Efficiency of different methods of extracting the rice root nematode Hirschmanniella oryzae from rice and wheat soil and root samples

The nematode extraction method of centrifugal-floatation proved to be more efficient and significant (p ≤ 0.01) in extracting the rice root nematode, Hirschmanniella oryzae adults and larvae from soil or roots of rice and wheat crops than those extracted by sieving and tissue paper filtration technique. The extracted nematode from rice roots using incubation method is time-dependent and the peak of nematodes occurred four days after incubation. The number of extracted nematode varied according to crop, nematode mobility in soil particles, the number of nematodes present and tissue paper permeability.     

Extraction Efficiency of Belonolaimus longicaudatus from Sandy Soil

Numbers of Belonolaimus longicaudatus extracted from sandy soils (91-92% sand) by sieving and centrifugation were only 40-55% of those extracted by sieving and incubation on a Baermann tray. Residues normally discarded at each step of the sieving plus Baermann tray extraction procedure were examined for nematodes to obtain estimates of extraction efficiencies. For third-stage and fourth-stage juveniles, males, and females, estimates of extraction efficiency ranged from 60 to 65% in one experiment and 73 to 82% in another. Estimated extraction efficiencies for second-stage juveniles were lower (33% in one experiment, 67% in another) due to losses during sieving. When sterilized soil was seeded with known numbers of B. longicaudatus, 60% of second-stage juveniles and 68-76% of other stages were recovered. Most stages of B. longicaudatus could be extracted from these soils by sieving plus Baermann incubation with an efficiency of 60-70%.     

Extraction of nematodes from Dry Valley Antarctic soils

Nematode density and taxonomic composition from Dry Valley soil processed by the sugar centrifugation (SC) method in Antarctica was compared to those extracted from soils shipped frozen to the USA and processed by either the SC or Baermann Funnel (BF) (at 5°C and 10°C) techniques. Soil selected for the extraction comparisons represented a wide range of soil properties found in the Dry Valleys. More nematodes were recovered from freshly collected Antarctic soil and from stored frozen soil using the SC technique than from BF at either temperature (P<0.05). Temperature had no effect on nematode densities extracted by the BF. Scottnema lindsayae was the most abundant species recovered by all extraction methods, but recovery was significantly lower from stored soils. Thus, nematodes can be extracted qualitatively following frozen storage using SC, but quantitative studies of nematode populations should be based on soils extracted following field sampling.     

The relationship between soil pH and population level of Pratylenchus loosi in tea plantations of Iran

Tea root lesion nematode, Pratylenchus loosi, is one of the most important crop pests in Iran, which causes loss in quantity and quality of tea. This study was carried out to identify the relationship between soil pH and population level of P. loosi. One hundred and eighty-three soil and root samples were taken randomly from all of the tea plantations in Iran. The nematodes were extracted from root samples with Coolen and d’Herd methods and from soil samples by sieving and centrifugation. Soil pH was measured by two methods: 1:1 dilution of soil:deionised water and 1:1 dilution of soil:dilute calcium chloride 0.01?M (Cacl₂) solution. Range of mean population of P. loosi per gram of root was 0.66–884 and per 100?g of soil was 1–186 in all samples. The highest population of P. loosi was observed at pH 3.5–4.5 as if 71.33% of infested samples were observed at soil pH 3.5–4.5. The results of regression analyses showed that at pH ranges between 3.5 and 4.5, there is a correlation (P???0.05) between soil pH and mean population of nematode per gram of feeder roots. This study demonstrated that the population density and damage potential of this nematode likely increases at pH?<?4.5.     

Seasonal Fluctuations of Soil and Tissue Populations of Ditylenchus dipsaci and Aphelenchoides ritzemabosi in Alfalfa

Population dynamics of A. ritzemabosi and D. dipsaci were studied in two alfalfa fields in Wyoming. Symptomatic stem-bud tissue and root-zone soil from alfalfa plants exhibiting symptoms of D. dipsaci infection were collected at intervals of 3 to 4 weeks. Both nematodes were extracted from stem tissue with the Baermann funnel method and from soil with the sieving and Baermann funnel method. Soil moisture and soil temperature at 5 cm accounted for 64.8% and 61.0%, respectively, of the variability in numbers of both nematodes in soil at the Big Horn field. Also at the Big Horn field, A. ritzemabosi was found in soil on only three of the 14 collection dates, whereas D. dipsaci was found in soil on 12 dates. Aphelenchoides ritzemabosi was found in stem tissue samples on 9 of the 14 sampling dates whereas D. dipsaci was found on all dates. Populations of both nematodes in stem tissue peaked in October, and soil populations of both peaked in January, when soil moisture was greatest. Numbers of D. dipsaci in stem tissue were related to mean air temperature 3 weeks prior to tissue collection, while none of the climatic factors measured were associated with numbers of A. ritzemabosi. At the Dayton field, soil moisture plus soil temperature at 5 cm accounted for 98.2% and 91.4% of the variability in the soil populations of A. ritzemabosi and D. dipsaci, respectively. Aphelenchoides ritzemabosi was extracted from soil at two of the five collection dates, compared to extraction of D. dipsaci at three dates. Aphelenchoides ritzemabosi was collected from stem tissue at six of the seven sampling dates while D. dipsaci was found at all sampling dates. The only environmental factor that was associated with an increase in the numbers of both nematodes in alfalfa stem tissue was total precipitation 1 week prior to sampling, and this occurred only at the Dayton field. Numbers of A. ritzemabosi in stem tissue appeared to be not affected by any of the environmental factors studied, while numbers of D. dipsaci in stem tissue were associated with cumulative monthly precipitation, snow cover at time of sampling, and the mean weekly temperature 3 weeks prior to sampling. Harvesting alfalfa reduced the numbers of A. ritzemabosi at the Big Horn field and both nematodes at the Dayton field.     

Comparative study on the host susceptibility of different banana cultivars to plant parasitic nematodes in Malappuram district of Kerala,India

Six cultivars of banana grown widely in Malappuram district of Kerala were evaluated for the diversity of plant parasitic nematodes in their respective rhizosphere. The genotypes evaluated include Nendran, Poovan (Mysore), Njali poovan, Mysore poovan, Chenkadali and Ponnan. The study aims on a comparative analysis of rhizosphere of different banana varieties for the occurrence of plant parasitic nematodes, diversity, frequency of occurrence and to determine the most vulnerable type of banana variety. Cobb’s decanting and sieving method was used to isolate nematodes from soil. Thirty three samples randomly collected from different blocks of Malappuram district are subjected to analysis and a ten species of nematodes were reported. Among the six varieties analysed both Nendran and Mysore Poovan variety seems to be more susceptible to phytoparasitic nematodes. With respect to eight blocks of Malappuram district, Helicotylenchus sp. shows highest prominence value followed by Radopholus similis, reniform nematode and Meloidogyne incognita.     

Nematodes associated with the rhizosphere of corn (Zea mays L.)

The research was carried out during 1999 in 8 different localities in Northern Italy. The nematodes were extracted from soil samples of rhizosphere of corn plants (Zea mays L.). The objective of the study was to investigate plant-parasite nematodes associated with maize. Some phytophagous genera are common pests of this crop and its yield-loss are often due to their high densities. In addition the nematode community was investigated for the genus composition, the trophic structure and its biodiversity. After the extraction from soil with a Bearmann funnel and Ludox centrifugation, nematodes were identified at genus level. They belonged to 22 families and 45 different genera. The genus Rhabditis, Pratylenchus, Helicotylenchus and Acrobeloides made up more than 70% of the total nematodes collected. The dominant trophic group was the bacterial feeders (61%) in particular Rhabditis, that was the most abundant and often the dominant one. Phytophagous represented in almost all fields more than 30% of the total nematodes. In all the examined sites biodiversity was quite low, being the H' values no more than 1.08. The data indicates a high level of disturbance. In some localities high densities of Helicotylenchus and Pratylenchus were found. While these nematodes have been identified as being potentially harmful for corn plants in our latitudes, especially in light soils, this research could give an indication for further monitoring studies regarding plant parasitic nematodes of corn crops. This data is particularly important considering that methyl bromide, often used in Italian agriculture against soil pathogens, has been banned since the beginning of 2005.     

Response of soil nematode community structure and diversity to long-term land use in the black soil region in China

Soil nematodes are sensitive to environmental changes and are used widely as indicators of soil conditions. The community structure and diversity of soil nematodes were studied in different long-term land use regimes in the black soil area in Northeast China. The land use regimes were maintained for 22?years, and included crop land (CL), grass land (GL) and bare land (BL). Soil samples were taken throughout the growing season, and nematodes were extracted and identified. A total of 39 nematode genera with relative abundance over 0.1?% were identified. Heterodera was the dominant genus in CL; Boleodorus was the dominant genus in GL, and Boleodorus, Eucephalobus and Filenchus were the dominant genera in BL. Land use had a significant effect on abundance of all soil nematode tropic groups and ecological indices. Sampling time had an effect on soil nematode abundance, but only on three of the eight nematode ecological indices MI (maturity index of free-living nematode), CI (channel index) and EI (enrichment index). SR (species richness index) was highest in GL where plant species diversity was also high. The CI was the highest in BL among three land uses, which means the soil food web dominated, with fungal decomposition channels in BL. Soil nematode community structure and diversity was shown to be an effective and informative tool for analyzing ecological aspects of land use in black soil regions. The data are inconclusive as to whether the effect of land use on soil nematode parameters is direct, or indirect via inducing changes in soil physicochemical properties.     

Tests for transmission of cherry leaf roll virus using Longidorus, Paralongidorus and Xiphinema nematodes

The ability of 10 nematode species to transmit three strains of cherry leaf roll virus (CLRV) was tested by three methods: (1) virus-infected source plants and virus-free bait plants were grown concurrently in nematode-infested soil, (2) as for (1) but virus source plants were removed before bait plants were planted, and (3) nematodes were extracted from soil after access to virus source plants, and were added to pots containing bait plants. The occurrence of galls on roots showed that nematodes fed both on source and on bait plants in all experiments and, in some experiments, CLRV was detected by direct assays (slash tests) of Longidorus elongatus, L. leptocephalus and Paralongidorus maximus. Although the nematodes readily transmitted control viruses, for which they are known to be vectors, CLRV was detected by root assays in only a few bait plants exposed to L. elongatus, L. macrosoma, Xiphinema diversicaudatum or L. leptocephalus + X. vuittenezi in tests by method 1. The recovery of CLRV in these tests is interpreted as being due to contamination. These results add to the increasing circumstantial evidence against the involvement of nematodes in the transmission of CLRV. Other possible mechanisms of spread are discussed.     

Effects of Storage Temperature and Extraction Procedure on Recovery of Plant-parasitic Nematodes from Field Soils

Storage of nematodes in soil at -15 C for 1 to 16 weeks greatly increased nematode recovery by a sugar-flotation-sieving procedure. One week of exposure to -15 C killed all nematodes except Pratylenchus zeae and Tylenchorhynchus claytoni which were recoverable in decreasing numbers up to 10 weeks by the Baermann funnel method. Optimum storage temperature for survival of most nematode species was 13 C. The numbers of Meloidogyne incognita, T. claytoni, Belonolaimus Iongicaudatus, and P. zeae recoverable by either extraction method remained constant or increased when stored at 13-24 C for 16 weeks. This was also true for Helicotylenchtts dihystera and Xiphinema americanum extracted by the Baermann funnel technique, whereas the numbers retrieved by the sugar-flotation-sieving method decreased slightly. All species except T. claytoni decreased appreciably in soil stored at 36 C.     

Vertical distribution of soil nematodes in an age sequence of <Emphasis Type="Italic">Caragana microphylla</Emphasis> plantations in the Horqin Sandy Land,Northeast China

The vertical distribution of soil nematodes down to a depth of 50 cm was studied in an age sequence of 0-, 5-, 10-, and 22-year-old Caragana microphylla plantations (treatments) in the Horqin Sandy Land, Northeast China. The abundances and generic compositions of nematode fauna in five soil layers (0–10, 10–20, 20–30, 30–40, and 40–50 cm) were analyzed. 42 genera were observed in the nematode suspensions, and Acrobeles was the dominant genus in all treatments. The results showed that the total number of nematodes and the generic diversity in an age sequence of C. microphylla plantations decreased with increasing soil depth. Significant differences in the numbers of total nematodes, bacterivores (BF), plant parasites (PP), and omnivores–predators (OP) were observed between treatments and depths. BF was the most abundant trophic group in our study, followed by OP. The numbers of OP showed an obviously increasing trend with increasing age of C. microphylla plantation. The vertical distribution of the soil nematode communities was related to gradual changes in soil chemical properties, and it indicated that C. microphylla plantations have played positive roles in improving soil environmental conditions and restoring desertified ecosystems in the Horqin Sandy Land. The ecological indices selected were influenced by plantation chronosequence but not by soil depth.     

The living strategy of nematophagous fungi

The infection structures, trophism, and ecological character of nematophagous fungi are reviewed in this article on the basis of data extracted from the literature and the most recent experiments conducted in this area. Traditionally, nematophagous fungi are classified into four groups according to their modes of attacking nematodes: nematode-trapping fungi using adhesive or mechanical hyphal traps, endoparasitic fungi using their spores, eggparasitic fungi invading nematode eggs or females with their hyphal tips, and toxin-producing fungi immobilizing nematodes before invasion. In the present review, we focus on the first two groups. The living strategies of these nematophagous fungi depend on the diversity of their infection structures, such as different traps and spore types, which determine the modes of infecting nematodes. The diversity of trophic modes of nematophagous fungi is an important prerequisite for fungal survival and activity in soil. The abundance and activity of Hirsutella rhossiliensis and H. minnesotensis, representatives of endoparasites and potential biocontrol agents against nematodes, are highly dependent on environmental factors. Comprehensive understanding of the survival and activity of nematophagous fungi in soil is fundamental for the exploitation of these fungi as successful biocontrol agents.     

吉林省中西部平原区土壤线虫群落生态特征

于 2 0 0 3年 7月和 9月 ,在吉林省中西部平原区进行土壤线虫取样 ,10个采样区 2 8个调查样地 2次共捕获线虫 10 2 2 0只 ,个体密度平均 182 5 0只 /m2 ,分别隶属于线形动物门 2纲 7目 2 0科 32属。真滑刃属、短体属和垫刃属为优势类群 ,是吉林省中西部平原区土壤线虫群落最重要的类群 ,稀有类群个体数量尽管很少 ,但分布的范围并不狭小 ,线虫各类群空间分布的广狭与个体数量的多寡在吉林省中西部平原区并末呈现出明显的一致性。土壤线虫群落垂直分布 ,受人类活动扰动的生境土壤线虫类群数和个体密度表聚性较差 ,土壤线虫向土壤下层移动明显 ;水平分布 ,天然林和受人类活动扰动生境土壤线虫类群数和个体密度差异显著 ;农田土地利用方式对土壤线虫群落特征影响总体是负面的 ,而居民点园地可能增加土壤线虫的类群数和生物多样性。 PPI/MI值对于不同人类活动对土壤生态环境的变化反映更敏感     

Studies on a climosequence of soils in tussock grasslands

Nematodes were extracted and identified from tussocks growing on eight soil types (Conroy, Cluden, Tawhiti, Lammerlaw, Carrick, McKerrow, Obelisk, Harihari) from altitudes of 80–1550 m. Most soils were from schist parent material in Otago. Samples from the bottom 5 cm of the leaves and the 0–5‐cm and 8–12‐cm soil strata were analysed separately. Altogether 4455 specimens of nematodes were identified, and the percentage composition in each stratum was calculated. Seventy species were found; only 1 occurred at all sites, 22 were found at only 1 site; 28 occurred in all 3 strata, 18 in only 1 stratum. A strong site factor was noted in species distribution, and there was distinct stratification. Correlation coefficients were calculated for nematode abundance and diversity with altitude, rainfall, and chemical factors (pH, organic C, and soil N); calculations were also made for only six sites by omitting Lammerlaw and Harihari, which did not reflect stages in the climosequence. Considering the six sites, total numbers of nematodes decline with altitude, but numbers of species do not; numbers in 0–5‐cm soil are significantly positively correlated with pH, and negatively with organic C. The correlation with pH is not causal, but reflects a negative association of pH with both precipitation and altitude which tends to obscure relationships between nematodes and environmental factors. Paratylenchus sp. was dominant at the two driest sites; at the next site it was mixed with Macroposthonia, which occurred at the subsequent wetter sites; this distribution apparently reflects the resistant preadult stage of Paratylenchus. Most Dorylai‐moidea had a wide distribution, but Belondiroidea and Mononchoidea showed a preference for the wetter sites. Of the 70 species found, 30 were named and 18 were previously known from New Zealand, 6 appear cosmopolitan in distribution, 2 have Australian relationships, and 1 has Southern Hemisphere relationships.     

Availability of Fenamiphos and its Metabolites to Soil Water

Field and greenhouse experiments were conducted to determine the extent to which fenamiphos and its degradation products, fenamiphos sulfoxide and fenamiphos sulfone, are available to contact nematodes in the soil. Water extraction provided a relative measure of each chemical''s availability to the soil water where the chemicals could contact nematodes, and methanol extraction provided a relative measure of the total amount of each chemical present in the soil. Only small amounts of fenamiphos and fenamiphos sulfone could be extracted by water, even when much larger amounts were present in the soil. In contrast, virtually all of the fenamiphos sulfoxide present in the soil was extractable by water several days after nematicide application. Three days after fenamiphos (3EC) was applied at 6.7 kg a.i./ha to field plots, 6.4% of the fenamiphos, 14.4% of the fenamiphos sulfone, and 100% of the fenamiphos sulfoxide present in the soil was extracted by water. In greenhouse experiments with soil from these field plots, a 15G formulation of fenamiphos containing 98.7% fenamiphos and 1.3% fenamiphos sulfoxide was added to the soil. After an initial period of 3-4 days, the sulfoxide which formed by oxidation of fenamiphos became completely available for water extraction, whereas fenamiphos remained relatively unextractable by water. Fenamiphos sulfoxide is much more available to soil water, thus available for contact with nematodes, than are fenamiphos or fenamiphos sulfone. Based on this availability in water, it seems likely that fenamiphos sulfoxide is the major component for controlling nematodes.     

Caenorhabditis is a metazoan host for Legionella

We investigated whether nematodes contribute to the persistence, differentiation and amplification of Legionella species in soil, an emerging source for Legionnaires' disease. Here we show that Legionella spp. colonize the intestinal tracts of Caenorhabditis nematodes leading to worm death. Susceptibility to Legionella is influenced by innate immune responses governed by the p38 mitogen‐activated protein kinase and insulin/insulin growth factor‐1 receptor signalling pathways. We also show that L. pneumophila colonizes the intestinal tract of nematodes cultivated in soil. To distinguish between transient infection and persistence, plate‐fed and soil‐extracted nematodes‐fed fluorescent strains of L. pneumophila were analysed. Bacteria replicated within the nematode intestinal tract, did not invade surrounding tissue, and were excreted as differentiated forms that were transmitted to offspring. Interestingly, the ultrastructural features of the differentiated bacterial forms were similar to cyst‐like forms observed within protozoa, amoeba and mammalian cell lines. While intestinal colonization of L. pneumophila dotA and icmT mutant strains did not alter the survival rate of nematodes in comparison to wild‐type strains, nematodes colonized with the dot/icm mutant strains exhibited significantly increased levels of germline apoptosis. Taken together, these studies show that nematodes may serve as natural hosts for these organisms and thereby contribute to their dissemination in the environment and suggest that the remarkable ability of L. pneumophila to subvert host cell signalling and evade mammalian immune responses evolved through the natural selection associated with cycling between protozoan and metazoan hosts.     

Development of the magnetic capture system for recovery of Xiphinema americanum

Xiphinema americanum is listed as a quarantine nematode by The European Plant Protection Organisation because of its ability to transmit quarantine viruses. Detection of this nematode in soil samples, or in mixed nematode samples extracted from soil, is therefore of paramount importance. We recently described the use of magnetic beads (Dynabeads) in combination with probes such as lectins or antibodies for recovery of small endoparasitic nematodes including Meloidogyne spp. and Globodera rostochiensis from mixed nematode samples. Here we show that magnetic capture can be used with much larger nematodes such as X. americanum. We describe lectins and antisera that bind to the surface of this nematode and show that the antisera can be used in the Dynabeads system to recover and enrich X. americanum from mixed nematode samples.     

Persistence of Four Heterorhabditis spp. Isolates in Soil: Role of Lipid Reserves

Infective juveniles of four Heterorhabditis isolates (H. bacteriophora HI, H. megidis UK211 and HF85, and H. downesi M245) were stored in moist (pF 1.7) and dry (pF 3.3) loam soil at 20°C for up to 141 days. Survival, assessed by the number of nematodes extracted by centrifugal flotation, declined over time, reaching fewer than 18% alive by day 141 for all but one treatment (H. bacteriophora HI in dry soil). The infectivity of nematodes in soil for Tenebrio molitor also declined over time, roughly in accordance with the decline in numbers of nematodes. Energy reserves of extracted nematodes were assessed by image analysis densitometry. There were differences among isolates both in survival and in the depletion of reserves, and there was a significant correlation between these two parameters, suggesting that the extent to which energy reserves are depleted affects survival or that a common factor influences both. However, significant nematode mortality occurred while levels of reserves remained high, and the maximum reduction in utilizable body content for any treatment was 51%, well above starvation level. Therefore, the decline in numbers of living nematodes and the reduced nematode infectivity in soil cannot directly result from starvation of the nematodes. Survival and infectivity declined more rapidly in moist than in dry soil; one isolate, H. downesi M245, was less affected by soil moisture content than the other three isolates.     

Quantification of the slug parasitic nematode Phasmarhabditis hermaphrodita from soil samples using real time qPCR

Phasmarhabditis hermaphrodita is a nematode parasite that infects and kills several species of slugs. The nematode is produced commercially as a biological control agent for slug pests of agriculture and horticulture. Given the difficulties of distinguishing this species from other nematode species in soil samples, very little is known about its natural ecology or its behaviour and persistence following application for biological control. Here we describe a method to quantify P. hermaphrodita in soil samples based on real time PCR. We designed primers and a dual labelled fluorescent probe that can be used to quantify numbers of P. hermaphrodita and which is capable of distinguishing this species from the morphologically identical Phasmarhabditis neopapillosa. We compared different methods whereby the entire nematode community is extracted prior to DNA extraction, and three methods to extract DNA directly from soil samples. Both nematode extraction and DNA extraction from large (10 g) samples of soil gave reliable estimates of nematode numbers, but methods which extracted DNA from small (1 g or less) soil samples substantially underestimated numbers. However, direct extraction of DNA from soils may overestimate numbers of live nematodes as DNA from dead nematodes was found to persist in soil for at least 6 days. The technique could be modified for detection and quantification of all soil borne parasitic nematodes.