Differentiation of Mexican species of Haematoloechus looss, 1899 (Digenea: Plagiorchiformes): molecular and morphological evidence

Molecular evidence is interpreted in the light of morphology to examine the validity of several species of Haematoloechus described as Mexican endemics. Internal transcribed spacers 1 and 2 and 28S ribosomal genes were sequenced for 11 isolates. Phylogenetic analysis of separate partitions and combined databases was conducted. Results were analyzed, in the light of morphological evidence. Haematoloechus macrorchis is proposed as a junior synonym of Haematoloechus longiplexus. Haematoloechus pulcher is a sibling species with Haematoloechus complexus in Lerma wetlands. In Mexico, Haematoloechus medioplexus is distributed along the east coast coinciding with the distribution of Rana berlandieri. The sister species of H. medioplexus is Haematoloechus coloradensis, sharing the distribution of the uterus as a synapomorphic character. Haematoloechus illimis is more closely related to H. medioplexus and H. coloradensis than to H. complexus. It can be distinguished by the distribution of the uterus, lobed ovary, and testes.     

Diversity of coevolved weeds in smallholder maize fields of Mexico and Zimbabwe

Theory and empirical data suggest the areas of origin of a crop to be the general area of origin of its coevolved weeds. These longer evolved weeds would have an advantage over species with a shorter evolutionary time and migrate more successfully. We seek to identify patterns by comparing two regions with a shared crop, similar physiographic traits, but little direct contact, one of which is the area of origin of the crop. We compared the diversity of the maize weed flora and its edible components between two rural villages each of Oaxaca, Mexico, and Honde Valley, Zimbabwe, using vegetation sampling, interviews and participatory observation. The Mexican fields had higher species richness and diversity than the Zimbabwean ones. Species richness and densities were higher in the villages that receive more rainfall. Mexican fields had a mainly native weed flora with almost 80% American species and very few of African origin, whereas Zimbabwe had 32% of American and 50% of African origin. The regions shared seven American species and one of African origin. American/Mesoamerican agrestal weeds appear to be more successful in maize. Subsistence farmers in both study areas consumed about 19 edible weed species of which four were common to all villages. Our results also suggest that the presence of 3–4 species of edible weeds per field may be a general pattern in the maize-based systems, and that people not necessarily want or need more, so usefulness—at least as an edible plant—would have a limited influence on migration success.     

Phylogenetic and biogeographical relationships among some holarctic frog lung flukes (Digenea: Haematoloechidae).

A phylogenetic study of 8 North American and European species of frog lung flukes belonging to Haematoloechus was conducted using approximately 850 to 1,000 bases of the intemal transcribed spacer region (ITS 1 + 5.8S + ITS 2) and 1,250 bases of the large subunit (LSU) of the nuclear ribosomal DNA. Adequate phylogenetic resolution could not be obtained from 5.8S or ITS 2 data. Analysis of ITS 1 data produced 2 equally parsimonious trees that differed only in the position of Haematoloechus breviplexus relative to H. medioplexus and H. varioplexus. Single, identical trees were produced by analysis of both LSU sequence data and a data set comprised of all ITS and LSU data. All trees demonstrated 3 distinct evolutionary lineages within the Holarctic Haematoloechus examined. The results confirmed the taxonomic validity of H. abbreviatus and demonstrated that the presence or absence of extracecal uterine loops is not a character meaningful to the recognition of evolutionary lineages or differentiation of genera. Examination of ITS sequence data revealed almost no intraspecific variation within 5 species of Haematoloechus and demonstrated an approximately 150-base indel common to the North American H. longiplexus and the European H. asper. Two of 3 clades revealed by the phylogenetic analyses are comprised of both European and North American species, indicating that lineages of Haematoloechus arose before the breakup of Laurasia and radiated after Eurasia and North America split. Within each of 3 evolutionary lineages, members share similar patterns of arthropod host specificity distinct from patterns found in the other lineages. This suggests that second intermediate host specificity may be a trait that has been conserved through evolutionary time.     

Speciation in North American black basses,Micropterus (Actinopterygii: Centrarchidae)

Abstract.— The Pleistocene Epoch has been frequently cited as a period of intense speciation for a significant portion of temperate continental biotas. To critically assess the role of Pleistocene glaciations on the evolution of the freshwater fish clade Micropterus , we use a phylogenetic analysis of complete gene sequences from two mitochondrial genes (cytochrome b and ND2), and a fossil calibration of the molecular clock to estimate ages of speciation events and rates of diversification. The absence of substantial morphological and ecological divergence together with endemism of five of the eight species in North American tributaries of the Gulf of Mexico may be interpreted as the result of a recent Pleistocene origin for these species. Speciation dates in Micropterus range from 1.01 ± 0.32 to 11.17 ± 1.02 million years ago. Only one speciation event is dated to the Pleistocene, and rates of diversification are not significantly variable in Micropterus. The premise that the Pleistocene was an exceptional period of speciation in Micropterus is not supported. Instead, a Gulf Coast allopatric speciation model is proposed, and predicts periods of dynamic speciation driven by sea level fluctuations in the Late Miocene and Pliocene. The Pleistocene, however, was a period of significant intraspecific mitochondrial lineage diversification. The application of the Gulf Coast allopatric speciation model to the remaining aquatic fauna of the Gulf of Mexico coast in North America will rely on robust phylogenetic hypotheses and accurate age estimations of speciation events.     

Comments on the gonotyl of Proctocaecum macroclemidis (Tkach and Snyder, 2003) n. comb. (Digenea: Acanthostomidae: Acanthostominae), with a key to the genera of acanthostominae and new phylogenetic tree for Proctocaecum Baugh, 1957

The species recently described as Acanthostomum macroclemidis possesses the gonotyl in the form of a solid muscular pad uniquely diagnostic for species of Proctocaecum and is accordingly transferred to that genus. An artificial key to the 5 acanthostomine genera, as well as an updated phylogenetic hypothesis for the 10 known species of Proctocaecum, based on 11 characters and including 2 species described since the last phylogenetic analysis, are presented. The single most parsimonious phylogenetic tree with a consistency index of 87.5% suggests that Proctocaecum originated in Africa and spread to North America and South America before the breakup of Pangaea. As a result, the 2 North American and 1 South American species are most closely related to different African members of the genus. African and Indo-Pacific species inhabit crocodylids; hence, the occurrence of North American species in alligatorids and chelonians and a South American species in alligatorids are the result of host switches.     

Phylogeography of the heavily poached African common pangolin (Pholidota,Manis tricuspis) reveals six cryptic lineages as traceable signatures of Pleistocene diversification

Knowledge on faunal diversification in African rainforests remains scarce. We used phylogeography to assess (i) the role of Pleistocene climatic oscillations in the diversification of the African common pangolin (Manis tricuspis) and (ii) the utility of our multilocus approach for taxonomic delineation and trade tracing of this heavily poached species. We sequenced 101 individuals for two mitochondrial DNA (mtDNA), two nuclear DNA and one Y‐borne gene fragments (totalizing 2602 bp). We used a time‐calibrated, Bayesian inference phylogenetic framework and conducted character‐based, genetic and phylogenetic delineation of species hypotheses within African common pangolins. We identified six geographic lineages partitioned into western Africa, Ghana, the Dahomey Gap, western central Africa, Gabon and central Africa, all diverging during the Middle to Late Pleistocene. MtDNA (cytochrome b + control region) was the sole locus to provide diagnostic characters for each of the six lineages. Tree‐based Bayesian delimitation methods using single‐ and multilocus approaches gave high support for ‘species’ level recognition of the six African common pangolin lineages. Although the diversification of African common pangolins occurred during Pleistocene cyclical glaciations, causative correlation with traditional rainforest refugia and riverine barriers in Africa was not straightforward. We conclude on the existence of six cryptic lineages within African common pangolins, which might be of major relevance for future conservation strategies. The high discriminative power of the mtDNA markers used in this study should allow an efficient molecular tracing of the regional origin of African common pangolin seizures.     

Haematoloechus danbrooksi n. sp. (Digenea: Plagiorchioidea) from Rana vaillanti from Los Tuxtlas,Veracruz, Mexico

Haematoloechus danbrooksi n. sp. from the lungs of Rana vaillanti in Veracruz state, Mexico, was found. The new species is most similar morphologically to H. medioplexus, H. parviplexus, and H. meridionalis in having a ventral sucker less than half the diameter of the oral sucker. It differs from these species by the extension of the vitellaria, which are shorter in the new species, and in the shape of the tegumental spines, which are blunt in the new species. It differs from all other known species of Haematoloechus in the distribution of the uterine loops that are arranged diagonally and that present several short, extracecal. longitudinal loops in the postacetabular region. The new species shows 1.2% sequence divergence in partial 28S sequence with respect to H. medioplexus, 1.1% with H. parviplexus. and 2.5% with H. meridionalis, sequence divergences complementing the morphological differences.     

The Tertiary history of the northern temperate element in the northern Latin American biota

The time of origin of cool-to-cold-temperate plants of northern affinities in the Latin American biota is unsettled. Two models have been proposed-a Paleogene origin from a once widespread temperate rain forest, and a Neogene origin by introductions from the north which is best supported by new evidence. Fourteen palynofloras of Tertiary age are now available from Mexico and Central America, in addition to numerous others from the southeastern United States and northern South America. Pollen of cool-temperate plants occurs in the Eocene of southeastern United States, but not in northern Mexico, central Panama, or northern South America. In the Miocene this pollen is sparse in deposits from Mexico and Guatemala, rare in Panama, and absent from northern South America. In the Pliocene pollen representing a diverse northern temperate element of ten genera is present in the Pliocene of southeastern Veracruz, Mexico, five in northeastern Guatemala, and two (Myrica, Salix) first appear in northern South America; Alnus and Quercus are added in the Pleistocene. This north-to-south and early-to-late pattern is consistent with the appearance of highlands in southern Central America and northern South America in the Neogene, closure of the isthmian marine portal between 3.5 and 2.5 Ma (million years ago), and the late Cenozoic cooling trend evident in the O/O-based paleotemperature curve.     

Pleistocene persistence and expansion in tarantulas on the Colorado Plateau and the effects of missing data on phylogeographical inferences from RADseq

Montane species endemic to the “sky islands” of the North American southwest were significantly impacted by changing climates during the Pleistocene. We combined mitochondrial and genomic data with species distribution modelling to determine whether Aphonopelma marxi, a large tarantula from the nearby Colorado Plateau, was similarly impacted by glacial climates. Genetic analyses revealed that the species comprises three main clades that diverged in the Pleistocene. A clade distributed along the Mogollon Rim appears to have persisted in place during glacial conditions, whereas the other two clades probably colonized central and northeastern portions of the species' range from refugia in canyons. Climate models support this hypothesis for the Mogollon Rim, but late glacial climate data appear too coarse to detect suitable areas in canyons. Locations of canyon refugia could not be inferred from genomic analyses due to missing data, encouraging us to explore the effect of missing loci in phylogeographical inferences using RADseq. Results from analyses with varying amounts of missing data suggest that samples with large amounts of missing data can still improve inferences, and the specific loci that are missing matters more than the number of missing loci. This study highlights the profound impact of Pleistocene climates on tarantulas endemic to the Colorado Plateau, as well as the mixed nature of the region's fauna. Some animals recently colonized from nearby deserts as glacial climates receded, whereas others, like tarantulas, appear to have persisted on the Mogollon Rim and in refugia associated with the region's famous river‐cut canyons.     

Canid Coprolites from the Late Pleistocene of Hidalgo,Central Mexico: Importance for the Carnivore Record of North America

We present the first reported occurrence of canid coprolites from the late Pleistocene of central Mexico. The sample consists of five associated coprolites recovered from Quaternary deposits that crop out in southeastern Hidalgo, central Mexico. The material shows several of the typical features of canid feces, including elongated cylindrical shape, uncommon and nondistinct constrictions, and one tapered end. The coprolites are similar in size to feces of North American foxes, such as Vulpes macrotis, V. lagopus, V. vulpes, and Urocyon cinereoargenteus; likewise, their size might be comparable to those of the Pleistocene canid Canis cedazoensis. The content of the studied coprolites consists of numerous teeth and bone fragments referable to the pocket gophers Pappogeomys or Cratogeomys. The coprolite content is related to a mostly carnivorous diet comparable to that of C. cedazoensis, wolves (Canis lupus, C. rufus, and C. dirus), and some foxes (V. macrotis and V. velox). As a result, it is proposed that the potential trace maker of the coprolites could be a form similar to a carnivorous fox or a small dog. These trace fossils represent the first indirect evidence of canids in the late Pleistocene of Hidalgo and provide additional information regarding the geographic distribution of the Canidae in temperate areas of North America that now are part of central Mexico during the second half of the Pleistocene.     

Geographic patterns of genetic diversity in Poulsenia armata (Moraceae): implications for the theory of Pleistocene refugia and the importance of riparian forest

Abstract. Tropical forests are species-diverse communities, but we know very little about the geographical distribution of genetic diversity within a species. During the late Pleistocene, lower temperatures and rainfall reduced the distribution of tropical wet forests, and in Central America lowland species may have been limited to riparian habitats. Approximately 12,000 years bp , temperature and rainfall increased in Central America, the distribution of wet forest species expanded, and today the distribution of some species extends into southern Mexico. The distribution of genetic diversity, based on RAPD markers, among ten populations of Poulsenia armata (Miq.) Standl. (Moraceae) suggests that these populations did not originate from a single refugium or region in the late Pleistocene. The Central American populations had high genetic diversity and unique bands giving support to the hypothesis that populations of P. armata occurred in Central American during the late Pleistocene. The majority of genetic diversity was partitioned among populations and there was no geographical relationship among populations, suggesting that these populations were isolated for a long period and there has been little gene flow. Populations of P. armata may have persisted in riparian zones along the Caribbean coast during the late Pleistocene. Given that riparian forest can support high levels of biodiversity in ecological time, and they have played an important role during periods of climate change over geological time, their conservation is of utmost importance particularly with the threat of a rapid shift in climatic patterns.     

Anthropo-entomophagy: Cultures, evolution and sustainability

Environmental cycles and human factors have altered ecosystems throughout the world. Natural resources have acquired high value because they are important to life and the survival of human beings. Among these resources are edible insects. They have many important features and, to date, up to 2086 species are consumed by 3071 ethnic groups. Rural people, who primarily search, gather, fix, commercialize and store this important natural resource, do not exterminate them. This is because rural people exploit only the central part of the insects' population curves. Nonetheless, some species are overexploited. Anthropo-entomophagy (eating of insects by humans) constitutes a major source of nutrition and these foods are eaten in 130 countries, with the African and American continents being the most entomophagous until now. It exists in protocultures (care is given to the edible insect species) and formal cultures, such as in Mexico, which date back to prehisphanic times. According to anthropologists the "saving gene theory" is based on insect ingestion, which, since the Paleolithic era, has given human beings reproductive success. The evolution of anthropo-entomophagy has been achieved in many ways, from the point of view of collection, fixing, marketing and consumption, and for the insects' organoleptical qualities. The sustainability of these species is fundamental; therefore, it is necessary to take certain measures for species conservation. In Mexico, more than 100 species of edible insects have been tested for their sustainability over 500 years, from the Spanish conquest to the present.     

Digeneans (Plathelminthes: Trematoda) of seven sympatric species of anurans from Los Tuxtlas,Veracruz, Mexico

Digeneans of sympatric Bufo marinus, B. valliceps, Hyla picta, H. ebraccata, Smilisca baudini, Rana berlandieri, and R. vaillanti from Los Tuxtlas, Veracruz, Mexico, are reported. A total of 7 adult trematode species and 3 unidentified metacercariae was found in the different host species examined: Gorgoderina attenuata, G. parvicava, Cephalogonimus americanus, Haematoloechus medioplexus, Glypthelmins californiensis, Mesocoelium monas and Langeronia macrocirrus. Prevalence, mean intensity and abundance of the trematodes in each host species are given.     

The history and geography of diversification within the butterfly genus Lycaeides in North America

The Lycaeides butterfly species complex in North America consists of two nominal, morphologically defined species. These butterflies are ecologically diverse and appear to be distributed as a geographically complex mosaic of locally differentiated populations that may be undergoing adaptive radiation. We asked whether patterns of molecular genetic variation within the species complex are congruent with currently recognized morphological species and whether the distribution of molecular variation is consistent with the hypothesis that Pleistocene climate changes contributed to the process of differentiation within the genus. Variation in the form of the genitalia from 726 males from 59 populations clearly distinguishes both species with only six populations containing morphologically intermediate or ambiguous individuals. However, partitioning of molecular variance in a 236 bp section of the mitochondrial AT-rich region from 628 individuals (57 populations) surveyed using single strand conformation polymorphism analysis (SSCP) indicates that only 26% of the total genetic variation is distributed along nominal species boundaries as defined by morphology. Instead, three phylogeographical groups were detected, represented by three major haplotype clades, which account for 90% of the total genetic variance. Pleistocene glaciations appear to have fostered divergence during glacial maxima, while post-glacial range expansions created opportunities for gene exchange and reticulation along suture zones between geographical groups. Data presented here allow us to make inferences about the history of the species complex. However, evidence of ancestral polymorphism and reticulation limit our ability to define species boundaries based on mitochondrial DNA sequence variation.     

Phylogenetic relationships among North American Alosa species (Clupeidae)

A phylogeny of the six North American species in the genus Alosa , with representatives of three Eurasian species, was generated using mtDNA sequences. This was accomplished by obtaining sequences for three North American species and additional geographical sampling of the other three species. The subgenus Alosa , including the formerly recognized subgenus Caspialosa , formed a strongly supported monophyletic group. Alosa alabamae was part of a polytomy with Alosa sapidissima , which was interpreted to support the recognition of A. alabamae as an incipient, yet distinct, species. The subgenus Pomolobus was not recovered as a monophyletic group. Alosa chrysochloris was basal to all other Alosa , although this position was only weakly supported. Previous work had indicated that Alosa pseudoharengus and Alosa aestivalis are not reciprocally monophyletic, but additional sampling in this study did not detect any further cases of shared haplotypes between the two species. The phylogeny supports previous hypotheses that the evolution of North American Alosa species in the Gulf of Mexico ( A. chrysochloris and A. alabamae ) was the result of two independent events. First, the ancestor of A. chrysochloris was isolated in the Gulf of Mexico, likely by the close of the Suwannee Straits, and this was followed later by dispersal of the ancestor of A. alabamae around the Florida peninsula into the Gulf of Mexico sometime during or after the Pleistocene.     

The Pleistocene history of the sheepshead minnow (Cyprinodon variegatus): Non-equilibrium evolutionary dynamics within a diversifying species complex

The sheepshead minnow, Cyprinodon variegatus, is a widespread fish species that typically inhabits coastal tidal marsh and mangrove swamp environments, ranging from Cape Cod, Massaschusetts to northern Mexico and into the Caribbean. This wide range crosses several biogeographic boundaries which are coincident with genetic structuring within numerous species originating in the Pleistocene. In addition, the more northerly reaches of this species range have been further subject to the evolutionary consequences of Pleistocene glaciation due to local extinction and recolonization of formerly glaciated sites. C. variegatus thus provides an excellent vertebrate model system within which to test the extent of genetic differentiation among populations in a dominant coastal ecosystem and examine patterns of historical demography in populations distributed along a latitudinal gradient. Using mitochondrial control region and ND2 sequence data, we discovered monophyletic clades within C. variegatus with divergence times within the Pleistocene, and very low gene flow between most sites. Intraspecific genetic breaks appear to correspond broadly to biogeographic or oceanic boundaries. Pleistocene climate change appears to have had dramatic impacts on the size and distribution of populations within and near the glacial margins, but has also affected populations far from formerly glaciated regions.     

Genetic variation and taxonomic analysis of the subgenus Profundulus

The current taxonomy within the subgenus Profundulus was reviewed and at least five different species were recognized on the basis of unique genetic characters. Two of them are considered to be new species not yet described: one is known only from a single spring in the Tehuantepec basin (Mexico); the second extends mainly through springs in the Mixteca region of Mexico. The maximum Nei distances were found between P. oaxacae and the rest of the species belonging to this subgenus. Compared with the other Profundulus species, the new species from Mixteca also had high Nei values, which suggest separation of these species probably during the Miocene period. Therefore, the previously postulated old Central American origin of Profundulus is supported by our data. The mountain uplift that gave rise to the current division of Pacific and Atlantic rivers may be the reason for the current distribution pattern of the subgenus Profundulus . The sporadic presence of this subgenus in the headwaters of some Atlantic rivers has been interpreted as the result of fluvial captures during the Pleistocene period.     

Pleistocene expansion and connectivity of mesic forests inside the South American Dry Diagonal supported by the phylogeography of a small lizard*

Traditionally focused on Amazonian and Atlantic rainforests, studies on the origins of high Neotropical biodiversity have recently shifted to also investigate biodiversity processes in the South American dry diagonal, encompassing Chaco, Cerrado savannas, and Caatinga seasonally dry tropical forests. The plateau/depression hypothesis states that riparian forests in the Brazilian Shield in central Brazil are inhabited by Pleistocene lineages, with shallow divergences and signatures of population expansion. Moreover, riparian forests may have acted as a vegetation network in the Pleistocene, allowing gene/species flow across the South American dry diagonal. We tested these hypotheses using Colobosaura modesta, a small gymnophthalmid lizard from forested habitats in the Cerrado savannas and montane/submontane forests in the Caatinga. We conducted phylogeographic analyses using a multi-locus dataset, tested alternative demographic scenarios with Approximate Bayesian Computation, and also employed species delimitation tests. We recovered a history of recent colonization and expansion along riparian forests, associated with Pleistocene climate shifts, and the existence of a new species of Colobosaura restricted to the Serra do Cachimbo region. We also present evidence that riparian forests have provided an interconnected network for forest organisms within the South American dry diagonal and that Pleistocene events played an important role in their evolutionary history.     

New and Little Known Species of Loxandrus LeConte 1852 (Coleoptera: Carabidae) from North and South America

Three new species of beetles in the genus Loxandrus are described: L. straneoi from the southern United States, L. icarus from the Eastern United States, and L. quinarius from central Bolivia. Loxandrus icarus, inhabitant of wet lowland habitat, is unique among eastern North American species in having reduced flight wings. The only other North American species with reduced flight wings, L. omiltemi Allen & Ball, is known from temperate cloud forest habitat in Mexico. Loxandrus quinarius shares a striking phenetic similarity to some members of the African caelostomine genus Strigomerus Chaudoir, and with L. strigomeroides Straneo. Illustrations of the male genitalia of L. strigomeroides and L. mirei Straneo are presented here to assist in identification of these species. The distributional range of L. strigomeroides is newly noted to extend across the Amazon basin. Loxandrus inferus Allen is placed into synonymy under L. velocipes Casey.     

Small frogs get their worms first: the role of nonodonate arthropods in the recruitment of Haematoloechus coloradensis and Haematoloechus complexus in newly metamorphosed northern leopard frogs, Rana pipiens, and woodhouse's toads, Bufo woodhousii

Studies on the life cycles and epizootiology of North American frog lung flukes indicate that most species utilize odonates as second intermediate hosts; adult frogs become infected by ingesting odonate intermediate hosts. Newly metamorphosed frogs are rarely infected with these parasites, predominantly because they are gape-limited predators that cannot feed on large intermediate hosts such as dragonflies. We examined the role of the frog diet and potential intermediate hosts in the recruitment of the frog lung fluke, Haematoloechus coloradensis, to metamorphosed northern leopard frogs (Rana pipiens), Woodhouse's toads (Bufo woodhousii), and bullfrogs (Rana catesbeiana) from western Nebraska. Because of the uncertain validity of H. coloradensis as a distinct species from Haematoloechus complexus, morphological characters of both species were reevaluated and the life cycles of both species were completed in the laboratory. The morphological data on H. coloradensis and H. coimplexus indicate that they differ in their oral sucker to pharynx ratio, uterine loop distribution, and placement of vitelline follicles. However, in terms of their life cycles, both species are quite similar in their use of physid snails as first intermediate hosts, a wide range of nonodonate and odonate arthropods as second intermediate hosts, and leopard frogs and toads as definitive hosts. These results indicate that H. coloradensis and H. complexus are generalists at the second intermediate host level and might be able to infect newly metamorphosed leopard frogs and toads by using small nonodonate arthropods more commonly than other frog lung fluke species. Comparisons of population structure of adult flukes in newly metamorphosed leopard frogs indicate that the generalist nature of H. coloradensis metacercariae enables it to colonize young of the year leopard frogs more commonly than other Haematoloechus spp. that only use odonates as second intermediate hosts. In this respect, the generalist nature of H. coloradensis and H. complexus at the second intermediate host level is an avenue for the colonization of young of year frogs.