The equilibrium population size of a partially migratory population and its response to environmental change

A partially migratory population consists of non‐migrant and migrant individuals that share a common site during one period of the annual cycle. In this paper, we derive the expected equilibrium population sizes of migrants and non‐migrants and show how the abundance of one type is dependent on the other because their dynamics are coupled through density‐dependent effects. We present an approach for developing hypotheses about how changes in the environment will influence partially migratory populations and for formulating testable predictions about the effects of future changes on the proportions of migrants and non‐migrants. We apply this approach to a hypothesis put forward by Berthold that improved environmental conditions at the shared site will generally increase the number of non‐migrants and decrease the number of migrants, and to a study by Nilsson et al. which observed an increase in the number of migrants in a partially migratory blue tit Cyanistes caeruleus population in Sweden, but an overall maintenance of the proportion of migrants.     

The estimation of population size,migration rates and survival in a stratified population

Summary Estimates of survival, migration rates, and population size are developed for a triple catch marking experiment onn (n>-2) areas with migration among all areas and death in all areas occurring, but no recruitment (birth). This repressents the extension to three sampling times of the method ofChapman andJunge (1956) for estimates in a stratified population. The method is further extented to allow for ‘losses on capture’.     

Application of a cytochrome P-450 IA1-ELISA in environmental monitoring and toxicological testing of fish.

1. An enzyme-linked immunosorbent assay (ELISA) based on polyclonal rabbit anti-cod cytochrome P-450 IA1 IgG has been developed in our laboratory. 2. The antibodies employed in the ELISA demonstrate good cross-reactivity with the homologous protein in a number of other fish species, giving cross-reacting protein bands o 54-59 kDa in liver microsomes, as determined by Western blotting. 3. The ELISA technique has been used in numerous experiments with both field collected and laboratory exposed fish of different species, showing good correlation with contaminant exposure. 4. In some instances of PCB exposure where the classical P-450 IA1 monooxygenase assay 7-ethoxyresorufin O-deethylase (EROD) failed to reveal any induction, the ELISA technique demonstrated increased levels of P-450 IA1 protein, indicating inhibiting effects of the PCBs on EROD measurement. 5. In tissues like gill filaments, and in whole cod larvae, where EROD activity is barely detectable, if at all, the ELISA technique showed induction after exposure to a water soluble fraction (WSF) of North Sea crude oil. 6. The results reviewed indicate the usefulness of the ELISA technique to allow rapid screening of a large number of samples, and especially when catalytic measurement is difficult or impossible due to (a) small sample or tissue size, (b) loss of activities in bad storage conditions, or (c) presence of compounds inhibiting activity.     

Large recovery of fish biomass in a no-take marine reserve

No-take marine reserves are effective management tools used to restore fish biomass and community structure in areas depleted by overfishing. Cabo Pulmo National Park (CPNP) was created in 1995 and is the only well enforced no-take area in the Gulf of California, Mexico, mostly because of widespread support from the local community. In 1999, four years after the establishment of the reserve, there were no significant differences in fish biomass between CPNP (0.75 t ha(-1) on average) and other marine protected areas or open access areas in the Gulf of California. By 2009, total fish biomass at CPNP had increased to 4.24 t ha(-1) (absolute biomass increase of 3.49 t ha(-1), or 463%), and the biomass of top predators and carnivores increased by 11 and 4 times, respectively. However, fish biomass did not change significantly in other marine protected areas or open access areas over the same time period. The absolute increase in fish biomass at CPNP within a decade is the largest measured in a marine reserve worldwide, and it is likely due to a combination of social (strong community leadership, social cohesion, effective enforcement) and ecological factors. The recovery of fish biomass inside CPNP has resulted in significant economic benefits, indicating that community-managed marine reserves are a viable solution to unsustainable coastal development and fisheries collapse in the Gulf of California and elsewhere.     

Biosensor-based estimation of kinetic and equilibrium constants

The steady-state affinity constant for the interaction of glutathione S-transferase (GST) with anti-GST immunoglobulin (IgG) was determined by solution-phase equilibrium analysis. A Biacore concentration assay for the determination of free anti-GST IgG was employed giving a Kd value of 6.83 x 10(-10) M. A simple 1:1 solution-phase, equilibrium model approximated the data well. Furthermore, saturation studies showed a maximum occupation of approximately 50%. The choice of affinity-capture ligand, used to anchor anti-GST IgG to the hydrogel, influenced the interaction curves, as evidenced by contact-time-dependent dissociation-phase curves. This was apparent when performing the analysis on anti-mouse Fc-coated surfaces. When the interaction was conducted on a protein A-coated CM5 sensor chip, the interaction conformed well to ideal behavior and was selected for kinetic analysis of the GST interaction.     

An experiment of fish spillover from a marine reserve in Cuba

Several studies on adult fish movement from marine protected areas to zones open to fishing activity conclude spillover is present, but most of these investigations use indirect evidence and small-sized species of little commercial importance. This paper reports the effects of manipulating a density gradient on movements of large-sized and commercially-important fish across “Jardines de la Reina” Marine Reserve boundaries, using tagging methods and visual census. Tagging was carried out using dart tags and modified spearguns at an experimental and a control site. Density of fish was experimentally manipulated on the unprotected side of the boundary. Before experimental manipulation, fish density was similar in both experimental and control sites and on both sides of the boundaries. After manipulation, fish density in the unprotected side of experimental site declined dramatically and a strong gradient was established through the boundary. One month later, this forced gradient disappeared, returning to the situation at the beginning of the study. This last result is due to spillover effect: the mean distance traveled by fish increased 1.5 times (mean from below 200 m to more than 300 m), the mean emigration rate doubled and the immigration rate decreased, allowing density levels to recover after manipulation.     

Something in the water: biosecurity monitoring of ornamental fish imports using environmental DNA

The international trade in ornamental aquatic organisms represents an important vector in the spread of invasive species worldwide, but the accurate identification of imported organisms as part of a biosecurity surveillance program offers an opportunity to mitigate potential problems. Species level identification is historically conducted visually, and more recently, with the use of DNA barcoding. However, new diagnostic methods targeting extracellular environmental DNA (eDNA) can offer advantages over these approaches, being non-destructive and potentially more sensitive at low population densities of target organisms (e.g. in mixed consignments). Despite their recent introduction, techniques utilising eDNA are quickly becoming recognised as an important tool for invasion biologists and ecosystem managers. Here, we present a model for the development of a biosecurity protocol for ornamental fish identification using degraded eDNA molecules in water. We demonstrate how a DNA barcode reference library can be mined for informative short-length markers, and report repeatable and accurate detection at low densities of the target species. This study represents a framework for biosecurity agencies to develop eDNA procedures as an innovative management technique for routine surveillance of high risk imports. Future up-scaling of the method will open up prospects for long term monitoring of entire quarantine facilities for a variety of harmful species.     

Two fish species competition model with nonlinear interactions and equilibrium catches

Two species competition model is built up by assuming the hypothetical second order interactions in order to consider effects of exploitation on two competing fish species with non-linear interactions. Most important characteristic of this model, compared withLotka-Volterra type linear competition model, is that this model can possess multiple stable equilibrium points. Therefore there is a possibility that two species keeping the equilibrium state at one stable equilibrium point will be attracted to the other stable equilibrium point after a heavy perturbation. In this model reversible change of the fishing pressure does not always results in that of the equilibrium catch. In this sence MSY concept for single species can not be extended to this model. If there are multiple stable equilibrium points, the change of the dominant fish species, catastrophic and irreversible change of each equilibrium catch may be observed when the perturbation by the exploitation is added. This phenomenon immediately reminds us of the change of the dominant fish species between Japanese common mackerel and Pacific saury in the northwest Pacific Ocean. In case of the management of two competing fish species with nonlinear interactions, the consideration on the balance between the fishing pressure for each species may be as important as the decision on the catch limit for each species. MSY level for each species based on the single-species theory could be quite erroneous.     

The dose estimation to the population as a result of radioactive contamination of the Semipalatinsk Test area

The results are presented from estimation of spatial distribution of 137Cs and 90Sr contamination densities in the areas of horses and sheep grazing within the Semipalatinsk Test Site. Dose burdens to various cohorts of the population living within the STS and consuming contaminated animal products are predicted. Doses of shepherds in the most contaminated pasture areas have been found to exceed the accepted limit (1 mSv/y). The conclusion is made about the need for further studies on the risk assessment of the STS population exposure above the accepted limits.     

Toxic metals in freshwater fish from the Zagreb area as indicators of environmental pollution

The aim of this investigation was to determine the levels of heavy metals and metalloids in freshwater fish from the Zagreb area. A total of 216 freshwater fish samples from 5 sites were examined: Sava river upstream from Zagreb, Sava river at Zagreb, Sava river downstream from Zagreb, Jarun Lake, and 5 "ecologic" fishponds from the Zagreb surroundings. The metals lead, cadmium, mercury and the metalloid arsenic were determined by the method of atomic absorption spectrometry. The mean pooled levels of lead, cadmium and arsenic in all fish samples were 112.3 +/- 95 micrograms/kg, 8.5 +/- 11 micrograms/kg and 23.5 +/- 36 micrograms/kg, and did not exceed the allowed levels of 1,000 mg/kg, 100 micrograms/kg and 200 micrograms/kg, respectively. In 4 fish samples, the levels of mercury exceeded the allowed limit of 500 micrograms/kg (509, 596, 605 and 788 micrograms/kg), however, the pooled mean level of mercury was 127.8 +/- 90 micrograms/kg. There was no major difference in the levels of heavy metals between the two fish families observed, although the levels of lead, cadmium and mercury were higher in the family Ictaluridae (144 vs. 107 micrograms/kg, 10.4 vs. 8.2 micrograms/kg, and 153 vs. 124 micrograms/kg, respectively), whereas the level of arsenic was higher in the family Cyprinidae (23.8 vs. 21.8 micrograms/kg). Although the Sava river at Zagreb is the main recipient of sewage and wastewater in the Republic of Croatia, the levels of heavy metals were within the allowed limits in all groups of freshwater fish samples, with the exception of 4 samples that contained moderately elevated levels of mercury. Study results suggest that only mercury could be considered a good indicator of environmental pollution, because higher levels of mercury were measured in the fish from the Sava river than in the fish from the Jarun Lake and fishponds from the Zagreb surroundings, considering both pooleded and fish family specified data.     

Detection by PCR-enzyme-linked immunosorbent assay of Clostridium botulinum in fish and environmental samples from a coastal area in northern France

The prevalence of Clostridium botulinum types A, B, E, and F was determined in 214 fresh fish and environmental samples collected in Northern France. A newly developed PCR-enzyme-linked immunosorbent assay (ELISA) used in this survey detected more than 80% of samples inoculated with fewer than 10 C. botulinum spores per 25 g and 100% of samples inoculated with more than 30 C. botulinum spores per 25 g. The percent agreement between PCR-ELISA and mouse bioassay was 88.9%, and PCR-ELISA detected more positive samples than the mouse bioassay did. The prevalence of C. botulinum in seawater fish and sediment was 16.6 and 4%, respectively, corresponding to 3.5 to 7 and 1 to 2 C. botulinum most-probable-number counts, respectively, and is in the low range of C. botulinum contamination reported elsewhere. The toxin type identification of the 31 naturally contaminated samples was 71% type B, 22.5% type A, and 9.6% type E. Type F was not detected. The high prevalence of C. botulinum type B in fish samples is relatively unusual compared with the high prevalence of C. botulinum type E reported in many worldwide and northern European surveys. However, fish processing and fish preparation in France have not been identified as a significant hazard for human type B botulism.     

Towards a model of a floodplain fish population and its fishery

Synopsis A model is developed which describes the way in which the fish populations of African rivers and their fisheries are influenced by the different types of flood Regime. Ichthyomass and fish catch are dependent on both the extent of flooding during high water and the amount of water remaining in the system during the dry season. The relative number and individual weight of fish are determined by the intensity of flooding, whereas the total number surviving to the next year depends more on the low water regime. Catch per unit effort falls with increasing difference between areas flooded at high and low water. A negative log-log relationship exists between catch and the ratio of maximum area flooded to minimum area of water remaining in the system. This relationship of catch to flood ratio may form the basis for a general index for the evaluation of both year-to-year variations within a floodplain, and differences between floodplains. Lines of equal catch are also derived for various combinations of high and low water areas; these might be used as guidelines for the hydrological management of tropical flood-plains.     

Socioecology of a high-density brown hyaena population within an enclosed reserve

Understanding the spatial ecology of wildlife is an essential prerequisite for making informed management decisions and is of particular importance for those species residing in enclosed reserves where space use may be influenced by restricted dispersal and high population densities. As the brown hyaena Parahyaena brunnea is a species likely to increasingly rely on enclosed protected areas for its long-term persistence, due to the intense persecution experienced outside of protected areas, we examined the spatial ecology of 10 brown hyaenas from a high-density population, within a small (200 km2) enclosed reserve in north-central Namibia. Spatial data, in combination with camera trap data from communal den sites, suggested six clans and at least one nomadic individual in the reserve. A mean home range size of 37 km2 (± 21 km2, range 16–97 km2) was recorded, with 92% of the reserve utilized as brown hyaena home range. Whilst these home range sizes are some of the lowest recorded for brown hyaena, the degree of overlap between neighbouring clans was similar to that recorded for open systems. Given that the majority of the reserve is utilized as brown hyaena home range, options for dispersing subadults may be limited and these individuals may represent ideal candidates for translocation into other enclosed reserves as part of metapopulation management schemes.     

Extraordinary aggressive behavior from the giant coral reef fish, Bolbometopon muricatum, in a remote marine reserve

Human impacts to terrestrial and marine communities are widespread and typically begin with the local extirpation of large-bodied animals. In the marine environment, few pristine areas relatively free of human impact remain to provide baselines of ecosystem function and goals for restoration efforts. Recent comparisons of remote and/or protected coral reefs versus impacted sites suggest remote systems are dominated by apex predators, yet in these systems the ecological role of non-predatory, large-bodied, highly vulnerable species such as the giant bumphead parrotfish (Bolbometopon muricatum) has received less attention. Overfishing of Bolbometopon has lead to precipitous declines in population density and avoidance of humans throughout its range, contributing to its status as a candidate species under the U. S. Endangered Species Act and limiting opportunities to study unexploited populations. Here we show that extraordinary ecological processes, such as violent headbutting contests by the world's largest parrotfish, can be revealed by studying unexploited ecosystems, such as the coral reefs of Wake Atoll where we studied an abundant population of Bolbometopon. Bolbometopon is among the largest of coral reef fishes and is a well known, charismatic species, yet to our knowledge, no scientific documentation of ritualized headbutting exists for marine fishes. Our observations of aggressive headbutting by Bolbometopon underscore that remote locations and marine reserves, by inhibiting negative responses to human observers and by allowing the persistence of historical conditions, can provide valuable opportunities to study ecosystems in their natural state, thereby facilitating the discovery, conservation, and interpretation of a range of sometimes remarkable behavioral and ecological processes.     

Environmental diel variation, parasite loads, and local population structuring of a mixed-mating mangrove fish

Genetic variation within populations depends on population size, spatial structuring, and environmental variation, but is also influenced by mating system. Mangroves are some of the most productive and threatened ecosystems on earth and harbor a large proportion of species with mixed-mating (self-fertilization and outcrossing). Understanding population structuring in mixed-mating species is critical for conserving and managing these complex ecosystems. Kryptolebias marmoratus is a unique mixed-mating vertebrate inhabiting mangrove swamps under highly variable tidal regimes and environmental conditions. We hypothesized that geographical isolation and ecological pressures influence outcrossing rates and genetic diversity, and ultimately determine the local population structuring of K. marmoratus. By comparing genetic variation at 32 microsatellites, diel fluctuations of environmental parameters, and parasite loads among four locations with different degrees of isolation, we found significant differences in genetic diversity and genotypic composition but little evidence of isolation by distance. Locations also differed in environmental diel fluctuation and parasite composition. Our results suggest that mating system, influenced by environmental instability and parasites, underpins local population structuring of K. marmoratus. More generally, we discuss how the conservation of selfing species inhabiting mangroves and other biodiversity hotspots may benefit from knowledge of mating strategies and population structuring at small spatial scales.     

The estimation of population differentiation with microsatellite markers

Microsatellite markers are routinely used to investigate the genetic structuring of natural populations. The knowledge of how genetic variation is partitioned among populations may have important implications not only in evolutionary biology and ecology, but also in conservation biology. Hence, reliable estimates of population differentiation are crucial to understand the connectivity among populations and represent important tools to develop conservation strategies. The estimation of differentiation is c from Wright's FST and/or Slatkin's RST, an FST -analogue assuming a stepwise mutation model. Both these statistics have their drawbacks. Furthermore, there is no clear consensus over their relative accuracy. In this review, we first discuss the consequences of different temporal and spatial sampling strategies on differentiation estimation. Then, we move to statistical problems directly associated with the estimation of population structuring itself, with particular emphasis on the effects of high mutation rates and mutation patterns of microsatellite loci. Finally, we discuss the biological interpretation of population structuring estimates.     

Experimental estimation of mutation rates in a wheat population with a gene genealogy approach

Microsatellite markers are extensively used to evaluate genetic diversity in natural or experimental evolving populations. Their high degree of polymorphism reflects their high mutation rates. Estimates of the mutation rates are therefore necessary when characterizing diversity in populations. As a complement to the classical experimental designs, we propose to use experimental populations, where the initial state is entirely known and some intermediate states have been thoroughly surveyed, thus providing a short timescale estimation together with a large number of cumulated meioses. In this article, we derived four original gene genealogy-based methods to assess mutation rates with limited bias due to relevant model assumptions incorporating the initial state, the number of new alleles, and the genetic effective population size. We studied the evolution of genetic diversity at 21 microsatellite markers, after 15 generations in an experimental wheat population. Compared to the parents, 23 new alleles were found in generation 15 at 9 of the 21 loci studied. We provide evidence that they arose by mutation. Corresponding estimates of the mutation rates ranged from 0 to 4.97 x 10(-3) per generation (i.e., year). Sequences of several alleles revealed that length polymorphism was only due to variation in the core of the microsatellite. Among different microsatellite characteristics, both the motif repeat number and an independent estimation of the Nei diversity were correlated with the novel diversity. Despite a reduced genetic effective size, global diversity at microsatellite markers increased in this population, suggesting that microsatellite diversity should be used with caution as an indicator in biodiversity conservation issues.