for the solvent. Amino acid composition of interior, inaccessible for the solvent, and exterior amino acid residues of proteins from thermophilic and mesophilic organisms were analyzed. We have obtained that exterior residues of proteins from thermophilic organisms contain more such amino acid residues as Lys, Arg and Glu and smaller such amino acid residues as Ala, Asp, Asn. Gln, Ser, and Thr in comparison with proteins from mesophilic organisms. Amino acid compositions of interior residues of considered proteins are not different.     

Adaptive significance of circadian clocks

Circadian clocks are ubiquitous and are found in organisms ranging from bacteria to mammals. This ubiquity of occurrence implies adaptive significance, but to date there has been no rigorous empirical evidence to support this. It is believed that an organism possessing circadian clocks gains fitness advantage in two ways: (i) by synchronizing its behavioral and physiological processes to cyclic environmental factors (extrinsic adaptive value); (ii) by coordinating its internal metabolic processes (intrinsic adaptive value). There is preliminary circumstantial evidence to support both. Several studies using organisms living in constant environments have shown that these organisms possess functional circadian clocks, suggesting that circadian clocks may have some intrinsic adaptive value. Studies to assess the adaptive value of circadian clocks in periodic environments suggest that organisms may have a fitness advantage in those periodic environments, which closely match their own intrinsic periodicity. Furthermore, evidence from organisms living in the wild, selection studies, and studies on latitudinal clines suggest that circadian clocks may have an extrinsic adaptive value as well. In this paper, I have presented several hypotheses for the emergence of circadian clocks and have reviewed some major empirical studies suggesting adaptive significance of circadian clocks.     

Adaptive Significance of Circadian Clocks

Circadian clocks are ubiquitous and are found in organisms ranging from bacteria to mammals. This ubiquity of occurrence implies adaptive significance, but to date there has been no rigorous empirical evidence to support this. It is believed that an organism possessing circadian clocks gains fitness advantage in two ways: (i) by synchronizing its behavioral and physiological processes to cyclic environmental factors (extrinsic adaptive value); (ii) by coordinating its internal metabolic processes (intrinsic adaptive value). There is preliminary circumstantial evidence to support both. Several studies using organisms living in constant environments have shown that these organisms possess functional circadian clocks, suggesting that circadian clocks may have some intrinsic adaptive value. Studies to assess the adaptive value of circadian clocks in periodic environments suggest that organisms may have a fitness advantage in those periodic environments, which closely match their own intrinsic periodicity. Furthermore, evidence from organisms living in the wild, selection studies, and studies on latitudinal clines suggest that circadian clocks may have an extrinsic adaptive value as well. In this paper, I have presented several hypotheses for the emergence of circadian clocks and have reviewed some major empirical studies suggesting adaptive significance of circadian clocks.     

Species as individuals

There is no question that the constituents of cells and organisms are joined together by the part-whole relation. Genes are part of cells, and cells are part of organisms. Species taxa, however, have traditionally been conceived of, not as wholes with parts, but as classes with members. But why does the relation change abruptly from part-whole to class-membership above the level of organisms? Ghiselin, Hull and others have argued that it doesn't. Cells and organisms are cohesive mereological sums, and since species taxa are like cells and organisms in the relevant respects, they, too, are cohesive mereological sums. I provide further reasons in support of the thesis that species are mereological sums. I argue, moreover, that the advocate of this thesis is committed to a form of pluralism with respect to the species concept.     

东海区底拖网作业三类主要渔获物的时空关系

目前海洋捕捞渔获物主要分为三大类,包括鱼类、甲壳类和头足类。这三类生物共存于一片水域,同处一个生态系统,相互之间存在着诸多联系,如捕食与被捕食、生存空间竞争等。基于生态系统水平的海洋生物资源管理与研究已经成为国际趋势和国内要求,将各种生物、群落和环境作为一个整体进行研究是基于生态系统管理与研究的基本途径,而目前多数研究还是将三类生物分开,缺少三者相互关系的综合研究。根据2000年东海区渔业资源大面积调查数据,就三类生物的主要分布区域水平空间关系、三类生物空间分布的距离及其季节变化特征等方面进行了探讨。研究结果发现,三类生物主要分布区域存在空间分离趋势,且该趋势随着三类生物集中区域的聚集程度越高,空间分离的现象越为明显,这种分离特征可能是三类生物相互竞争、相互适应、长期演化的结果,是一种典型的生态位分化现象。四季三类生物的空间分布距离,呈现出春夏季距离远、秋冬季距离近的特点;可能是由于春夏季是多数鱼类的产卵繁殖期,其分布水域主要聚集在产卵场或育卵场,而其它生物无显著聚集或聚集水域不同,从而导致鱼类与其它生物之间的距离增加;而秋冬季是多数鱼类的索饵和越冬洄游季节,分布水域相对分散,从而导致三类生物之间的距离相对近。三类生物的空间分布距离,呈现出头足类与鱼类距离近、鱼类与甲壳类和甲壳类与头足类距离相对远的特点;可能是由于三类生物的不同活动能力所导致,甲壳类活动能力差,一般处于海洋最底水层,头足类活动能力强于甲壳类,能活跃于多个水层,但其游泳能力具有间歇性特点,而鱼类活动能力最强,能长期持续在多水层之间游动。活动能力导致鱼类与头足类的空间交叉区域较多,因而距离较近;而甲壳类与鱼类和头足类的交叉区域较少,因而距离较远。三类生物空间分布的分离特征对于渔业管理也有一定的指导意义,如适当引导不同作业渔船在不同水域进行生产,从而能减少或避免渔船为争夺渔场而发生的纠纷和摩擦。