The formation of the Lycodinae fauna (Perciformes: Zoarcidae) of the Sea of Japan

The subfamily Lycodinae is represented in the Sea of Japan by two genera (Lycodes and Petroschmidtia) and seven species (Lycodes japonicus, L. nakamurae, L. raridens, L. tanakae, L. teraoi, L. yamatoi, and Petroschmidtia toyamensis), which are widely distributed on the shelf and upper continental slope. Based on the geographic and bathymetric distribution of eelpouts of the Sea of Japan and adjacent waters, two groups of closely related species with different types of distribution ranges were distinguished. The first group includes pairs of species that live primarily on the continental slope and are completely isolated in the Sea of Japan or in the Sea of Okhotsk. The second group is comprised of upper interzonal species of the Sea of Japan that are found on the continental slope and shelf, as well as in the southern Sea of Okhotsk from Terpeniya Bay to the southern Kuril Islands. Their related species in the Sea of Okhotsk are mostly found to the north of the Terpeniya Bay. The study of the eelpout distribution and the data on the geological history and paleoclimate of the Far East show that the Lycodinae fauna of the Sea of Japan was formed from North Pacific eelpout-like fishes during the isolation of the sea in the late Pliocene-early Pleistocene, which was concomitant with the general cooling of the Earth’s climate. During the Pleistocene interglacials, the eelpout migrations were unidirectional, from the Sea of Japan to the southern Sea of Okhotsk. The reconstruction of the formation of the Sea of Japan Lycodinae fauna suggests that the related taxa from the Sea of Japan and the Sea of Okhotsk are separate species, while the northern and southern forms of species from the Sea of Japan (Lycodes yamatoi and L. teraoi) are no more than subspecies.     

Genetic evidence supporting the existence of two distinct species in the genusGasterosteus around Japan

Synopsis The genetic and morphological features ofGasterosteus aculeatus were investigated for 29 populations around Japan. Allozyme analyses recognized two groups (Pacific Ocean group and Japan Sea group) that had distinct characteristic features, and showed high genetic differentiation between them (D = 0.482). The Pacific Ocean group had a wide range, from North America to Japan, along the Pacific coast. The distribution of the Japan Sea group was limited around the Sea of Japan and the Sea of Okhotsk. The distribution of these groups were found to be sympatric on the Pacific coast of Hokkaido Island, Japan. From this area, genetic analyses demonstrated that the sympatric populations of the two groups formed independent breeding stocks, and it is considered that the two groups were reproductively isolated from each other. Additionally, each group had distinctive morphological features of lateral plates and caudal keels in the sympatric area. These results suggested that these two groups of the threespine stickleback comprise different species and that the Japan Sea group is taxonomically distinguishable fromG. aculeatus.     

Changes in trace metal concentrations in the tissues of the White Sea mussel <Emphasis Type="Italic">Mytilus edulis</Emphasis> over the reproductive cycle

Seasonal changes in the concentrations and total amounts (contents) of Cd, Zn, and Cu in the mussel Mytilus edulis cultivated in the White Sea were studied over the reproductive cycle (prespawning, spawning, and postspawning stages). The results, when compared with published data on the closely related species M. trossulus from the Sea of Japan, suggest that the seasonal dynamics of trace element contents in mussel tissues are related to specific geochemical conditions, as well as to the dynamics of changes in soft tissue weight over the reproductive cycle. The contents of Cd and Cu in the mussels before, during, and after spawning changed similarly in the mollusks from the White Sea and the Sea of Japan. Changes in the Zn content at different stages of the reproductive cycle of the White Sea mussels were similar to those in mussels from the Sea of Japan but had smaller amplitude. The concentration of Zn in the White Sea mussels was before spawning the highest, but still lower than in mussels from the Sea of Japan. After the spawning, the Zn concentration in the White Sea mussels, in contrast to the Pacific mussels, decreased because of the redistribution of this element during the prespawning period from the somatic tissue into the gonad.     

A review of the genus Malakichthys Döderlein (Perciformes: Acropomatidae) with the description of a new species

Malakichthys Döderlein, 1883, comprises seven species: type species Malakichthys griseus Döderlein 1883, from southern Japan to north‐western Australia; Malakichthys barbatus Yamanoue & Yoseda, 2001 , from southern Japan, the South China Sea, north‐western Australia and the Coral Sea; Malakichthys elegans Matsubara & Yamaguti, 1943 , from southern Japan south to the Arafura Sea; Malakichthys levis Yamanoue & Matsuura, 2001 , from northern Australia; Malakichthys mochizuki Yamanoue & Matsuura, 2001 , from the Coral Sea; Malakichthys similis sp. nov. from the Bohol Sea, Philippines; Malakichthys wakiyae Jordan & Hubbs, 1925 , from southern Japan and Taiwan. Species of Malakichthys are very similar to each other in general appearance but are distinguishable by spination on the lower jaw, features of the proximal‐middle radial of the first anal‐fin pterygiophore, the number of anal‐fin soft rays and body depth.     

Secondary contact in the Sea of Japan: the case of the <Emphasis Type="Italic">Careproctus rastrinus</Emphasis> species complex (Liparidae)

The Careproctus rastrinus species complex, widely known from the North Pacific, has been revealed recently to include nine genetically divergent groups on the basis of mitochondrial DNA (mtDNA) sequence variations. Herein we describe an AFLP analysis that focuses on three closely related groups in order to clarify the evolutionary history of the species complex in the Sea of Japan and off the Pacific coast of Japan. A principal coordinate analysis indicated the absence of nuclear divergence in two groups defined by mtDNA variations in the Sea of Japan, whereas another group from the Pacific coast of northern Japan was clearly distinct. This suggests extensive gene flow between two groups in the Sea of Japan as a result of secondary contact.     

Holoplankton of ship ballast water in the Port of Vladivostok

Ballast water samples were taken from three ships that arrived at the Port of Vladivostok (Peter the Great Bay, Sea of Japan) from ports of Japan (Sea of Japan and Pacific Ocean) and China (Yellow Sea and Yangtze River). The holoplankton in samples was presented by seven taxonomic groups, among which copepods (subclass Copepoda, 33 species) and cladocerans (subclass Cladocera, 5 species) dominated. In the samples, eight nonindigenous copepod species were revealed. The information contained in this paper may be of importance for the assessment of the risk of subsequent invasion of new species and the development of techniques for monitoring the qualitative and quantitative structures of ballast water.     

The distribution and abundance of scyphomedusae (Scyphozoa) of the family Ulmaridae in the pelagic zone of the Sea of Okhotsk and the Sea of Japan

The distribution and abundance of jellyfish of the family Ulmaridae was studied based on the data of trawl surveys conducted in the Sea of Okhotsk (1998–2006) and the Sea of Japan (2003) in the fall. The jellyfish Aurelia aurita mainly inhabits the waters of the Sea of Japan, while in the Sea of Okhotsk small quantities of this species were recorded in southern areas, and solitary individuals, off North Sakhalin. Aurelia limbata tends to shelf waters of the Sea of Okhotsk, being less abundant in the southern deepwater area and in the Sea of Japan. Phacellophora camtschatica, in contrast, aggregates mostly over deep basins, whereas in shallow areas a significant quantity of this species was found only off West Kamchatka. In the northern Sea of Okhotsk, the species A. limbata dominated in biomass and abundance among Ulmaridae. During the studied period, its biomass varied from 27 to 803 kg/km² and its abundance varied from 69 to 1706 ind/km². In the southern Sea of Okhotsk, as a rule, P. camtschatica prevailed (1–16 kg/km² and 6–46 ind/km²). In the Sea of Japan, the most abundant species was A. aurita (29 kg/km² and 104 ind/km²). The jellyfish size structure in catches is presented.     

Origin of juvenile chum salmon <Emphasis Type="Italic">Oncorhynchus keta</Emphasis> (Salmonidae) in the Sea of Okhotsk coastal waters off South Sakhalin

Based on the data of the analysis of distribution of juvenile chum salmon Oncorhynchus keta that were marked at salmon hatcheries in the southern part of the Sakhalin Island and Japan it has been established that their stocks in the Sea of Okhotsk coastal waters off South Sakhalin and Japan are of mixed origin. One part of the stock is composed of juveniles from hatcheries located in the southern part of Sakhalin, and the other part is composed of migrants from the waters adjacent to Japan. The first part is formed by juveniles both from hatcheries on the Sea of Okhotsk and Sea of Japan coasts of South Sakhalin. The second part is formed by juveniles reared at hatcheries in all regions of Japan: the Pacific and Sea of Okhotsk coasts of Honshu and Hokkaido, and from the Sea of Okhotsk coast of Hokkaido and Izmena (Nemuro) Strait. In July, in the Sea of Okhotsk coastal waters off South Sakhalin, the length and weight of most juvenile chum salmon of Japanese origin exceed 10 cm and 10 g, and juveniles of Sakhalin origin are always smaller than 10 cm and 10 g, which makes it possible to differentiate juveniles in trawl catches.     

Diversity of piezophilic microorganisms in the closed ocean Japan Sea

Deep-sea sediment samples were collected at a depth of 3,064 m in the Japan Sea. Microorganisms in the sediment sample were cultivated under several pressure conditions, and the high-pressure adapted microbes were isolated. Two of the isolates exhibited piezophilic growth profiles. This is the first report to show the presence of piezophiles in the Japan Sea.     

Intraspecific differences in patterns of courtship behaviours between the Pacific Ocean and Japan Sea forms of the three-spined stickleback Gasterosteus aculeatus

The courtship behaviour of the Pacific Ocean and Japan Sea forms of the three-spined stickleback Gasterosteus aculeatus were studied in seven populations. The intraspecific difference in behavioural patterns, zigzag dance and weak dorsal pricking in the Pacific Ocean form and lateral display and vigorous dorsal pricking in the Japan Sea form, was clearly distinguishable regardless of the type of habitat the males lived in.     

The Holocene climatic optimum at the southern coast of the Sea of Japan

Palynological spectra were studied from piston-cores of bottom sediments in the southwestern part of the Sea of Japan and the East Korea Bay. Five palynological assemblages were revealed in the sediments of the deep core and three, in the shelf core. The palynological assemblages were formed during different climatic phases and reflect main stages in the development of the vegetation of the region. The Holocene optimum was determined for the southern coast of the Sea of Japan.     

Ligophorus abditus n. sp. (Monogenea: Ancyrocephalidae) and other species of Ligophorus Euzet & Suriano, 1977 infecting the flathead grey mullet Mugil cephalus L. in the Sea of Japan and the Yellow Sea

As a result of the re-examination of museum slides and new material of monogeneans collected from Mugil cephalus L. in the Sea of Japan, the estuary of a river which flows into the Sea of Japan, the Yellow Sea (off Zhifu, at the boundary of the Bohai Sea) and the East China Sea (off the Ryukyu Islands), five species of Ligophorus Euzet & Suriano, 1977 were identified, one of which is new. The known species are L. chabaudi Euzet & Suriano, 1977, L. cheleus Rubtsova, Balbuena & Sarabeev, 2007, L. domnichi Rubtsova, Balbuena & Sarabeev, 2007 and L. pacificus Rubtsova, Balbuena & Sarabeev, 2007, which are reported from the Yellow Sea; in addition, L. domnichi is reported for the first time from the East China Sea. Ligophorus abditus n. sp., from the Sea of Japan, differs from its most similar congeners, L. pacificus and L. domnichi, in the shapes of the dorsal anchors and the accessory piece of the male copulatory organ. A comparison of all of the species of Ligophorus recovered from M. cephalus in the Sea of Japan was carried out using Principal Component Analysis, and their distribution and origin are discussed.     

Fauna of hydromedusae (Cnidaria: Hydrozoa) of the northwestern Sea of Japan

A brief overview of studies of hydromedusae (Cnidaria: Hydrozoa) of the northwestern Sea of Japan is provided. Based on literature data and plankton sampling by the authors, an annotated checklist of hydromedusae of the northwestern Sea of Japan was compiled for the first time. It includes 25 species belonging to 20 families and 5 orders.     

Analysis of the hatching site and migratory behaviour of the swordtip squid (Uroteuthis edulis) caught in the Japan Sea and Tsushima Strait in autumn estimated by statolith analysis

In contrast to the swordtip squid (Uroteuthis edulis) caught in the spring and summer, those caught in the autumn in the Japan Sea and the Tsushima Strait are characterized by thick bodies with large clubs, long tentacles and large suckers. In addition, most females and many males are immature. However, the reasons for these characteristics, as well as the hatching site and migratory behaviour, are not well known. The empirical water temperature of juveniles was estimated at ～17°C through strontium:calcium (Sr:Ca) ratios in statoliths and information on seawater temperature distribution. The ontogenetic variation in Sr:Ca ratios decreased from hatching to 60 days after hatching and then remained stable. The estimated water temperature was ～21°C after 60 days. Thus, individuals of the autumn-migrating group most likely hatch in the southern East China Sea in the winter and early spring and then move north-eastwards with currents and pass through the Tsushima Strait into the southern Japan Sea during or after July. However, the squid could be present in these waters without strong currents northeast of Tsushima Island, where thermoclines occur during summer, and become confined in limited layers until vertical mixing occurs in the autumn. The distribution of the squid would thereafter extend to fishing grounds in the southern and south-eastern Japan Sea and then to the Tsushima Strait. This migratory behaviour could be the cause of the observed characteristics because bottom seawater temperatures are much lower in the Japan Sea than in the East China Sea.     

SEGREGATIVE MIGRATION OF DALL'S PORPOISE (PHOCOENOIDES DALLI) IN THE SEA OF JAPAN AND SEA OF OKHOTSK

Dall's porpoises from the Sea of Japan population taken by a dolphin fishery vessel were examined. Estimated body lengths at sexual maturity were similar to those for the truei -type population off the Pacific coast of Japan but larger than those for the offshore dalli -type in the North Pacific. The Sea of Japan population is known to migrate to the Pacific coast of Japan through Tsugaru Strait and to the Sea of Okhotsk through Soya Strait in summer. From the difference of catch composition, individuals of different reproductive status in this population are considered to have different patterns of summer migration. Most of the individuals which migrate into the Pacific Ocean through Tsugaru Strait are sexually immature, while those migrating into the Sea of Okhotsk are mature. The Sea of Okhotsk is thought to be a breeding area for this population. The calving season is estimated to be May through June, which is earlier than that of the truei -type off the Pacific coast of northern Japan. This may be an adaptation to lower water temperatures in the Sea of Japan during winter.     

Genome scan of the mitten crab Eriocheir sensu stricto in East Asia: population differentiation, hybridization and adaptive speciation

We examine the genetic structure and evolutionary history of the mitten crab Eriocheir sensu stricto in East Asia by employing a genome scan - amplified fragment length polymorphism. Population analysis reveals three divergent clades in Eriocheir s. s., which dominate the East China Sea-Yellow Sea, the Sea of Japan (plus Okinawa) and the South China Sea, respectively, mostly in agreement with our previous mtDNA analysis. With the tropical South China Sea inferred as the origin, the East China Sea-Yellow Sea and the Sea of Japan clades in the north diverged successively from the ancestral clade during the mid-Pleistocene. The divergence of the three clades likely resulted from isolation of the three marginal seas caused by sea level change in the Pleistocene. Two sympatric zones, one of the East China Sea-Yellow Sea and the South China Sea clades in southeast China and the other of the East China Sea-Yellow Sea and the Sea of Japan clades in Vladivostok, are demonstrated to be hybrid zones, with hybridization occurring currently in the former but historically in the latter. Adaptive speciation is observed in the divergence process of the three clades, possibly because of selection from accumulated temperature. Our study indicates that the genetic structure and evolutionary history of Eriocheir s. s. have been primarily affected by Pleistocene glacial cycles, secondarily by divergent selection and drainage isolation, but only minimally by human activities.     

The biogeochemical background and trace metal accumulation by brown algae of the genus <Emphasis Type="Italic">Fucus</Emphasis> in coastal waters of the Sea of Japan,the Sea of Okhotsk,and the White Sea

The ranges of background concentrations of Fe, Mn, Zn, Cu, and Cd in Fucus algae from the Sea of Japan, the Sea of Okhotsk, and the White Sea were determined. The lower background threshold of element concentration was calculated as Me₁₅–2MAD₁₅, the upper background threshold was determined as Me+2MAD. The upper background threshold of the metal contents in Fucus algae can be used as the maximum permissible regional concentration in assessing pollution levels of marine habitats. Comparison of the Me₁₅–2MAD₁₅ values showed that Fucus algae of the White Sea had increased Mn and decreased Cd concentrations compared to those in Pacific algae. The concentrations of Zn were higher in Fucus algae of the Sea of Japan than in macrophytes from the White Sea and the Sea of Okhotsk. The background concentration range of Fe in Fucus algae of the Sea of Japan was much narrower compared to that in their counterparts from the White Sea and the Sea of Okhotsk. The background metal concentrations in Fucus algae are specific to a sea region; their variations are connected not only with the trace element contents in abiotic components of the environment, but also with the functioning of coastal ecosystems.     

Comparative Analysis of Japanese Three-Spined Stickleback Clades Reveals the Pacific Ocean Lineage Has Adapted to Freshwater Environments while the Japan Sea Has Not

Divergent selection and adaptive divergence can increase phenotypic diversification amongst populations and lineages. Yet adaptive divergence between different environments, habitats or niches does not occur in all lineages. For example, the colonization of freshwater environments by ancestral marine species has triggered adaptive radiation and phenotypic diversification in some taxa but not in others. Studying closely related lineages differing in their ability to diversify is an excellent means of understanding the factors promoting and constraining adaptive evolution. A well-known example of the evolution of increased phenotypic diversification following freshwater colonization is the three-spined stickleback. Two closely related stickleback lineages, the Pacific Ocean and the Japan Sea occur in Japan. However, Japanese freshwater stickleback populations are derived from the Pacific Ocean lineage only, suggesting the Japan Sea lineage is unable to colonize freshwater. Using stable isotope data and trophic morphology, we first show higher rates of phenotypic and ecological diversification between marine and freshwater populations within the Pacific Ocean lineage, confirming adaptive divergence has occurred between the two lineages and within the Pacific Ocean lineage but not in the Japan Sea lineage. We further identified consistent divergence in diet and foraging behaviour between marine forms from each lineage, confirming Pacific Ocean marine sticklebacks, from which all Japanese freshwater populations are derived, are better adapted to freshwater environments than Japan Sea sticklebacks. We suggest adaptive divergence between ancestral marine populations may have played a role in constraining phenotypic diversification and adaptive evolution in Japanese sticklebacks.     

Population structure of the sailfin sandfish, Arctoscopus japonicus (Trichodontidae), in the Sea of Japan

We analyzed patterns of genetic diversity in the sailfin sandfish (Arctoscopus japonicus), focusing on population subdivisions within the Sea of Japan. We observed 270 specimens from nine sampling sites in 1999–2000, i.e., seven sites in the Sea of Japan and two sites from the Pacific coast of Hokkaido. An additional site (30 specimens) was sampled from eastern Korea in the spawning season of 2004 for comparison. Forty haplotypes, compiled into three haplogroups (A–C), were detected based on the comparison of a 400-bp sequence of the anterior part of the mitochondrial control region. In accordance with previous hypotheses from morphological and molecular analyses, genetic discontinuity between the Sea of Japan and the Pacific coast of Hokkaido was conspicuous. Within the Sea of Japan, eight sampling sites were not genetically uniform, and most of the variations among sites were detected between eastern Korea [the “eastern Korea” (EK) population: distributed from the Korean Peninsula to Mishima, Yamaguchi Prefecture] and the other sites along the coast of Japan [the “western Japan” (WJ) population: from Oki Islands to western Hokkaido] (Φ _CT  = 0.096, P = 0.0183). The WJ population, having lower genetic variability, showed significant departure from neutrality, indicating influences through a recent population expansion. The period of the expansion can be estimated to have begun on the order of 10⁴ years ago. We consider that the present Japan Sea populations have been formed through the invasion of a small ancestral stock to the Sea of Japan and its population expansion during the last glacial period or later. On the other hand, we failed to detect distinct evidence of a population expansion in the EK population. Haplogroup C, detected in a high frequency in this population, was estimated to have mixed with haplogroup A after rapid differentiations of the latter. Therefore, the EK population, strongly influenced by such a mixture, might possess haplogroup C in a higher frequency and a different haplotype composition from the WJ population.     

New Data on the Cenozoic History of the Underwater Yamato Rise,Sea of Japan

The Miocene terrestrial plant assemblage (in macro- and microfossils) from the underwater Yamato Rise (Sea of Japan) is examined. A fossil leaf found in the tuffogenic–sedimentary strata is identified as belonging to the beech tree. Data on the Paleogene–Neogene history of the underwater rise are given. Against the background of its general subsidence, positive relief features (volcanoes and their formations) were formed. During the Cenozoic, the entire Sea of Japan depression experienced a submergence.