一种快速、无损大豆种子DNA提取方法的建立和应用

基因分型是进行植物基因功能的遗传分析和分子标记辅助育种的重要环节。该研究以大豆(Glycine max)成熟种子为材料, 建立了通过钻孔采集样品、快速提取DNA进行基因型鉴定的方法。用此方法, 一个熟练的工作人员可以在1个小时内完成120个样品的采集和DNA提取; 同时种子钻孔取样后, 不会对大豆种子的萌发造成影响。利用该方法获得的DNA可满足PCR扩增的要求。实验重复性好, 成功率在98%以上。这种快速且无损的大豆种子基因型鉴定方法可以用于鉴定杂交种子、品种纯度以及遗传分析等研究工作。     

一种通用的基因组DNA提取方法

目的:探讨一种通厢的基因组DNA提取方法.方法:采用改良的膜法分别从动植物组织、外周血、细菌、细胞等标本提取基因组DNA,DNA样品经紫外吸收、琼脂糖凝胶电泳、PCR扩增和酶切进行榆测.结果:该方法提取的基因组DNA纯度较高,电泳条带清晰,DNA质量能满足下游分子生物学研究的需要.结论:该方法简便快速、适用范围广,是提取基因组DNA的一种有效方法.     

A Simple Chelex Protocol for DNA Extraction from Anopheles spp.

Endemic countries are increasingly adopting molecular tools for efficient typing, identification and surveillance against malaria parasites and vector mosquitoes, as an integral part of their control programs^1,2,3,4,5. For sustainable establishment of these accurate approaches in operations research to strengthen malaria control and elimination efforts, simple and affordable methods, with parsimonious reagent and equipment requirements are essential^6,7,8. Here we present a simple Chelex-based technique for extracting malaria parasite and vector DNA from field collected mosquito specimens.We morphologically identified 72 Anopheles gambiae sl. from 156 mosquitoes captured by pyrethrum spray catches in sleeping rooms of households within a 2,000 km² vicinity of the Malaria Institute at Macha. After dissection to separate the head and thorax from the abdomen for all 72 Anopheles gambiae sl. mosquitoes, the two sections were individually placed in 1.5 ml microcentrifuge tubes and submerged in 20 μl of deionized water. Using a sterile pipette tip, each mosquito section was separately homogenized to a uniform suspension in the deionized water. Of the ensuing homogenate from each mosquito section, 10 μl was retained while the other 10 μl was transferred to a separate autoclaved 1.5 ml tube. The separate aliquots were subjected to DNA extraction by either the simplified Chelex or the standard salting out extraction protocol^9,10. The salting out protocol is so-called and widely used because it employs high salt concentrations in lieu of hazardous organic solvents (such as phenol and chloroform) for the protein precipitation step during DNA extraction⁹.Extracts were used as templates for PCR amplification using primers targeting arthropod mitochondrial nicotinamide adenine dinucleotide dehydrogenase (NADH) subunit 4 gene (ND4) to check DNA quality¹¹, a PCR for identification of Anopheles gambiae sibling species¹⁰ and a nested PCR for typing of Plasmodium falciparum infection¹². Comparison using DNA quality (ND4) PCR showed 93% sensitivity and 82% specificity for the Chelex approach relative to the established salting out protocol. Corresponding values of sensitivity and specificity were 100% and 78%, respectively, using sibling species identification PCR and 92% and 80%, respectively for P. falciparum detection PCR. There were no significant differences in proportion of samples giving amplicon signal with the Chelex or the regular salting out protocol across all three PCR applications. The Chelex approach required three simple reagents and 37 min to complete, while the salting out protocol entailed 10 different reagents and 2 hr and 47 min'' processing time, including an overnight step. Our results show that the Chelex method is comparable to the existing salting out extraction and can be substituted as a simple and sustainable approach in resource-limited settings where a constant reagent supply chain is often difficult to maintain.     

一种适合AFLP分析的柑橘DNA提取方法

目的：通过对传统用于AFLP分析的DNA提取方法进行改善调和整得到一种效率较高,DNA损失较少适合于柑橘AFLP分析的DNA提取方法。方法：利用改善后的方法提取了13份参试柑橘材料（无病虫害的鲜叶）的DNA基因组,后用0．8％琼脂糖进行电泳检测,并进行了AFLP试验。结论：结果分别得到了清晰的DNA模板检测图和AFLP指纹图谱,表明该方法提取的DNA无降解且较纯,其质量完全满足AFLP技术的要求,并且在提取效率,减少DNA损失等方面体现出了优势。     

一种改进的小型节肢动物无形态损伤的DNA提取方法

本文介绍了一种改进的小型节肢动物无形态损伤的DNA提取方法,并在双尾纲、原尾纲和弹尾纲中进行了实验验证。结果表明,该方法可以高效的提取三类小型节肢动物的DNA,并用于扩增目标基因序列,凭证标本的回收质量高,有助于进一步的分类鉴定。该方法有望对螨、蚜虫、介壳虫、蚤等其他小型节肢动物的分子鉴定提供方便。     

一种蜘蛛基因组DNA的简易提取方法

本文介绍了1种改进的蜘蛛基因组DNA的提取方法.通过与传统DNA提取方法的比较,本方法具有可在常温条件下进行、DNA得率高、简便、经济等优势.     

一种提取蜘蛛基因组DNA的有效方法

介绍了用尿素法提取蜘蛛基因组DNA。通过与其他DNA提取方法相比较,证明尿素法具有可在室温条件下进行、DNA得率高、完整性好、简单快速等优点。以提取的DNA为模板进行PCR扩增,获得预期大小的、高重复、高GC含量的编码蜘蛛牵引丝蛋白基因的DNA片段。     

一种棉花线粒体DNA的提取方法

线粒体是重要的细胞器,它有自身的基因组。其基因组DNA与细胞核基因组DNA相比,含量较低。棉花当中富含棉酚、丹宁等物质,这对提取DNA有很大的影响。因此我们根据棉花自身的特点,找到了一种提取棉花线粒体DNA经济有效的方法,其质量可以满足限制性酶切、PCR、分子杂交等实验的要求。     

A Method for DNA Extraction from the Desert Cyanobacterium Chroococcidiopsis and Its Application to Identification of ftsZ

A method was developed for extraction of DNA from Chroococcidiopsis that overcomes obstacles posed by bacterial contamination and the presence of a thick envelope surrounding the cyanobacterial cells. The method is based on the resistance of Chroococcidiopsis to lysozyme and consists of a lysozyme treatment followed by osmotic shock that reduces the bacterial contamination by 3 orders of magnitude. Then DNase treatment is performed to eliminate DNA from the bacterial lysate. Lysis of Chroococcidiopsis cells is achieved by grinding with glass beads in the presence of hot phenol. Extracted DNA is further purified by cesium-chloride density gradient ultracentrifugation. This method permitted the first molecular approach to the study of Chroococcidiopsis, and a 570-bp fragment of the gene ftsZ was cloned and sequenced.     

陈旧皮张中DNA提取的新方法

对传统的馆藏陈旧皮张标本DNA提取方法进行了改进,所提DNA分子量可达1kb,而且具有样品用量少（约0.01g),消化时间短（约14h)和操作步骤简单等优点,利用所提DNA,对小熊猫等珍稀动物线粒体DNA的细胞色素b和控制区序列的部分片段进行了PCR扩增,序列测定和比较分析,证实所提DNA合格而无污染,完全可以用于珍稀动物保护遗传学研究。     

一种快速握取植物总DNA的良好材料与方法

本文介绍以种子植物幼嫩胚乳为材料,用改良的氯仿－异戊醇快速提取方法提取植物总ＤＮＡ。这种材料和方法,细胞磨碎容易,ＤＮＡ收取量大,操作简便,适用于遗传操作及教学实验等方面的ＤＮＡ快速制备。     

一种从雉类孵化卵壳中提取DNA的方法

从鸟类已孵化的卵壳中提取DNA属于一种非损伤性取样技术,在鸟类分子生态学研究中具有广阔的应用前景。本实验以河南董寨自然保护区白冠长尾雉(Syrmaticus reevesii)和环颈雉(Phasianuscolchicus)已孵化的卵壳为材料,利用红细胞破碎液、蛋白酶K及RNA酶等试剂,对卵壳膜内的总DNA进行了提取,建立了一种提取高质量DNA的新方法。琼脂糖凝胶电泳检测显示,采用新改进的方法提取出的DNA条带清晰。同时,利用聚合酶链式反应(PCR)技术成功地从总DNA中扩增出两种雉类的线粒体DNA控制区(CR)片段,测序后与GenBank中同一物种的CR序列进行比对,结果证实了PCR产物的真实性。文中利用卵壳膜提取出的DNA,对一窝环颈雉的雏鸟进行了性别鉴定,其结果与根据形态特征进行鉴定的结果完全一致,均为3雄4雌,从而证实了从卵壳膜中提取DNA的真实性。该种DNA提取方法在雉类研究中将具有广泛的应用。     

一种简便高效的酵母基因组提取方法

提取基因组进行检测是酵母研究过程中的必要步骤之一。以毕赤酵母菌株GS115作为研究对象,主要成分为0.2 mol/L醋酸锂和1% SDS的酵母裂解液能高效的裂解酵母细胞壁。与两种酵母基因组提取试剂盒相比,该方法从相同体积的酵母培养液中获得的基因组的量高5倍以上,并且操作简便、快速,能在2 h内完成一次提取过程,极大地缩短了时间。以GS115中的内源AOX基因为目的基因,对提取的基因组进行PCR检测和Southern杂交检测,进一步验证了基因组的质量。因此,本文建立了一种简便、快速、经济而高效的酵母基因提取方法。     

一种简单、有效的适于PCR操作的放线菌DNA提取方法

目的:利用改良酶法发展了一种从微量(几百微升)发酵液中快速安全的提取放线菌基因组DNA的方法。方法:利用溶菌酶破壁,蛋白酶K和SDS除蛋白,成功提取较高质量的放线菌基因组DNA,所得的DNA可作为PCR反应的模板进行16SrRNA等基因有效扩增。结果:能从海绵和土壤分离的放线菌中成功提取基因组DNA。结论:该方法操作简单、费用低廉、不使用酚、氯仿等有毒害作用有机试剂,非常适于长期从事放线菌操作的研究人员。为大量放线菌菌株的快速鉴别、高通量筛选和系统分类研究创造了条件。     

3种小球藻DNA提取方法的比较

单细胞真核藻类小球藻已成为藻类分子生物学研究的热点,但其特殊的细胞壁组分给DNA的提取带来了一定的困难。文章比较了3种从小球藻中提取DNA的方法,即纤维素酶法、作者改进的CATB法和目前单细胞藻类常用的裂解法。通过所提取的DNA进行浓度、纯度分析,认为CTAB法是一种简单、快速和高效的适合于小球藻的DNA提取方法。     

一种从人血凝块中提取基因组DNA的方法

介绍了一种新的从人血凝块中提取基因组DNA的方法,用该方法提取的DNA成功地应用于PCR和限制性酶切等后续实验中。基本过程为首先机械粉碎,然后高盐高EDTA溶液处理,含蛋白酶K和SDS的消化液变换温度消化,苯酚氯仿抽提。     

The Characterization of an Adrenergic Signalling System Involved in the Encystment of the Ocular Pathogen Acanthamoeba spp.

The aim of this study was to identify and characterize the receptor system involved in controlling encystment in Acanthamoeba using specific agonists and antagonists and to examine whether endogenous stores of catecholamines are produced by the organism. Acanthamoeba trophozoites suspended in axenic growth medium were exposed to adrenoceptor agonists and antagonists to determine which compounds promoted or prevented encystment. Second, trophozoites were cultured in medium containing a catecholamine synthesis inhibitor to investigate the effect this had on natural encystment. Nonspecific adrenoceptor agonists including epinephrine, isoprotenerol, and the selective β1 adrenoceptor agonist dobutamine were found to cause > 90% encystment of Acanthamoeba trophozoites compared to < 30% with the controls. The selective β1 antagonist metoprolol was able to inhibit epinephrine mediated encystment by > 55%. Cultures of Acanthamoeba with the catecholamine synthesis inhibitor α‐methyl‐p‐tyrosine significantly reduced the level of amoebic encystment compared to controls. In conclusion, Acanthamoeba appear to contain a functional adrenergic receptor system of unknown structure which is involved in initiating the encystment process that can be activated and blocked by β1 agonists and antagonists respectively. Furthermore, the presence of this receptor system in Acanthamoeba indicates that topical β adrenoceptor blockers may be effective adjunct therapy by reducing the transformation of trophozoites into the highly resistant cyst stage.     

一种高效提取普通小球藻叶绿体DNA的新方法

本文采用尿素-月桂酰肌氨酸钠（urea-sarkosyl）法, 用于分离带有坚硬细胞壁小球藻的高纯度叶绿体DNA （cpDNA）。将对数生长期的小球藻收集后置于冰上研磨, percoll密度梯度离心收集叶绿体层, 显微观察表明叶绿体经梯度离心后形态完整。采用尿素-月桂酰肌氨酸钠法、蛋白酶K消化及酚/氯仿/异戊醇抽提, 获得了高纯度的cpDNA。检测结果显示, cpDNA分子长度为22 kb, A260：A280值为1.87±0.01, 产率达（2.52±0.01） μg？g-1 （DW）; cpDNA编码的16S rDNA扩增呈阳性, 而由细胞核编码的18S rDNA扩增呈阴性。表明cpDNA纯度高, 没有受到核基因组DNA的污染, 符合小球藻cpDNA高通量测序的要求。同时, 该方法也适合提取具有相似细胞壁成分的其他微藻的基因组DNA和cpDNA。     

A Simple Silica-based Method for Metagenomic DNA Extraction from Soil and Sediments

A new method is described for extraction of metagenomic DNA from soil and sediments which is based on DNA adsorption to silica without the use of phenol, ethanol precipitation or a cesium chloride gradient. High-quality DNA was obtained, and PCR inhibition was overcome by adding bovine serum albumin and adjusting magnesium concentration. By using PCR-DGGE with Firmicutes and lactic acid bacteria-specific primers the extracted metagenomic DNA was shown to contain a mixture of bacterial genomes. This method can be used for screening bacterial diversity in soil and sediment samples.     

锈菌夏孢子DNA的微量快速提取方法

采用4种方法对毛白杨锈病单个夏孢子堆DNA提取和ITS—PCR扩增表明,钢珠法、玻片法均是锈菌基因组DNA微量快速提取的合适方法,以钢珠法最优,整个过程仅需30min,并且可以获得与CTAB法、氯化苄法相同的PCR扩增结果。钢珠法是在提取液中加入2-3颗钢珠,靠钢珠在涡旋中的相互碰撞将夏孢子破壁,以同时加入NaOH(终浓度3．3％)和Chelex-100(终浓度1．6％)效果最好,ITS-PCR扩增能稳定得到700bp片段。玻片法也能得到相同的结果。分析比较了4种方法的优缺点。