From sparks to spikes: information processing in the electrosensory systems of fish

Recent work on electrosensory systems in fish has combined traditional neuroethological approaches with quantitative methods for characterizing neural coding. These studies have shed light on general issues in sensory processing, including how peripheral sensory receptors encode external stimuli and how these representations are transformed at subsequent stages of processing.     

From snapshot information to long-term population dynamics of Acacias by a simulation model

The African Acacia species A. raddiana is believed to be endangered in the Negev desert of Israel. The ecology of this species is not well understood. The main idea of our study is to learn more about the long-term population dynamics of these trees using snapshot information in the form of size frequency distributions. These distributions are highly condensed indices of population dynamics acting over many years. In this paper, we analyse field data on recruitment, growth, and mortality and use an existing simulation model of the population dynamics of A. raddiana (SAM) to produce contrasting scenarios of these live history processes that are based on the analysed field evidence. The main properties of simulated as well as observed tree size frequency distributions are characterised with Simpson's index of dominance and a new permutation index. Finally, by running the SAM model under the different scenarios, we study the effect of these different processes on simulated size frequency distributions (pattern) and we compare them to size distributions observed in the field, in order to identify the processes acting in the field. Our study confirms rare recruitment events as a major factor shaping tree size frequency distributions and shows that the paucity of recruitment has been a normal feature of A. raddiana in the Negev over many years. Irregular growth, e.g., due to episodic rainfall, showed a moderate influence on size distributions. Finally, the size frequency distributions observed in the Negev reveal the information that, in this harsh environment, mortality of adult A. raddiana is independent of tree size (age).     

From homogeneous eigenvalue problems to two-sex population dynamics

Journal of Mathematical Biology - Enclosure theorems are derived for homogeneous bounded order-preserving operators and illustrated for operators involving pair-formation functions introduced by...     

International Symposium:From Ecosystems to Modern Agriculture

<正>Organized by:Co-organized by:Scientific Committee:Zhihong Xu,Lizhe An,Chun-Ming Liu,Li-Jia Qu,Wei-Cai Yang,Leon Kochian William Lucas and Jia Li Website:http://www.jipb.net/jipbsymposiumlanzhou2015Keynote speakers:·Prof.William Lucas(University of California,Davis,USA)The plant vascular system functions as a major communication conduit to integrate gene regulatory networks at the whole-plant level·Prof.Kang Chong(Institute of Botany,CAS,China)How does rice sensye the cold?     

International Symposium:From Ecosystems to Modern Agriculture

<正>Scientific Committee:Zhihong Xu,Lizhe An,Chun-Ming Liu,Li-Jia Qu,Wei-Cai Yang,Leon Kochian William Lucas and Jia Li Website:http://www.jipb.net/jipbsymposiumlanzhou2015Keynote speakers:·Prof.William Lucas(University of California,Davis,USA)The plant vascular system functions as a major communication conduit to integrate gene regulatory networks at     

Testing quantum dynamics in genetic information processing

Does quantum dynamics play a role in DNA replication? What type of tests would reveal that? Some statistical checks that distinguish classical and quantum dynamics in DNA replication are proposed.     

Nonlinear dynamics and information processing in pacemaker neurons

The paper treats some nonlinear dynamic phenomena in oscillatory activity of a single nerve cell. Based on experiments with CNS bursting pacemaker neurons ofHelix pomatia snail, a mathematical model was studied. The model demonstrates the majority of experimentally observable phenomena and allows one to investigate the role of its separate components. The phenomena demonstrated by model neuron (chaotic behavior, bistability, and sensitivity to parameter variations, initial conditions, and stimuli) may be relevant to information processing in nerve cells. The complexity of [Ca²⁺] _in −V phase diagrams of initial conditions depends on parameters. Transient synaptic impulse produces stable parameter-independent changes in activity of model neuron. These results indicate that a single bursting neuron can work in the neuronal ensemble as a dynamic switch. The sensitivity of this switch is regulated by a neurotransmitter.     

Aggregation and emergence in hierarchically organized systems: population dynamics

The aim of this work is to present aggregation methods of hierarchically organized systems allowing one to replace the initial micro-system by a macro-system described by a few global variables. We also study the relations between the fast micro-dynamics and the slow macro-dynamics which can produce global properties. Emergence corresponds to a bottom-up coupling that is the result effected by a micro-level at a macro-level. As an example, we present prey-predator models with different time scales in an heterogeneous environment. A fast time scale is associated to the migration process on spatial patches and a slow time scale is associated to growth and interactions between the populations. Preys must go on spatial patches where resources are located and where predators can attack them. The efficiency of the predators to catch preys is patch dependent. Perturbation methods allow us to aggregate the initial system of differential equations for the patch sub-populations into a macro-system of two differential equations governing the total population densities. We study the case of density independent and density dependent migrations. In the latter case, we show that different functional responses can emerge in the macro prey-predator model as a result of the coupling between the slow and fast systems.     

Signal transduction: receptor clusters as information processing arrays

The organization of transmembrane receptors into higher-order arrays occurs in cells as different as bacteria, lymphocytes and neurons. What are the implications of receptor clustering for short-term and long-term signaling processes that occur in response to ligand binding?     

Phylogentic constraints,adaptive syndromes,and emergent properties: From individuals to population dynamics

The hypothesis is developed that there are causal linkages in evolved insect herbivore life histories and behaviors from phylogenetic constraints to adaptive syndromes to the emergent properties involving ecological interactions and population dynamics. Thus the argument is developed that the evolutionary biology of a species predetermines its current ecology.Phylogenetic Constraints refer to old characters in the phylogeny of a species and a group of species which set limits on the range of life history patterns and behaviors that can evolve. For example, a sawfly is commonly limited to oviposition in soft plant tissue, while plants are growing rapidly.Adaptive Syndromes are evolutionary responses to the phylogenetic constraints that minimize the limitations and maximize larval performance. Such syndromes commonly involve details of female ovipositional behavior and how individuals make choices for oviposition sites relative to plant quality variation which maximize larval survival. Syndromes also involve larval adaptations to the kinds of choices females make in oviposition. The evolutionary biology involved with phylogenetic constraints and adaptive syndromes commonly predetermines the ecological interactions of a species and its population dynamics. Therefore, these ecological interactions are calledEmergent Properties because they are natural consequences of evolved morphology, behavior, and physiology. They commonly strongly influence the three-trophic-level interactions among host plants, insect herbivores, and carnivores, and the relative forces of bottom-up and top-down influences in food webs. The arguments are supported using such examples as galling sawflies and other gallers, shoot-boring moths and beetles, budworms, and forest Macrolepidoptera. The contrasts between outbreak or eruptive species and uncommon and rare species with latent population dynamics are emphasized.     

From individual behavior to metapopulation dynamics: unifying the patchy population and classic metapopulation models

Spatially structured populations in patchy habitats show much variation in migration rate, from patchy populations in which individuals move repeatedly among habitat patches to classic metapopulations with infrequent migration among discrete populations. To establish a common framework for population dynamics in patchy habitats, we describe an individual-based model (IBM) involving a diffusion approximation of correlated random walk of individual movements. As an example, we apply the model to the Glanville fritillary butterfly (Melitaea cinxia) inhabiting a highly fragmented landscape. We derive stochastic patch occupancy model (SPOM) approximations for the IBMs assuming pure demographic stochasticity, uncorrelated environmental stochasticity, or completely correlated environmental stochasticity in local dynamics. Using realistic parameter values for the Glanville fritillary, we show that the SPOMs mimic the behavior of the IBMs well. The SPOMs derived from IBMs have parameters that relate directly to the life history and behavior of individuals, which is an advantage for model interpretation and parameter estimation. The modeling approach that we describe here provides a unified framework for patchy populations with much movements among habitat patches and classic metapopulations with infrequent movements.     

From inducible defences to population dynamics: modelling refuge use and life history changes in Daphnia

We investigated the relative importance of a behavioural defence (refuge use through diel vertical migration) and a life history change (a reduced size at first reproduction) that are used by daphnids to decrease the risk of predation by visually hunting fish. We used an individual based model of a Daphnia population in a stratified lake to quantify the effects of these inducible defences on Daphnia predation-mortality and the resulting Daphnia population dynamics. Our analysis shows that diel vertical migration (DVM) confers a much stronger protection against fish predation than a reduced size at first reproduction (SFR). DVM allows daphnids to withstand a higher predation pressure in the epilimnion and it decelerates a Daphnia population decline more strongly than a reduced SFR. DVM effectively reduces the (P/B) flow of carbon from daphnids to fish.
Many theoretical studies have only considered the fitness benefits of DVM above 'staying up' in the epilimnion of a lake. Our results suggest that 'staying down' in the hypolimnion would confer an even stronger fitness benefit to Daphnia than DVM at times of peak predation risk. Daphnids that remain in the hypolimnion avoid the predation suffered by migrating daphnids around dusk and dawn. Staying down could prevent a Daphnia population decline, while DVM and a reduced SFR can only decelerate the decrease of Daphnia population densities under heavy fish predation. Staying down at high concentrations of fish infochemicals has in fact been observed within a variety of Daphnia clones and species, both in the laboratory and in stratified lakes.