The visualization of local lesions caused by the common bean mosaic virus

A very simple and quick procedure for the visualization of local lesions caused by the common bean mosaic virus was developed. It consists in a treatment of bean leaves in 96 % èthanol 50 °C warm and in the subsequent staining of the leaves in Lugol solution and washing in 30 % ethanol.     

Conditions critical for optimal visualization of bacteriophage adsorbed to bacterial surfaces by scanning electron microscopy.

The potential of scanning electron microscopy as a tool for the detection of viruses on cell surfaces has been studied using bacteriophage P1 adsorbed to Shigella dysenteriae as a model system. Viral particles were readily detectable by scanning electron microscopy on the surface of infected cells which were fixed with glutaraldehyde followed by postfixation in OsO4 and prepared by critical point drying. The virus-studded surface of the infected cells differed markedly from the relatively smooth surfaces of uninfected control cells. Examination of the same preparations with transmission electron microscopy revealed numerous viral particles adsorbed to the surfaces of infected cells, whereas the control cells were free of viruses as expected. Glutaraldehyde fixation alone did not preserve the surface detail of infected cells: cells adsorbed with viruses were not distinguishable from control cells by scanning electron microscopy although by transmission electron microscopy viruses could be visualized. Air drying from water or absolute alcohol resulted in unsatisfactory preservation as compared to the appearance of infected cells prepared by the critical point method. Thus, scanning electron microscopy is capable of resolving viral particles on cell surfaces, but detection of these particles is completely dependent both on the method of fixation and on the technique of drying used.     

On the determination of optimal thermal enclosures

The paper presents a method for a quantitative study of the influence of the diurnal air temperature cycle, the incidence of solar energy on exposed surfaces and transmission through glass areas, the longwave radiation exchange with the surroundings, and the energy exchange resulting from natural ventilation. The thermal response of a room in a typical concrete office building with glass areas facing south in the northern hemisphere is treated in detail by means of a digital computer program sufficiently general to handle a large variety of problems. For the first time the influence of programmed natural ventilation can be determined in advance. The design of optimal thermal enclosures can be achieved through the technique of exhaustive analysis using methods described in this paper.

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Zusammenfassung Es wird über eine Methode für die quantitative Untersuchung der Einflüsse des tÄglichen Gangs der Lufttemperatur, der Sonnenenergieaufnahme an den bestrahlten OberflÄchen und durch die Glasfenster, des langwelligen Strahlungsaustausches mit der Umgebung und des Energieaustausches durch die natürliche Ventilation berichtet. Das thermische Verhalten eines Raumes in einem typischen Beton-Bürohaus mit südlich orientierten GlasfensterflÄchen auf der nördlichen Halbkugel ist ausführlich durch das digital Rechenmaschinenprogramm untersucht worden, das genügt, um eine ausführliche Anzahl verschiedener Probleme zu behandeln. Zum erstenmal kann der Einfluss der programmierten natürlichen Ventilation vorausbestimmt werden. Der Entwurf eines thermisch optimalen eingeschlossenen Raumes kann durch die hier beschriebenen erschöpfenden Analysen gegeben werden.

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Resume Ce mémoire présente une méthode qui permet d'étudier quantitativement l'influence des facteurs suivants: Le cycle diurne de la température de l'air, l'angle d'incidence de l'énergie solaire sur les parois qui y sont exposées, la transmission de la chaleur à travers des surfaces de verre, les échanges d'énergie avec le milieu ambiant par rayonnement calorifique sur ondes longues et, enfin, les échanges d'énergie par ventilation naturelle. On étudie en détail les conditions thermiques d'une chambre située dans un bâtiment de béton pourvu de parois de verre exposées au sud, le tout étant situé à une latitude boréale. Cette étude est effectuée au moyen d'un programme d'ordinateur digital suffisament général pour s'appliquer à la solution de nombreux problèmes de transmission de chaleur. On montre, pour la première fois, que l'on peut déterminer d'avance l'influence d'une ventilation naturelle programmée. L'établissement de l'optimum thermique des intérieurs peut se faire par une analyse très poussée, c'est à dire à l'aide des méthodes décrites dans cette étude.

     

High-resolution X-ray microtomography for three-dimensional visualization of human stem cell muscle homing

In the perspective of clinical translation of stem cell research, it would be advantageous to develop new techniques to detect donor cells after transplantation to track their fate and thus better understand their role in regeneration of damaged and diseased tissues. In this study we use X-ray computed microtomography for three-dimensional visualization of stem cells that were labeled with magnetic nanoparticles and transplanted via intra-arterial infusion. We show that X-ray computed microtomography offers the possibility to detect with high definition and resolution human cells after transplantation, and opens new possibilities for both experimental stem cell research.     

Assessing potential bias in the determination of rotational correlation times of proteins by NMR relaxation

The various factors that influence the reliable and efficient determination of the correlation time describing molecular reorientation of proteins by NMR relaxation methods are examined. Nuclear Overhauser effects, spin-lattice, and spin-spin relaxation parameters of 15N NMR relaxation in ubiquitin have been determined at 17.6, 14.1, 11.7 and 9.4 Tesla. This unusually broad set of relaxation parameters has allowed the examination of the influence of chemical shift anisotropy, the functional form of the model-free spectral density, and the reliability of determined spin- spin relaxation parameters on the characterization of global tumbling of the protein. Treating the 15N chemical shift anisotropy (CSA) as an adjustable parameter, a consensus value of –170 ± 15ppm for the breadth of the chemical shift tensor and a global isotropic correlation time of 4.1ns are found when using the model-free spectral density to fit T1 and NOE data from all fields. The inclusion of T2 relaxation parameters in the determination of the global correlation time results in its increase to 4.6ns. This apparent inconsistency may explain a large portion of the discrepancy often found between NMR- and fluorescence-derived m values for proteins. The near identity of observed T2 and T1 values suggests that contributions from slow motions are not the origin of the apparent inconsistency with obtained T1 and NOE data. Various considerations suggest that the origin of this apparent discrepancy may reside in a contribution to the spectral density at zero frequency that is not represented by the simple model-free formalism in addition to the usual experimental difficulties associated with the measurement of these relaxation parameters. Finally, an axially symmetric diffusion tensor for ubiquitin is obtained using exclusively T1 and NOE data. A recommendation is reached on the types and combinations of relaxation data that can be used to reliably determine m values. It is also noted that the reliable determination of m values from 15N T1 and NOE relaxation parameters will become increasingly difficult as m increases.     

The relationship of the ESR1 gene polymorphisms with the presence of coronary artery disease determined by coronary angiography

Effects of estrogen on the cardiovascular system, mediated mainly by estrogen receptor type alpha (ER alpha), have been well-defined and specific polymorphisms in the ER alpha gene (ESR1) have been associated with several coronary heart diseases including coronary artery disease (CAD) in studies covering different populations. In the present study, we aimed to investigate whether there is an association between two of the known polymorphisms in the ESR1, named c.454-397T>C and c.454-351A>G, and CAD in a Turkish population. One hundred sixty eight patients with CAD and 99 patients without CAD were included in the study. The ESR1 c.454-397T>C and c.454-351A>G polymorphisms were studied by the conventional polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) method. While no association was found between the c.454-351A>G polymorphism and CAD, the c.454-397T>C genotype distributions were statistically significant independent of known risk factors between CAD-positive (CAD+) and CAD-negative (CAD-) groups (p = 0.001). TT genotype was more frequent in CAD- group than in CAD+ group, 22.2% and 4.8%, respectively. CC genotype was associated with increased risk of CAD (p = 0.001) compared to the TT genotype. When comparing the distribution of CC + TC genotypes to that of TT genotype in CAD+ and CAD- groups, the frequency of CC + TC genotypes showed a significant increase independent of known CAD risk factors in CAD+ subjects (p = 0.001). As a conclusion, a statistically significant relationship between the ESR1 c.454-397T>C polymorphism and CAD were found independent of known CAD risk factors in a Turkish population.     

Coronary vasospasm induced by painful compression of the brachial artery following coronary angiography

We report the occurrence of coronary vasospasm following forceful compression of the brachial artery after coronary angiography.     

Automatic alignment and reconstruction of images for soft X-ray tomography

Soft X-ray tomography (SXT) is a powerful imaging technique that generates quantitative, 3D images of the structural organization of whole cells in a near-native state. SXT is also a high-throughput imaging technique. At the National Center for X-ray Tomography (NCXT), specimen preparation and image collection for tomographic reconstruction of a whole cell require only minutes. Aligning and reconstructing the data, however, take significantly longer. Here we describe a new component of the high throughput computational pipeline used for processing data at the NCXT. We have developed a new method for automatic alignment of projection images that does not require fiducial markers or manual interaction with the software. This method has been optimized for SXT data sets, which routinely involve full rotation of the specimen. This software gives users of the NCXT SXT instrument a new capability - virtually real-time initial 3D results during an imaging experiment, which can later be further refined. The new code, Automatic Reconstruction 3D (AREC3D), is also fast, reliable, and robust. The fundamental architecture of the code is also adaptable to high performance GPU processing, which enables significant improvements in speed and fidelity.     

Current principles in the use of diagnostic coronary angiography

The paper presents current principles in designing diagnostic coronary angiography by taking into account of fundamental achievements in endovascular medicine in diagnosing and treating various heart diseases. Analyzing the world and Russian experience gained, the authors present basic qualitative and quantitative requirements for X-ray contrast study of cardiac vessels to enhance the information value of coronary angiography. They consider necessary diagnostic criteria to be achieved during the study to choose a surgical or endovascular treatment: a type and number of diagnostic film projections, X-ray anatomy of coronary vessels. The present-day accumulated data on X-ray anatomic features of coronary vessels in coronary heart disease are classified. Current classifications of coronary circulation, principles in the development of collateral blood supply, main sources of collaterals, and the specific features of the coronary bed in patients with coronary heart disease are also given.     

Crystal structure determination of thymoquinone by high-resolution X-ray powder diffraction

The crystal structure of 2-isopropyl-5-methyl-1,4-benzoquinone (thymoquinone) and its thermal behavior--as necessary physical and chemical properties--were determined in order to enhance the current understanding of thymoquinone chemical action by using high resolution x-ray powder diffraction, Fourier transform infrared spectroscopy (FTIR), and 3 thermo-analytical techniques thermogravimetric analysis (TGA), differential thermal analysis (DTA), and differential scanning calorimetry (DSC). The findings obtained with high-resolution x-ray powder diffraction and molecular location methods based on a simulated annealing algorithm after Rietveld refinement showed that the triclinic unit cell was a = 6.73728(8) A, b = 6.91560(8) A, c = 10.4988(2) A, alpha = 88.864(2) degrees, beta = 82.449(1) degrees, gamma = 77.0299(9) degrees; cell volume = 472.52(1) A3, Z = 2, and space group P1. In addition, FTIR spectrum revealed absorption bands corresponding to the carbonyl and C-H stretching of aliphatic and vinylic groups characteristically observed in such p-benzoquinones. Also, a chemical decomposition process starting at 65 degrees C and ending at 213 degrees C was noted when TGA was used. DSC allowed for the determination of onset at 43.55 degrees C and a melting enthalpy value of DeltaH(m) = 110.6 J/g. The low value obtained for the fusion point displayed a van der Waals pattern for molecular binding, and the thermograms performed evidence that thymoquinone can only be found in crystalline triclinic form, as determined by DRX methods.