The past,present and future of thermophilous Cyperus polystachyos Rottb. (Cyperaceae) on the island of Ischia (southern Italy)

Cyperus polystachyos is a hygrophilous, thermophilous and heliophilous plant with a punctiform distribution in southern Italy, where it is almost exclusively found on Ischia, an island in the Bay of Naples characterized by widespread volcanic hydrothermal activity. This species is a native of tropical and subtropical areas and there is evidence for ancient isolation events in the creation of its current distribution pattern. We have studied the historical literature available for this plant since 1800 and collected temporal and spatial presence data of this species in order to develop a habitat suitability map based on a GIS approach and using a multiple linear regression model. Moreover, we have used univariate and multivariate statistical analysis. The results show the importance of the environmental mosaic around fumaroles to preserve the species; urbanization and geothermal energy use of fumaroles in the past and the combination of abandonment of the typical agricultural system and the natural occurrence of reforestation in the present are the main causes of the decline in the number of populations.     

Plant remains from Sardinia,Italy with notes on barley and grape

This paper presents archaeobotanical results from Sardinia, an island in the western Mediterranean. The starting point is the material excavated at Duos Nuraghes near Borore, but remains provided by other sites are taken into account as well. Naked wheat, presumably a tetraploid wheat such as Triticum durum Desf. (macaroni wheat), and Hordeum vulgare L. (barley) are the most common finds from the Neolithic up to the Medieval period. Triticum dicoccum Schübl. (emmer), Lens culinaris Medik. (lentil), Pisum sativum L. (pea) and Vicia faba L. var. minor (horse bean) have been grown as well. A medieval context revealed Beta vulgaris L. (beet). The most common find in the category of fruits is Vitis vinifera L. (grape). The overall picture is one of continuity in agricultural practices. Nevertheless this picture may be false. In the early Bronze Age the cultivation of barley may have shifted from the naked variety towards the hulled variety. The Phoenicians may have introduced new cultivars of grapevine, although the native grapevine was not replaced by these. The weed taxa suggest some change in agriculture from Punic or Roman times onwards. Received August 10, 2001 / Accepted January 15, 2002     

A personal narrative of particular things: Tevau (feather money) from Santa Cruz,Solomon Islands

In October 2006, Salome Samou, from Santa Cruz Island, Solomon Islands, visited the British Museum, London, to see the collections from her home island. This paper presents her response to the tevau in the collection (frequently referred to as ‘feather money’). Tevau are objects of prestige and value, formerly used in a regional network of exchange. They were especially important in bridewealth payments, but have not been used on Santa Cruz Island since the 1980s. Today, Samou wants to revive their use, a re‐introduction that reflects a linkage of tevau and their manufacture to contemporary ideas of social identity. This paper explores Samou’s interaction with the tevau in the collection, including past interpretations of their use. For Samou, the process of viewing the tevau produced a narrative that embraced personal memories as well as challenged perspectives on past cultural and social practices. I discuss how these particular objects materialise transformed, and transforming, regimes of value.     

A population founded by a single pair of individuals: establishment,expansion, and evolution

Events occurring at the founding of a population, and in the next few generations, are potentially of great importance for the future evolution of the population. This study reports demographic, genetic, and morphological changes that took place during and after the colonization of the small Galápagos island of Daphne Major by three male and two female large ground finches, Geospiza magnirostris, at the end of 1982. Using assignment tests with microsatellite DNA data we demonstrate heterogeneity among the immigrants. Their sources included both a near island (Santa Cruz) and a far island (Marchena). However, almost all immigrants that stayed to breed were from an intermediate island (Santiago) and its satellites. Song may have been responsible for this selectivity. Mean heterozygosity stayed roughly constant over the next 15 years while allelic diversity almost doubled, after an initial decline, as the breeding population increased to a maximum of 30 pairs. Although close inbreeding occurred, with a reduction in heterozygosity, an expected net decline in heterozygosity did not occur, for two reasons: it was counteracted by continuing gene flow from immigrants at a low rate, and inbred birds (in one cohort) were at a selective disadvantage. An abrupt step-function shift in beak shape occurred after 9 years. Thus the study provides evidence of drift and selection causing morphological and genetic divergence in the establishment of a new population and in the first few generations.     

Reed frog diversification in the Gulf of Guinea: Overseas dispersal,the progression rule,and in situ speciation

Oceanic islands accumulate endemic species when new colonists diverge from source populations or by in situ diversification of resident island endemics. The relative importance of dispersal versus in situ speciation in generating diversity on islands varies with a number of archipelago characteristics including island size, age, and remoteness. Here, we characterize interisland dispersal and in situ speciation in frogs endemic to the Gulf of Guinea islands. Using mitochondrial sequence and genome‐wide single‐nucleotide polymorphism data, we demonstrate that dispersal proceeded from the younger island (São Tomé) to the older island (Príncipe) indicating that for organisms that disperse overseas on rafts, dispersal between islands may be determined by ocean currents and not island age. We find that dispersal between the islands is not ongoing, resulting in genotypically distinct but phenotypically similar lineages on the two islands. Finally, we demonstrate that in situ diversification on São Tomé Island likely proceeded in allopatry due to the geographic separation of breeding sites, resulting in phenotypically distinct species. We find evidence of hybridization between the species where their ranges are sympatric and the hybrid zone coincides with a transition from agricultural land to primary forest, indicating that anthropogenic development may have facilitated secondary contact between previously allopatric species.     

Disentangling the complex evolutionary history of the Western Palearctic blue tits (Cyanistes spp.) – phylogenomic analyses suggest radiation by multiple colonization events and subsequent isolation

Isolated islands and their often unique biota continue to play key roles for understanding the importance of drift, genetic variation and adaptation in the process of population differentiation and speciation. One island system that has inspired and intrigued evolutionary biologists is the blue tit complex (Cyanistes spp.) in Europe and Africa, in particular the complex evolutionary history of the multiple genetically distinct taxa of the Canary Islands. Understanding Afrocanarian colonization events is of particular importance because of recent unconventional suggestions that these island populations acted as source of the widespread population in mainland Africa. We investigated the relationship between mainland and island blue tits using a combination of Sanger sequencing at a population level (20 loci; 12 500 nucleotides) and next‐generation sequencing of single population representatives (>3 200 000 nucleotides), analysed in coalescence and phylogenetic frameworks. We found (i) that Afrocanarian blue tits are monophyletic and represent four major clades, (ii) that the blue tit complex has a continental origin and that the Canary Islands were colonized three times, (iii) that all island populations have low genetic variation, indicating low long‐term effective population sizes and (iv) that populations on La Palma and in Libya represent relicts of an ancestral North African population. Further, demographic reconstructions revealed (v) that the Canary Islands, conforming to traditional views, hold sink populations, which have not served as source for back colonization of the African mainland. Our study demonstrates the importance of complete taxon sampling and an extensive multimarker study design to obtain robust phylogeographical inferences.     

Virginia mallow (Sida hermaphrodita (L.) Rusby) as perennial multipurpose crop: biomass yields,energetic valorization,utilization potentials,and management perspectives

This article reviews the scholarly literature dealing with the perennial multipurpose crop Virginia mallow (Sida hermaphrodita (L.) Rusby; Sida in the following). In regions dominated by intensive agricultural management practices, growing Sida holds the potential to combine ecosystem services such as decreasing soil erosion, reducing nitrate leaching as well as enhancing biodiversity, with economic profit for the farmer. After promising biomass yields of Sida were reported from studies performed in Poland about 15 years ago, the interest in this plant species has continuously increased, and different utilization pathways were examined, predominantly by researchers in Poland and Germany. At present, however, a comprehensive overview that summarizes the different lines of research performed regarding the use of Sida is lacking. This review aims at closing this gap. After providing background information on Sida, we summarize the main results obtained from investigations concerning biomass yields, fertilization effects, key findings concerning direct combustion, biogas production, steam gasification, phytoremediation, and alternative utilization pathways. Thereafter, we highlight important aspects of Virginia mallow cultivation practices, including first estimates regarding the costs involved. Finally, we point to existing research gaps. Summarizing the available literature on Sida, we aim at raising the interest of scientists and farmers in this plant species further and to show where future research might tie in with, as the successful cultivation of Sida might represent a worthwhile strategy to transform current agricultural practices in Central Europe into approaches that are more sustainable and resilient against future challenges.     

Influence of agricultural practice on mobile bla genes: IncI1‐bearing CTX‐M,SHV, CMY and TEM in Escherichia coli from intensive farming soils

Many calls have been made to address antibiotic resistance in an environmental perspective. With this study, we showed the widespread presence of high‐level antibiotic resistant isolates on a collection of non‐susceptible Gram‐negative bacteria (n = 232) recovered from soils. Bacteria were selected using amoxicillin, cefotaxime and imipenem, from sites representing different agricultural practices (extensive, intensive and organic). Striking levels of non‐susceptibility were noticed in intensive soils for norfloxacin (74%), streptomycin (50.7%) and tetracycline (46.6%); indeed, the exposure to intensive agricultural practices constituted a risk factor for non‐susceptibility to many antibiotics, multidrug resistance and production of extended‐spectrum β‐lactamases (ESBL). Analyses of non‐susceptibility highlighted that environmental and clinical bacteria from the same species might not share the same intrinsic resistance patterns, raising concerns for therapy choices in environment‐borne infections. The multiple sequence‐type IncI1‐driven spread of penicillinases (bla_TEM‐1, bla_TEM‐135), ESBL (bla_SHV‐12 and bla_CTX‐M‐1) and plasmid‐mediated AmpC β‐lactamases (bla_CMY‐2), produced by isolates that share their molecular features with isolates from humans and animals, suggests contamination of agricultural soils. This is also the first appearance of IncI1/ST28‐harbouring bla_CTX‐M‐1, which should be monitored to prevent their establishment as successfully dispersed plasmids. This research may help disclose paths of contamination by mobile antibiotic resistance determinants and the risks for their dissemination.     

Oxidative stress,DNA damage,and histological alterations in Bombyx mori exposed orally to pesticide dimethoate

Pesticides are an essential part of agricultural practices that ward off pathogens and diseases from the agricultural crop. However, apart from target organisms, these chemicals also have adverse effects on non-target organisms. Dimethoate is an insecticide used extensively in agriculture and horticulture practices worldwide. We used the silkworm Bombyx mori as a model organism to study the effect of commercial formulation of dimethoate (Dimethoate-30% EC) on the gut, silk gland, and fat body tissues. LD₅₀ of dimethoate-30% EC on silkworm (B. mori) was 997 ppm, as reported in a previous study. We used concentrations of 25, 50, and 100 ppm in our experiments. Our results showed that sub-lethal doses of dimethoate caused weight loss and induced damage at the histological level to the mid-gut, silk gland, and fat body of B. mori. It also caused a decrease in the level of antioxidants like CAT, SOD, GPx, GSH, and GST, indicating that dimethoate has produced a shift of ROS balance towards free radical generation and therefore resulted in overall damage to this organism. Sub-lethal doses of this pesticide also caused lipid peroxidation in the silk gland, gut, and fat body of B. mori, damaging these tissues. The disruption was also seen in the mid-gut and middle silk gland at the DNA level, where it caused single-strand breaks, as was revealed by single cell gel electrophoresis studies. Damage at histological, biochemical, and molecular levels was most extreme at a concentration of 100 ppm, the highest sub-lethal concentration given to B. mori.     

Genetic structure of Micromeria (Lamiaceae) in Tenerife,the imprint of geological history and hybridization on within‐island diversification

Geological history of oceanic islands can have a profound effect on the evolutionary history of insular flora, especially in complex islands such as Tenerife in the Canary Islands. Tenerife results from the secondary connection of three paleo‐islands by a central volcano, and other geological events that further shaped it. This geological history has been shown to influence the phylogenetic history of several taxa, including genus Micromeria (Lamiaceae). Screening 15 microsatellite markers in 289 individuals representing the eight species of Micromeria present in Tenerife, this study aims to assess the genetic diversity and structure of these species and its relation with the geological events on the island. In addition, we evaluate the extent of hybridization among species and discuss its influence on the speciation process. We found that the species restricted to the paleo‐islands present lower levels of genetic diversity but the highest levels of genetic differentiation suggesting that their ranges might have contracted over time. The two most widespread species in the island, M. hyssopifolia and M. varia, present the highest genetic diversity levels and a genetic structure that seems correlated with the geological composition of the island. Samples from M. hyssopifolia from the oldest paleo‐island, Adeje, appear as distinct while samples from M. varia segregate into two main clusters corresponding to the paleo‐islands of Anaga and Teno. Evidence of hybridization and intraspecific migration between species was found. We argue that species boundaries would be retained despite hybridization in response to the habitat's specific conditions causing postzygotic isolation and preserving morphological differentiation.     

Assessing Bioindication with Earthworms in An Intensively Farmed Rural Landscape (Yuanqiao and Daqiao Villages in Qianjiang Municipality,Located in Hubei Province,Subtropical China)

Earthworm species diversity, population density, biomass, age-structure, average individual weight, and pattern of distribution were studied in the agricultural landscape of two adjacent villages in Qianjiang Municipality located on the Jiang-Han plain, Hubei Province, China. We identified 16 earthworm species belonging to three families (Moniligastridae, Megascolecidae, and Lumbricidae). Among these, Amynthas hupeiensis and Metaphire guillelmi were the dominant species, and were recorded in significant numbers in different seasons and in the various land-use systems studied. The highest earthworm population density was found in June, before the hot summer, and averaged 23?ind. M^?2, with a maximum of 239?ind. ^?2. Among the nine land-use systems distributed in the landscape, home gardens, intensively cropped commercial vegetable fields and their margins with weeds and bushes generally showed a higher earthworm population density, species diversity, and biomass compared with the other systems. These observations confirm the importance of an heterogeneous agricultural landscape in preserving earthworm abundance and diversity and the possibility to use this group as a possible tool for monitoring landscape changes and sustainability of agricultural practices.     

Habitat relationships of forest birds on Tutuila Island, American Samoa

Aim Our knowledge of landbirds on tropical Pacific islands is often comprised of brief, one-time surveys. We know little of species’ habitat preferences, and this information is critical for understanding the resource requirements or population status of native species and the impacts of human activity on island birds. Location Tutuila Island, American Samoa. Methods The spatial patterns in forest birds were investigated. This island harbours large tracts of native forest, a variety of disturbed and non-native forests, and some relatively healthy bird populations. The distribution of birds was correlated with forest types using habitat data collected at fifty-seven sites and avian census data collected monthly for 1–4 years at these sites. Results Differences in location and in vegetation structure and composition between native and non-native habitats are important influences on the distribution of birds on Tutuila. Among native species, for example, the purple-capped fruit-dove (Ptilinopus porphyraceus Temminck) is dependent upon native habitat, the Samoan starling (Aplonis atrifusca Peale) occurs in all habitats, and the cardinal honeyeater (Myzomela cardinalis Gmelin) is more abundant in low elevation, non-native habitat. Conclusions This research reinforces the importance of quantitative assessment of habitat relationships in the study and conservation of Pacific birds.     

Planting Seedlings in Tree Islands Versus Plantations as a Large‐Scale Tropical Forest Restoration Strategy

Planting tree seedlings in small patches (islands) has been proposed as a method to facilitate forest recovery that is less expensive than planting large areas and better simulates the nucleation process of recovery. We planted seedlings of four tree species at 12 formerly agricultural sites in southern Costa Rica in two designs: plantation (entire 50 × 50 m area planted) and island (six patches of three sizes). We monitored seedling survival, height, and canopy area over 3 years. To elucidate mechanisms influencing survival and growth, we measured soil and foliar nutrients, soil compaction, and photosynthesis. Survival of all species was similar in the two planting designs. Seedling height and canopy area were greater in plantations than islands at most sites, and more seedlings in islands decreased in height due to damage incurred during plot maintenance. Survival, height, and canopy area were both site‐ and species‐specific with the two N‐fixing species (Inga edulis and Erythrina poeppigiana) greater than the other species (Terminalia amazonia and Vochysia guatemalensis). Foliar N was higher in Terminalia and Vochysia in sites where Inga growth was greater. Soil nutrients, however, explained a small amount of the large differences in growth across sites. Leaf mass per area was higher in islands, and P use efficiency was higher in plantations. Our results show advantages (good seedling survival, cheaper) and disadvantages (more seedling damage, slightly lower growth) to the island planting design. Our study highlights the importance of replicating restoration strategies at several sites to make widespread management recommendations.     

Contemporary evolution of a Lepidopteran species,Heliothis virescens,in response to modern agricultural practices

Adaptation to human‐induced environmental change has the potential to profoundly influence the genomic architecture of affected species. This is particularly true in agricultural ecosystems, where anthropogenic selection pressure is strong. Heliothis virescens primarily feeds on cotton in its larval stages, and US populations have been declining since the widespread planting of transgenic cotton, which endogenously expresses proteins derived from Bacillus thuringiensis (Bt). No physiological adaptation to Bt toxin has been found in the field, so adaptation in this altered environment could involve (i) shifts in host plant selection mechanisms to avoid cotton, (ii) changes in detoxification mechanisms required for cotton‐feeding vs. feeding on other hosts or (iii) loss of resistance to previously used management practices including insecticides. Here, we begin to address whether such changes occurred in H. virescens populations between 1997 and 2012, as Bt‐cotton cultivation spread through the agricultural landscape. For our study, we produced an H. virescens genome assembly and used this in concert with a ddRAD‐seq‐enabled genome scan to identify loci with significant allele frequency changes over the 15‐year period. Genetic changes at a previously described H. virescens insecticide target of selection were detectable in our genome scan and increased our confidence in this methodology. Additional loci were also detected as being under selection, and we quantified the selection strength required to elicit observed allele frequency changes at each locus. Potential contributions of genes near loci under selection to adaptive phenotypes in the H. virescens cotton system are discussed.     

Dispersal and diversification: macroevolutionary implications of the MacArthur–Wilson model, illustrated by Simulium (Inseliellum) Rubstov (Diptera: Simuliidae)

Aim Provide an empirical test of the ‘radiation zone’ hypothesis of the MacArthur–Wilson theory of island biogeography using the taxon‐pulse hypothesis of Erwin and Brooks Parsimony Analysis (BPA) on Simulium (Inseliellum) Rubstov. Location Micronesia, Cook Islands, Austral Islands, Society Islands, Marquesas Islands, Fiji and New Caledonia. Methods Primary and secondary BPA of the phylogeny of Inseliellum. Results Primary BPA showed that 15% of the taxon area cladogram contained area reticulations. Secondary BPA (invoking the area duplication convention) generated a clear sequence of dispersal for Inseliellum. The sequence follows a Micronesia – Cook Islands – Marquesas Islands – Society Islands dispersal, with a separate dispersal from the Cook Islands to the Austral Islands less than 1 Ma. A radiation in the island of Tahiti (Society Islands) produced numerous dispersals from Tahiti to other islands within the Society Islands system. Islands close to Tahiti (source island) have been colonized from Tahiti more often than islands far from Tahiti, but a higher proportion of those species colonizing distant islands have become distinct species. Main conclusions The dispersal sequence of Inseliellum exhibits both old to young island dispersal and young to old island dispersal. This is due to habitat availability on each island. Inseliellum is a model system in exemplifying the ‘radiation zone’ hypothesis of MacArthur and Wilson. As well, islands close to the source are colonized more often that those far from the source, but colonization of islands far away from the source results in a higher proportion of speciation events than for islands close to the source. The diversification of Inseliellum corresponds to a taxon‐pulse radiation, with a centre of diversification on Tahiti resulting from its large area and abundant freshwater habitats. This study illustrates the utility of BPA in identifying complex scenarios that can be used to test theories about the complementary roles of ecology and phylogeny in historical biogeography.     

Bio-encapsulation of microbial cells for targeted agricultural delivery

Biofertilizers, namely Rhizobium and biocontrol agents such as Pseudomonas and Trichoderma have been well established in the field of agricultural practices for many decades. Nevertheless, research is still going on in the field of inoculant production to find methods to improve advanced formulation and application in fields. Conventionally used solid and liquid formulations encompass several problems with respect to the low viability of microorganisms during storage and field application. There is also lack of knowledge regarding the best carrier in conventional formulations. Immobilization of microorganisms however improves their shelf-life and field efficacy. In this context, microencapsulation is an advanced technology which has the possibility to overcome the drawbacks of other formulations, results in extended shelf-life, and controlled microbial release from formulations enhancing their application efficacy. This review discusses different microencapsulation technologies including the production strategies and application thereof in agricultural practices.     

Land‐use history,historical connectivity,and land management interact to determine longleaf pine woodland understory richness and composition

Restoration and management activities targeted at recovering biodiversity can lead to unexpected results. In part, this is due to a lack of understanding of how site‐level characteristics, landscape factors, and land‐use history interact with restoration and management practices to determine patterns of diversity. For plants, such factors may be particularly important since plant populations often exhibit lagged responses to habitat loss and degradation. Here, we assess the importance of site‐level, landscape, and historical effects for understory plant species richness and composition across a set of 40 longleaf pine Pinus palustris woodlands undergoing restoration for the federally endangered red‐cockaded woodpecker in the southeastern United States. Land‐use history had an overarching effect on richness and composition. Relative to historically forested sites, sites with agricultural histories (i.e. former pastures or cultivated fields) supported lower species richness and an altered species composition due to fewer upland longleaf pine woodland community members. Landscape effects did not influence the total number of species in either historically forested or post‐agricultural sites; however, understory species composition was affected by historical connectivity, but only for post‐agricultural sites. The influences of management and restoration activities were only apparent once land‐use history was accounted for. Prescribed burning and mechanical overstory thinning were key drivers of understory composition and promoted understory richness in post‐agricultural sites. In historically forested sites these activities had no impact on richness and only prescribed fire influenced composition. Our findings reveal complex interplays between site‐level, landscape, and historical effects, suggest fundamentally different controls over plant communities in longleaf pine woodlands with varying land‐use history, and underscore the importance of considering land‐use history and landscape effects during restoration.     

Anolis lizards as biocontrol agents in mainland and island agroecosystems

Our knowledge of ecological interactions that bolster ecosystem function and productivity has broad applications to the management of agricultural systems. Studies suggest that the presence of generalist predators in agricultural landscapes leads to a decrease in the abundance of herbivorous pests, but our understanding of how these interactions vary across taxa and along gradients of management intensity and eco‐geographic space remains incomplete. In this study, we assessed the functional response and biocontrol potential of a highly ubiquitous insectivore (lizards in the genus Anolis) on the world's most important coffee pest, the coffee berry borer (Hypothalemus hampei). We conducted field surveys and laboratory experiments to examine the impact of land‐use intensification on species richness and abundance of anoles and the capacity of anoles to reduce berry borer infestations in mainland and island coffee systems. Our results show that anoles significantly reduce coffee infestation rates in laboratory settings (Mexico, p = .03, F = 5.13 df = 1, 35; Puerto Rico, p = .014, F = 8.82, df = 1, 10) and are capable of consuming coffee berry borers in high abundance. Additionally, diversified agroecosystems bolster anole abundance, while high‐intensity practices, including the reduction of vegetation complexity and the application of agrochemicals were associated with reduced anole abundance. The results of this study provide supporting evidence of the positive impact of generalist predators on the control of crop pests in agricultural landscapes, and the role of diversified agroecosystems in sustaining both functionally diverse communities and crop production in tropical agroecosystems.     

Landowners’ perspectives of black‐backed jackals (Canis mesomelas) on farmlands in KwaZulu‐Natal,South Africa

Despite continued efforts to eradicate black‐backed jackals (Canis mesomelas), they are considered an abundant mesopredator on agricultural land across South Africa, resulting in ongoing human–wildlife conflict and concern for farmers and wildlife managers. We conducted a questionnaire survey and semi‐formal interviews with farmers throughout KwaZulu‐Natal, examining farmers’ livestock husbandry, land‐use changes and perspectives towards jackals as a perceived threat to livestock. Many (75%) respondents acknowledged expanding agricultural activities on their farmlands since the onset of their farming careers. However, the perception was that these changes placed little pressure on mesopredators as farmers reported frequent daily (25%) and weekly (31%) sightings of jackal, and regular predation on livestock (72%). Some landowners (31%) reported between one and five livestock losses annually and suggest that mitigation strategies to prevent livestock losses are in place. Farmers suggested the increasing intensity in agricultural practices provided a greater food source for jackals allowing them to thrive in expanding agricultural conditions and, in some circumstances, farmers admitted to possibly being a cause through poor disposal techniques for dead animals. Feedback from farmers emphasized the importance of having collaboration between farmers to control jackal predation and reduce human–wildlife conflict.