Microbial diversity, tolerance, and biodegradation potential of urban wetlands with different input regimes

Though microbial transformations are the primary mechanism of contaminant attenuation in wetlands, much remains to be known about microbial communities in urban wetlands. In this study, the microbial communities from urban wetlands with different runoff regimes (i.e., a contaminated remnant wetland, a constructed wetland, and a remnant wetland) were assessed for their capacity to attenuate and tolerate typical urban runoff pollutants. Results from denaturing gradient gel electrophoresis of 16S rRNA genes showed relatively high similarity in community composition among the wetlands. Community-level physiological profiles had similar results but exhibited within-site variation in both the contaminated remnant and remnant wetlands. All wetland communities were less tolerant to copper than 2,4-dichlorophenoxyacetic acid; however, the contaminated remnant wetland had the highest tolerance. All study wetlands had a limited capacity to biodegrade model chlorinated aromatic compounds (e.g., 2,4-dichlorophenoxyacetic acid and 3-chlorobenzoate). Though having different input regimes and contaminant exposure histories, the study wetlands were generally similar with respect to microbial community diversity and function. Additionally, the generally low capacity for these wetlands to biodegrade mobile chlorinated organic contaminants offers preliminary insight into the limited ecosystem services these wetlands may provide in urban environments.     

枯落物处理对格木林土壤碳氮转化和微生物群落结构的短期影响

以我国南亚热带格木人工纯林为研究对象,采用气压过程分离(BaPS)技术和磷脂脂肪酸(PLFAs)法研究了不同枯落物处理(对照、枯落物去除、枯落物加倍)下土壤碳氮转化速率和微生物群落结构的季节变化.结果表明:不同枯落物处理土壤呼吸和总硝化速率均呈现明显的季节动态,雨季显著高于旱季.枯落物处理初期,土壤呼吸和总硝化速率均随枯落物输入量的增加呈下降趋势,但随着枯落物处理时间的延长,二者随枯落物输入量的增加而增加.旱季不同枯落物处理土壤微生物PLFAs总量和各菌群PLFAs量均显著高于雨季,而雨季真菌PLFAs/细菌PLFAs明显高于旱季.在旱季,枯落物去除处理土壤微生物PLFAs总量、细菌PLFAs量、真菌PLFAs量和丛枝菌根真菌PLFAs量分别显著提高30.9%、28.8%、44.4%和31.6%.在雨季,枯落物去除处理细菌PLFAs量和丛枝菌根真菌PLFAs量分别显著降低10.6%和33.3%.土壤微生物群落结构受枯落物输入量处理和季节的双重影响,土壤微生物群落结构主要受土壤温度和铵态氮的影响.枯落物输入量处理在短期内显著影响了格木林土壤碳氮转化速率和微生物群落结构,这种影响因季节的不同而存在差异.     

Ericoid mycorrhizal colonization and associated fungal communities along a wetland gradient in the Acadian forest of Eastern Canada

Wetlands provide numerous ecosystem services, and ericaceous plants are important components of these habitats. However, the ecology of fungi associated with ericaceous roots in these habitats is poorly known. To investigate fungi associated with ericaceous roots in wetlands, ericoid mycorrhizal colonization was quantified, and fungal communities were characterized on the roots of Gaultheria hispidula and Kalmia angustifolia along two upland – forested wetland transects in spring and fall. Ericoid mycorrhizal colonization was significantly higher in the wetlands for both plant species. Both upland and wetland habitats supported distinct assemblages of ericaceous root associated fungi including habitat specific members of the genus Serendipita. Habitat was a stronger driver of ericoid mycorrhizal colonization and ericaceous root associated community composition than host or sampling season, with differences related to soil water content, soil nutrient content, or both. Our results indicate that ericaceous plant roots in forested wetlands are heavily colonized by habitat specific symbionts.     

Arbuscular mycorrhizal colonization of semi-aquatic grasses along a wide hydrologic gradient

The effect of soil flooding on arbuscular-mycorrhizal (AM) fungal colonization of wetland plants was investigated using Panicum hemitomon and Leersia hexandra , two semi-aquatic grasses (Graminaceae) that grow along a wide hydrologic gradient in Carolina bay wetlands of the southeastern US coastal plain. Three related investigations were conducted along the dry-to-wet gradient in these wetlands; a field survey of AM fungal root colonization in eight wetlands, monthly monitoring of colonization patterns in P. hemitomon over a growing season, and an inoculum potential bioassay of soils collected along the gradient. The field survey showed that AM fungal colonization was strongly negatively correlated with water depth, but colonization was present in most root samples. The monthly assessment indicated that AM fungal colonization was lowest in plots that were consistently wet but rose as some plots underwent seasonal drying. The inoculum potential assay of dry, intermediate, and wet soils performed under both dry and saturated conditions showed that soils that were wet for >1 yr had the same ability to form mycorrhizas in bait plants as those that had remained dry. These findings suggested that the lower degree of colonization in wet areas observed in the field survey was because of the presence of surface water rather than low numbers of mycorrhizal propagules in the soil. Overall, the results of these investigations show that flooding is partially but not totally inhibitory to AM fungal colonization of wetland grasses.     

Creating riverine wetlands: Ecological succession, nutrient retention, and pulsing effects

Successional patterns, water quality changes, and effects of hydrologic pulsing are documented for a whole-ecosystem experiment involving two created wetlands that have been subjected to continuous inflow of pumped river water for more than 10 years. At the beginning of the growing season in the first year of the experiment (1994), 2400 individuals representing 13 macrophyte species were introduced to one of the wetland basins. The other basin was an unplanted control. Patterns of succession are illustrated by macrophyte community diversity and net aboveground primary productivity, soil development, water quality changes, and nutrient retention for the two basins. The planted wetland continued to be more diverse in plant cover 10 years after planting and the unplanted wetland appeared to be more productive but more susceptible to stress. Soil color and organic content continued to change after wetland creation and wetlands had robust features of hydric soils within a few years of flooding. Organic matter content in surface soils in the wetlands increased by approximately 1% per 3-year period. Plant diversity and species differences led to some differences in the basins in macrophyte productivity, carbon sequestration, water quality changes and nutrient retention. The wetlands continued to retain nitrate–nitrogen and soluble reactive phosphorus 10 years after their creation. There are some signs that sediment and total phosphorus retention are diminishing after 10 years of river flow. Preliminary results from the beginnings of a flood pulsing experiment in the two basins in 2003–2004 are described for water quality, nutrient retention, aboveground productivity, and methane and nitrous oxide gaseous fluxes.     

Bottomland hardwood forest species responses to flooding regimes along an urbanization gradient

Urbanization alters stream hydrology, hence flooding frequency and duration in floodplain wetlands. Potential impacts include shifts in species composition and survival, making restoration and selection of wetland species difficult. Cephalanthus occidentalis, Fraxinus pennsylvanica, and Quercus shumardii seedlings were subjected to experimental flooding regimes typical of floodplain forests in rural and urban settings. Treatments included a rural flood regime with three 7-day floods, an Urban-short flood regime with six 4-day floods, and an Urban-long flood regime with six 10-day floods over a growing season. Specific responses, measured by stem length, leaf area, and leaf, stem, and root biomass, varied between species from different wetland indicator classes. C. occidentalis, a wetland obligate, was well adapted to both urban flooding regimes, whereas productivity of F. pennsylvanica, a facultative wetland species, and Q. shumardii, a facultative species, was significantly reduced by the Urban-long treatment. Growth rates also varied over time, indicating the importance of temporal flooding patterns on species productivity. Because urban flooding regimes directly and selectively alter species productivity, proper restoration methods in urbanizing environments should include species selection based on current and potential future hydrologic conditions and use of reference standards from reference sites subjected to similar urban hydrologic regimes.     

Moderate changes in nutrient input alter tropical microbial and protist communities and belowground linkages

We investigated the response of soil microbial communities in tropical ecosystems to increased nutrient deposition, such as predicted by anthropogenic change scenarios. Moderate amounts of nitrogen and phosphorus and their combination were added along an altitudinal transect. We expected microorganisms and microbial grazers (testate amoebae) to significantly respond to nutrient additions with the effect increasing with increasing altitude and with duration of nutrient additions. Further, we expected nutrients to alter grazer–prey interrelationships. Indeed, nutrient additions strongly altered microbial biomass (MB) and community structure as well as the community structure of testate amoebae. The response of microorganisms varied with both altitude and duration of nutrient addition. The results indicate that microorganisms are generally limited by N, but saprotrophic fungi also by P. Also, arbuscular mycorrhizal fungi benefited from N and/or P addition. Parallel to MB, testate amoebae benefited from the addition of N but were detrimentally affected by P, with the addition of P negating the positive effect of N. Our data suggests that testate amoeba communities are predominantly structured by abiotic factors and by antagonistic interactions with other microorganisms, in particular mycorrhizal fungi, rather than by the availability of prey. Overall, the results suggest that the decomposer system of tropical montane rainforests significantly responds to even moderate changes in nutrient inputs with the potential to cause major ramifications of the whole ecosystem including litter decomposition and plant growth.     

Nutrient addition affects AM fungal performance and expression of plant/fungal feedback in three serpentine grasses

Plant/soil microbial community feedback can have important consequences for species composition of both the plant and soil microbial communities, however, changes in nutrient availability may alter plant reliance on mycorrhizal fungi. In this research, we tested whether plant/soil community feedback occurs and if increased soil fertility altered the plant/soil community interactions. In two greenhouse experiments we assessed plant and AM fungal performance in response to different soils (and their microbial communities), collected from under three co-occurring plants in serpentine grasslands, and nutrient treatments. The first experiment consisted of two plant species (Andropogon gerardii, Sorghastrum nutans), their soil communities, and three nutrient treatments (control, calcium, N-P-K), while the second experiment used three plant species (first two and Schizachyrium scoparium), their soil communities collected from a different site, and two nutrient treatments (control, N-P-K). Plant/soil community feedback was observed with two of the three species and was significantly affected by nutrient enrichment. Negative Sorghastrum/soil feedback was removed with the addition of N-P-K fertilizer at both sites. Andropogon/soil feedback varied between sites and nutrient treatments, while no differential Schizachyrium growth relative to soil community was observed. Addition of N-P-K fertilizer to the nutrient poor serpentine soils increased plant biomass production and affected plant/soil community interactions. Calcium addition did not affect plant biomass, but was associated with significant increases in fungal colonization regardless of plant species or soil community. Our results indicate that nutrient enrichment affected plant/soil community feedback, which has the potential to affect plant and soil community structure.     

Linking soil process and microbial ecology in freshwater wetland ecosystems

Soil microorganisms mediate many processes such as nitrification, denitrification, and methanogenesis that regulate ecosystem functioning and also feed back to influence atmospheric chemistry. These processes are of particular interest in freshwater wetland ecosystems where nutrient cycling is highly responsive to fluctuating hydrology and nutrients and soil gas releases may be sensitive to climate warming. In this review we briefly summarize research from process and taxonomic approaches to the study of wetland biogeochemistry and microbial ecology, and highlight areas where further research is needed to increase our mechanistic understanding of wetland system functioning. Research in wetland biogeochemistry has most often been focused on processes (e.g., methanogenesis), and less often on microbial communities or on populations of specific microorganisms of interest. Research on process has focused on controls over, and rates of, denitrification, methanogenesis, and methanotrophy. There has been some work on sulfate and iron transformations and wetland enzyme activities. Work to date indicates an important process level role for hydrology and soil nutrient status. The impact of plant species composition on processes is potentially critical, but is as yet poorly understood. Research on microbial communities in wetland soils has primarily focused on bacteria responsible for methanogenesis, denitrification, and sulfate reduction. There has been less work on taxonomic groups such as those responsible for nitrogen fixation, or aerobic processes such as nitrification. Work on general community composition and on wetland mycorrhizal fungi is particularly sparse. The general goal of microbial research has been to understand how microbial groups respond to the environment. There has been relatively little work done on the interactions among environmental controls over process rates, environmental constraints on microbial activities and community composition, and changes in processes at the ecosystem level. Finding ways to link process-based and biochemical or gene-based assays is becoming increasingly important as we seek a mechanistic understanding of the response of wetland ecosystems to current and future anthropogenic perturbations. We discuss the potential of new approaches, and highlight areas for further research.     

Mycorrhizal suppression and phosphorus addition influence the stability of plant community composition and function in a temperate steppe

Nutrient enrichment can reduce ecosystem stability, typically measured as temporal stability of a single function, e.g. plant productivity. Moreover, nutrient enrichment can alter plant–soil interactions (e.g. mycorrhizal symbiosis) that determine plant community composition and productivity. Thus, it is likely that nutrient enrichment and interactions between plants and their soil communities co-determine the stability in plant community composition and productivity. Yet our understanding as to how nutrient enrichment affects multiple facets of ecosystem stability, such as functional and compositional stability, and the role of above–belowground interactions are still lacking. We tested how mycorrhizal suppression and phosphorus (P) addition influenced multiple facets of ecosystem stability in a three-year field study in a temperate steppe. Here we focused on the functional and compositional stability of plant community; functional stability is the temporal community variance in primary productivity; compositional stability is represented by compositional resistance, turnover, species extinction and invasion. Community variance was partitioned into population variance defined as community productivity weighted average of the species temporal variance in performance, and species synchrony defined as the degree of temporal positive covariation among species. Compared to treatments with mycorrhizal suppression, the intact AM fungal communities reduced community variance in primary productivity by reducing species synchrony at high levels of P addition. Species synchrony and population variance were linearly associated with community variance with the intact AM fungal communities, while these relationships were decoupled or weakened by mycorrhizal suppression. The intact AM fungal communities promoted the compositional resistance of plant communities by reducing compositional turnover, but this effect was suppressed by P addition. P addition increased the number of species extinctions and thus promoted compositional turnover. Our study shows P addition and AM fungal communities can jointly and independently modify the various components of ecosystem stability in terms of plant community productivity and composition.     

EFFECTS OF FLOODING AND NUTRIENT ENRICHMENT ON BIOMASS ALLOCATION IN ACER RUBRUM SEEDLINGS

A greenhouse experiment was conducted on Acer rubrum seedlings to evaluate the effects of flood frequency on production and allocation of biomass and to test the effects of N and P fertilization on production and allocation. Seedlings from the Dismal Swamp were subjected to three flood treatments (no flooding, intermittent flooding, and continuous flooding) and four enrichment treatments (no enrichment, N additions, P additions, and N + P additions). More continuous flooding resulted in less biomass production. Biomass increased during the study in all treatments except for root mass in the continuously flooded treatment. However, production of abundant adventitious roots compensated for the lack of normal root growth. Root/shoot ratios exhibited the greatest decreases in the continuously flooded plants. Plants with N + P added had significantly more leaf, stem, and total mass than the nonenriched plants four months into the study. The N + P additions had apparently compensated for the effects of flood stress in the continuously flooded plants by the end of the study. The fertilized seedlings accumulated higher concentrations of N and P, but their nutrient use efficiency (biomass production per unit nutrient absorbed) was lower than in the nonenriched plants. Acer rubrum seedlings survive flooded conditions through several adaptations; however, theirgrowth is slowed by continuous flooding.     

人工湿地对抗生素复合污染的净化效果及微生物群落响应

为研究人工湿地对氟喹诺酮类(FQs)、磺胺类(SFs)、四环素类(TCs)抗生素的净化性能及微生物群落的响应,以运行多年的单层及多层(3层、6层)基质结构的水平潜流入工湿地为对象,分别采用固相萃取-高效液相色谱法和高通量测序来检测抗生素含量和微生物菌落结构,分析对比分层结构湿地系统中3类8种抗生素的去除规律、对常规污染...     

南亚热带3种人工林土壤微生物生物量和微生物群落结构特征

以我国南亚热带格木、红椎和马尾松人工林为对象,采用氯仿熏蒸浸提法和磷脂脂肪酸法(PLFA)分析了林地土壤微生物生物量和微生物群落结构组成.结果表明: 林分和季节因素均显著影响土壤微生物生物量、总PLFAs量、细菌PLFAs量和真菌PLFAs量,且干季林分下的土壤微生物生物量、总PLFAs量、单个PLFA量均大于雨季.红椎人工林土壤微生物生物量碳(MBC)和总PLFAs量最高,而格木人工林土壤微生物生物量氮(MBN)最高.土壤pH值对土壤丛枝菌根真菌(16:1ω5c)的影响达到极显著正相关水平.土壤总PLFAs量、革兰氏阳性菌(G⁺)以及腐生真菌(18:2ω6,9c)、革兰氏阳性菌/革兰氏阴性菌(G⁺/G^-)与土壤有机碳、全氮和全磷显著相关,表明土壤有机碳、全氮、全磷含量是影响该地区土壤微生物数量和种类的重要因素.外生菌根真菌(18:1ω9c)和丛枝菌根真菌与土壤碳氮比值呈极显著相关.     

内蒙古高原典型草原区河漫滩湿地植物群落退化表征

草原区河流河漫滩草甸是生物多样性表现最充分和生物生产力最高的地段, 但由于过度放牧利用, 绝大部分草甸处于退化状态。该文以锡林河流域中游的河漫滩草甸为研究对象, 比较分析了围封保育湿地与放牧退化湿地的群落组成、地上生物量, 以及共有植物种的植株高度、节间长、叶长、叶宽, 土壤含水量、容重, 群落地下根量及根的分布, 土壤微生物生物量碳、氮的变化。结果表明: 1)放牧使得湿地植物群落优势种发生变化, 原有湿生植物逐渐向旱生化转变, 同时地上及地下生物量明显降低。2)退化湿地的植物呈现显著小型化现象。3)放牧退化湿地的土壤含水量较围封保育湿地低, 其垂直分布及地下根的垂直分布也发生变化。在低河漫滩, 土壤水分随土层的增加而增加, 根量也趋于深层化。但在高河漫滩湿地, 土壤含水量接近典型草原, 根未出现深层化分布趋势。4)放牧践踏引起土壤容重和土壤紧实度增加。5)放牧使得低河漫滩湿地土壤微生物生物量增加, 而在过渡区及高河漫滩湿地, 放牧使得土壤微生物生物量碳、氮含量显著降低。     

Microbial Population and Activity in Wetland Microcosms Constructed for Improving Treated Municipal Wastewater

The idea of using constructed wetlands for the treatment and improving of wastewater emerged in the second half of the last century. Despite relatively wide use of this environmentally friendly technology, relatively little is known about the microbial populations involved in biotransformation and removal of contaminants in this system. The aim of the current study was to investigate the assembly and function of microbial populations in vertical-flow constructed wetland microcosms designed to improve the quality of wastewater after activated sludge treatment. Also, the performance of 3-year-old wetland ponds was investigated. Even though the quality of the influent water was relatively high, improvement in water parameters such as coliform level, ammonia concentration, BOD, and TSS was observed. The performance of the wetland ponds was comparable to that of the microcosms. The microbial community composition of the biofilm formed on the surface of gravel particles in vegetated and plant-free microcosms was studied by denaturing gradient gel electrophoresis (DGGE) and sequencing of 16S rRNA gene fragments. Highly complex bacterial diversity was observed in the biofilm. Cluster analysis of DGGE patterns demonstrated that depth within the wetland microcosm has a stronger effect on microbial community composition of the biofilm formed on wetland matrix than vegetation. Measurements of fluorescein diacetate hydrolysis activity and nitrification potential revealed that hydrolytic activity was affected by both microcosm depth and vegetation presence, whereas nitrification potential was mostly influenced by depth. Resolving the bacterial assemblage of wetland biofilm, which often is considered a black box, will help to understand the interactions involved in the development of diverse and mature biofilm and its function.     

纳帕海高原湿地真菌群落多样性和组成的分布

【背景】位于滇西北的纳帕海高原湿地,是我国唯一的低纬度、高海拔、季节性半封闭型高原湿地。真菌在湿地生态系统的维持和稳定中发挥着特殊作用,然而关于纳帕海高原湿地真菌群落多样性和组成的研究目前仍无报道。【目的】对纳帕海高原湿地不同季节和土壤类型真菌群落多样性和组成及与环境因子的关系开展系统研究分析,促进对高原湿地微生物多样性的深入认识。【方法】采用荧光定量PCR和高通量测序技术,分析了纳帕海高原湿地不同季节和土壤类型中真菌的数量、群落多样性和组成及其与环境因子的关系。【结果】真菌数量级的变化对于人为干扰下的湿地土壤退化是敏感的响应指标。在真菌群落组成中,约有60%以上未确定的分类信息,40%有确定分类信息的包括6个门17个纲37个目53个科63个属,大部分分类信息集中在Ascomycota门,相对优势属为Gibberella。通过分类水平、OTU水平和β多样性分析比较,在纳帕海高原湿地整体真菌群落多样性和组成受季节变化影响不显著,但不同土壤类型的变化呈显著差异,推测是由于不同采样区植物根际效应和种类的影响。CCA (Canonical correlation analysis)分析表明,在不同采样区受不同土壤理化因子的影响。【结论】揭示了纳帕海高原湿地土壤真菌群落多样性和组成的区域特征,从微生物学角度进一步提出了对纳帕海高原湿地环境保护和恢复的重要性。     

基于MODIS的洞庭湖湿地面积对水文的响应

利用MODIS影像数据集提取了2000-2010年间的洞庭湖水面面积。结合城陵矶水位数据分析了10月-翌年5月洞庭湖水体湿地和洲滩湿地的面积变化。研究结果表明,洞庭湖水体湿地呈现明显减小的趋势。2010年2月、10月、12月较2000年2月、10月、12月相比,分别有29.98%、26.76%和9.02%水体湿地转化为洲滩湿地。城陵矶在24-26 m水位涨落的时序变化较大,使东洞庭湖草滩湿地提前出露。推迟淹没,洲滩湿地裸露时间延长,亦将导致低海拔的草滩湿地向芦苇滩湿地的演变。洞庭湖湿地面积的变化是三口、四水来水减少、降雨减少等多方因素共同作用的结果,而三峡在9-10月间蓄水,将进一步加重湿地洲滩化的趋势     

Soil Water Content and Organic Carbon Availability Are Major Determinants of Soil Microbial Community Composition

Exploration of environmental factors governing soil microbial community composition is long overdue and now possible with improved methods for characterizing microbial communities. Previously, we observed that rice soil microbial communities were distinctly different from tomato soil microbial communities, despite management and seasonal variations within soil type. Potential contributing factors included types and amounts of organic inputs, organic carbon content, and timing and amounts of water inputs. Of these, both soil water content and organic carbon availability were highly correlated with observed differences in composition. We examined how organic carbon amendment (compost, vetch, or no amendment) and water additions (from air dry to flooded) affect microbial community composition. Using canonical correspondence analysis of phospholipid fatty acid data, we determined flooded, carbon-amended (+C) microcosm samples were distinctly different from other +C samples and unamended (–C) samples. Although flooding without organic carbon addition influenced composition some, organic carbon addition was necessary to substantially alter community composition. Organic carbon availability had the same general effects on microbial communities regardless of whether it was compost or vetch in origin. In addition, flooded samples, regardless of organic carbon inputs, had significantly lower ratios of fungal to bacterial biomarkers, whereas under drier conditions and increased organic carbon availability the microbial communities had higher proportions of fungal biomass. When comparing field and microcosm soil, flooded +C microcosm samples were most similar to field-collected rice soil, whereas all other treatments were more similar to field-collected tomato soil. Overall, manipulating water and carbon content selected for microbial communities similar to those observed when the same factors were manipulated at the field scale.     

Nutrient additions to wetlands in the Interlake region of Manitoba,Canada: effects of periodic additions throughout the growing season

The Interlake region of central Manitoba is characterized by numerous shallow, relatively unproductive wetlands. Typically, these wetlands are poorly utilized by breeding waterfowl in spite of generally reliable water conditions during spring and summer. Nutrient additions were made throughout the growing season to 18 PVC enclosures installed in a low productivity wetland near Lundar, Manitoba. Inorganic phosphorus (as H₃PO₄) and nitrogen (as NH₄NO₃) were added at bi-weekly intervals during the summer of 1988 at target rates of 0 and 0, 30 and 800, and 60 and 1600 µg 1^–1 (P and N respectively). Algal and invertebrate communities were monitored from mid-June to September, 1988. Phytoplankton, epiphytic periphyton and metaphyton communities demonstrated significant increases in biomass over the treatment period. No significant differences in epipelon community biomass were noted. An examination of several indicators of nutrient deficiency indicated that algal productivity was moderately to severely limited in all enclosures, with little or no mitigative effects noted due to nutrient addition treatment. No significant differences in numbers or biomass of total invertebrates or invertebrate functional groups attributed to fertilization were observed. Nutrient additions did increase community productivity, however the levels used in this study were insufficient to yield a sustained increase in primary or secondary productivity.