中国丛枝菌根真菌分子多样性

【背景】随着分子生物学技术的发展,通过分子生物学方法鉴定丛枝菌根真菌(Arbuscular mycorrhizal fungi,AMF)多样性的研究越来越多。目前,AMF在全球的分子多样性及其分布已引起关注,但在我国关于AMF分子多样性的研究进展状况尚未见报道。【目的】探究我国AMF分子多样性及其分布,研究不同气候区域以及不同生态系统中AMF分子多样性并揭示其分布规律,为我国AMF在分子水平上的研究提供基础数据。【方法】利用Davison于2015年发表于"Science"上的一篇有关全球AMF分子多样性的数据库,选用中国AMF多样性的数据,并补充了近年来已发表的该数据库中未涉及的数据,建立中国AMF分子多样性的新数据库。【结果】共得到145个分子生物学鉴定出的虚拟种(Virtualtaxa,VT),隶属于8科12属。对于不同生态系统而言,草地生态系统中AMF的分子多样性最高,占到总VT数的60.7%,人为生态系统和森林生态系统也分别达到55.2%和43.4%。同样,AMF的VT数也随气候区域的不同而有所变化,温带气候区域所占比例最高(64.1%),亚热带气候区域次之(60.7%),极北气候区域最少(20.7%)。而对于根系和土壤样品中AMF的分子多样性而言,根系样品中发现的AMF分子多样性(80.0%)高于土壤中AMF的分子多样性(48.3%)。进一步对不同生态系统、气候区域和样品来源分别在属的水平上进行研究,同样也存在一定的差异。【结论】我国具有丰富的AMF分子多样性,且不同气候区域、生态系统以及样品来源都影响着AMF的分子多样性及其分布。     

Global arbuscular mycorrhizal fungal diversity and abundance decreases with soil available phosphorus

Aim

Arbuscular mycorrhizal fungi (AMF) are widely distributed soil organisms that play critical roles in ecosystem functions. However, little is known about their global distribution and the underlying mechanisms. Here, we aimed to explore distribution pattern and key predictors of AMF diversity and abundance at the global scale.

Location

Global.

Time Period

1987–2022.

Major Taxa Studied

Arbuscular mycorrhizal fungi.

Methods

We investigated the distribution pattern and key predictors of AMF diversity and abundance at the global scale by compiling 654 field studies.

Results

We found that cold climate zones had relatively low AMF diversity. At the ecosystem level, grassland tended to have higher AMF diversity and abundance. Soil available phosphorus (P) and latitude were the most important predictors of AMF diversity. AMF richness and Shannon index decreased with increasing soil available P and latitude. Soil available P and soil pH were the main predictors for global distribution of AMF abundance. AMF colonization rate and spore abundance declined with soil available P and increased with soil pH. Mean annual precipitation was also an important, positive correlate of spore abundance.

Main Conclusions

Our findings highlight soil available P as an important predictor affecting the distribution of AMF diversity and abundance, advancing our understanding of the mechanisms underlying the distribution patterns of mycorrhizal fungal diversity and abundance at the global scale.     

Terrestrial vertebrates promote arbuscular mycorrhizal fungal diversity and inoculum potential in a rain forest soil

We examined whether terrestrial vertebrates affected the arbuscular mycorrhizal fungal spore communities and mycorrhizal inoculum potential (MIP) of a tropical rain forest soil by comparing plots where terrestrial vertebrates had been excluded for 3 years to adjacent control plots. We extracted spores from soil using sucrose density gradient centrifugation and assayed MIP by growing seedlings of maize ( Zea mays ) and a rain forest tree ( Flindersia brayleana ) in intact soil cores from exclosure and control plots. Control plots had significantly higher spore abundance, species richness and diversity than exclosures. Spore community composition also differed significantly between exclosure and control plots. Seedlings of both plant species grown in control cores had significantly higher arbuscular-mycorrhizal colonization than those grown in exclosure cores. This study suggests that loss of vertebrates could alter rates of mycorrhizal colonization with consequences for community and ecosystem properties.     

Seasonal dynamics of arbuscular mycorrhizal fungal communities in roots in a seminatural grassland

Symbiotic arbuscular mycorrhizal fungi (AMF) have been shown to influence both the diversity and productivity of grassland plant communities. These effects have been postulated to depend on the differential effects of individual mycorrhizal taxa on different plant species; however, so far there are few detailed studies of the dynamics of AMF colonization of different plant species. In this study, we characterized the communities of AMF colonizing the roots of two plant species, Prunella vulgaris and Antennaria dioica, in a Swedish seminatural grassland at different times of the year. The AMF small subunit rRNA genes were subjected to PCR, cloning, sequencing, and phylogenetic analysis. Nineteen discrete sequence types belonging to Glomus groups A and B and to the genus Acaulospora were distinguished. No significant seasonal changes in the species compositions of the AMF communities as a whole were observed. However, the two plant species hosted significantly different AMF communities. P. vulgaris hosted a rich AMF community throughout the entire growing season. The presence of AMF in A. dioica decreased dramatically in autumn, while an increased presence of Ascomycetes species was detected.     

Glomalin: an arbuscular mycorrhizal fungal soil protein

Glomalin is abundant in soils and is closely correlated with aggregate water stability. Glomalin contains carbon and, hence, constitutes a non-trivial portion of the terrestrial carbon pool. Possibly far more importantly, however, stabilization of aggregates amplifies the role of glomalin in soils because carbonaceous compounds are protected from degradation inside of aggregates. Increased atmospheric CO₂ can lead to increased production of glomalin because of the symbiotic association that exists between plants and producers of glomalin, arbuscular mycorrhizal fungi (AMF). Glomalin concentrations in soils are influenced by management practices, for example, in agroecosystems, further highlighting the role of this protein in carbon storage. Glomalin is an unusual molecule that has proven difficult to analyze biochemically due to its recalcitrance and complexity. Future research will be directed towards the elucidation of its structure and controls on its production.     

盐碱胁迫对染内生菌和不染菌苇状羊茅根系丛枝菌根真菌群落多样性和组成的影响

香柱菌属Epichloë内生真菌存在于宿主植物地上部组织,不仅能提高宿主植物对生物与非生物逆境的抗性,而且能对周围环境中的微生物产生影响。该研究以染内生菌(endophyte-infected,EI)和不染菌(endophyte-free,EF)苇状羊茅Festuca arundinacea为实验材料,探究内生真菌和不同水平盐碱胁迫处理对宿主根系丛枝菌根真菌(arbuscular mycorrhizal fungi,AMF)群落多样性和组成的影响。结果表明,内生真菌和盐碱胁迫处理对苇状羊茅根系AMF多样性影响存在交互作用。EF苇状羊茅根系AMF多样性随盐碱胁迫处理水平的增加而降低,内生真菌的存在缓解了这一效应,在200和400 mmol/L盐碱胁迫处理下,内生真菌感染增加了苇状羊茅根系AMF多样性;此外,内生真菌感染改变了苇状羊茅根系AMF群落组成,降低了优势属Funneliformis相对多度,增加了Claroideoglomus、Glomus和unclassified AMF相对多度。结构方程模型结果表明,内生真菌通过间接增加土壤总磷浓度对苇状羊茅根系AMF多样性产生影响。本研究为筛选盐碱污染区生态修复的植物-微生物共生体提供基础。     

Anthropogenic disturbance equalizes diversity levels in arbuscular mycorrhizal fungal communities

The arbuscular mycorrhizal (AM) symbiosis is a key plant–microbe interaction in sustainable functioning ecosystems. Increasing anthropogenic disturbance poses a threat to AM fungal communities worldwide, but there is little empirical evidence about its potential negative consequences. In this global study, we sequenced AM fungal DNA in soil samples collected from pairs of natural (undisturbed) and anthropogenic (disturbed) plots in two ecosystem types (10 naturally wooded and six naturally unwooded ecosystems). We found that ecosystem type had stronger directional effects than anthropogenic disturbance on AM fungal alpha and beta diversity. However, disturbance increased alpha and beta diversity at sites where natural diversity was low and decreased diversity at sites where natural diversity was high. Cultured AM fungal taxa were more prevalent in anthropogenic than natural plots, probably due to their efficient colonization strategies and ability to recover from disturbance. We conclude that anthropogenic disturbance does not have a consistent directional effect on AM fungal diversity; rather, disturbance equalizes levels of diversity at large scales and causes changes in community functional structure.     

电子废弃物拆解区土壤重金属污染对丛枝菌根真菌多样性的影响

【背景】电子废弃物拆解造成的土壤重金属污染引发的环境问题日益突出,丛枝菌根(arbuscular mycorrhizal,AM)真菌能侵染植物根系并增强植物抵御环境胁迫的能力,具有重要的生态功能和应用潜力。【目的】探究电子废弃物拆解区土壤重金属污染对AM真菌群落结构与多样性的影响,甄别可耐受重金属污染的AM真菌类群。【方法】从浙江台州某典型电子废弃物拆解场地及其周边区域共采集土壤样品12份,针对土壤中AM真菌的18S rRNA基因进行高通量测序以及可操作分类单元(operational taxonomic unit,OTU)相对丰度和多样性指数计算。【结果】该区土壤中AM真菌由原囊霉目(Archaeosporales)、球囊霉目(Glomerales)和多孢囊霉目(Diversisporales)组成,其中球囊霉目占据优势地位。土壤AM真菌多样性指数与重金属的浓度、综合污染指数和潜在生态风险指数间均无显著相关性,但疑似泡囊根生囊霉(Rhizophagus vesiculiferus)的OTU相对丰度与上述重金属污染指标之间均呈显著正相关关系。【结论】R. vesiculiferus可能对重金属污染有极强耐受性,可为今后电子废弃物拆解污染土壤治理提供技术基础。     

Uniting species- and community-oriented approaches to understand arbuscular mycorrhizal fungal diversity

Arbuscular mycorrhizal fungi (AMF) occur in the majority of terrestrial, and some aquatic, habitats worldwide. They are important for the functioning of individual plants and of entire ecosystems. Here, we review trends in research on species- (species recognition, phylogenetic relationships, autecology) and community-level AMF diversity patterns and aim to identify ways of improving the complementarity of these approaches. Research into many aspects of AMF diversity has flourished in parallel with the increasing availability of molecular biology techniques. However, despite their shared goal of understanding AMF biodiversity, species- and community-level perspectives, and the morphological and molecular approaches that underpin them, currently have limited capacity for information exchange. We indicate critical research gaps in AMF species and community characterisation and outline important research directions. We propose steps that could link research using different methods and targeting different aspects of diversity, in order to maximise our understanding of AMF.     

Mechanical soil disturbance as a determinant of arbuscular mycorrhizal fungal communities in semi-natural grassland

While the effect of disturbance on overall abundance and community composition of arbuscular mycorrhizal (AM) fungi has been researched in agricultural fields, less is known about the impact in semi-natural grasslands. We sampled two AM plant species, Festuca brevipila and Plantago lanceolata, from an ongoing grassland restoration experiment that contained replicated plowed and control plots. The AM fungal community in roots was determined using nested PCR and LSU rDNA primers. We identified 38 phylotypes within the Glomeromycota, of which 29 belonged to Glomus A, six to Glomus B, and three to Diversisporaceae. Only three phylotypes were closely related to known morphospecies. Soil disturbance significantly reduced phylotype richness and changed the AM fungal community composition. Most phylotypes, even closely related ones, showed little or no overlap in their distribution and occurred in either the control or disturbed plots. We found no evidence of host preference in this system, except for one phylotype that preferentially seemed to colonize Festuca. Our results show that disturbance imposed a stronger structuring force for AM fungal communities than did host plants in this semi-natural grassland.     

The rise and fall of arbuscular mycorrhizal fungal diversity during ecosystem retrogression

Ecosystem retrogression following long‐term pedogenesis is attributed to phosphorus (P) limitation of primary productivity. Arbuscular mycorrhizal fungi (AMF) enhance P acquisition for most terrestrial plants, but it has been suggested that this strategy becomes less effective in strongly weathered soils with extremely low P availability. Using next generation sequencing of the large subunit ribosomal RNA gene in roots and soil, we compared the composition and diversity of AMF communities in three contrasting stages of a retrogressive >2‐million‐year dune chronosequence in a global biodiversity hotspot. This chronosequence shows a ~60‐fold decline in total soil P concentration, with the oldest stage representing some of the most severely P‐impoverished soils found in any terrestrial ecosystem. The richness of AMF operational taxonomic units was low on young (1000's of years), moderately P‐rich soils, greatest on relatively old (~120 000 years) low‐P soils, and low again on the oldest (>2 000 000 years) soils that were lowest in P availability. A similar decline in AMF phylogenetic diversity on the oldest soils occurred, despite invariant host plant diversity and only small declines in host cover along the chronosequence. Differences in AMF community composition were greatest between the youngest and the two oldest soils, and this was best explained by differences in soil P concentrations. Our results point to a threshold in soil P availability during ecosystem regression below which AMF diversity declines, suggesting environmental filtering of AMF insufficiently adapted to extremely low P availability.     

Spatial scaling of arbuscular mycorrhizal fungal diversity is affected by farming practice

Evidence suggests that microbial communities show patterns of spatial scaling which can be driven by geographical distance and environmental heterogeneity. Here we demonstrate that human management can have a major impact on microbial distribution patterns at both the local and landscape scale. Mycorrhizal fungi are vital components of terrestrial ecosystems, forming a mutualistic symbiosis with plant roots which has a major impact on above ground ecology and productivity. We used contrasting agricultural systems to investigate the spatial scaling of the most widespread mycorrhizal fungus group, the arbuscular mycorrhizal fungi (AMF). Using multiple sampling sites with a maximum separation of 250 km we describe for the first time the roles which land management, environmental heterogeneity and geographical distance play in determining spatial patterns of microbial distribution. Analysis of AMF taxa–area relationships at each sampling site revealed that AMF diversity and spatial turnover was greater under organic relative to conventional farm management. At the regional scale (250 km) distance–decay analyses showed that there was significant change in AMF community composition with distance, and that this was greater under organic relative to conventional management. Environmental heterogeneity was found to be the major factor determining turnover of AMF taxa at the landscape scale. Overall we demonstrate that human management can play a key role in determining the turnover of microbial communities at both the local and regional scales.     

Functional diversity of arbuscular mycorrhizal fungal isolates in relation to extraradical mycelial networks

We investigated the functional significance of extraradical mycorrhizal networks produced by geographically different isolates of the arbuscular mycorrhizal fungal (AMF) species Glomus mosseae and Glomus intraradices. A two-dimensional experimental system was used to visualize and quantify intact extraradical mycelium (ERM) spreading from Medicago sativa roots. Growth, phosphorus (P) and nitrogen (N) nutrition were assessed in M. sativa plants grown in microcosms. The AMF isolates were characterized by differences in extent and interconnectedness of ERM. Phenotypic fungal variables, such as total hyphal length, hyphal density, hyphal length per mm of total or colonized root length, were positively correlated with M. sativa growth response variables, such as total shoot biomass and plant P content. The utilization of an experimental system in which size, growth rate, viability and interconnectedness of ERM extending from mycorrhizal roots are easily quantified under realistic conditions allows the simultaneous evaluation of different isolates and provides data with a predictive value for selection of efficient AMF.     

Disclosing arbuscular mycorrhizal fungal biodiversity in soil through a land-use gradient using a pyrosequencing approach

The biodiversity of arbuscular mycorrhizal fungi (AMF) communities present in five Sardinian soils (Italy) subjected to different land-use (tilled vineyard, covered vineyard, pasture, managed meadow and cork-oak formation) was analysed using a pyrosequencing-based approach for the first time. Two regions of the 18S ribosomal RNA gene were considered as molecular target. The pyrosequencing produced a total of 10924 sequences: 6799 from the first and 4125 from the second target region. Among these sequences, 3189 and 1003 were selected to generate operational taxonomic units (OTUs) and to evaluate the AMF community richness and similarity: 117 (37 of which were singletons) and 28 (nine of which were singletons) unique AMF OTUs were detected respectively. Within the Glomeromycota OTUs, those belonging to the Glomerales order were dominant in all the soils. Diversisporales OTUs were always detected, even though less frequently, while Archaeosporales and Paraglomerales OTUs were exclusive of the pasture soil. Eleven OTUs were shared by all the soils, but each of the five AMF communities showed particular features, suggesting a meaningful dissimilarity among the Glomeromycota populations. The environments with low inputs (pasture and covered vineyard) showed a higher AMF biodiversity than those subjected to human input (managed meadow and tilled vineyard). A reduction in AMF was found in the cork-oak formation because other mycorrhizal fungal species, more likely associated to trees and shrubs, were detected. These findings reinforce the view that AMF biodiversity is influenced by both human input and ecological traits, illustrating a gradient of AMF communities which mirror the land-use gradient. The high number of sequences obtained by the pyrosequencing strategy has provided detailed information on the soil AMF assemblages, thus offering a source of light to shine on this crucial soil microbial group.     

Responses of soil microbial catabolic diversity to arbuscular mycorrhizal inoculation and soil disinfection

Although it is usually admitted that arbuscular mycorrhizal (AM) fungi are key components in soil bio-functioning, little is known on the response of microbial functional diversity to AM inoculation. The aims of the present study were to determine the influence of Glomus intraradices inoculum densities on plant growth and soil microflora functional diversity in autoclaved soil or non-disinfected soil. Microbial diversity of soil treatments was assessed by measuring the patterns of in situ catabolic potential of microbial communities. The soil disinfection increased sorghum growth, but lowered catabolic evenness (4.8) compared to that recorded in the non-disinfected soil (6.5). G. intraradices inoculation induced a higher plant growth in the autoclaved soil than in the non-disinfected soil. This AM effect was positively related to inoculum density. Catabolic evenness and richness were positively correlated with the number of inoculated AM propagules in the autoclaved soil, but negatively correlated in the non-disinfected soil. In addition, after soil disinfection and AM inoculation, these microbial functionality indicators had higher values than in the autoclaved or in the non-disinfected soil without AM inoculation. These results are discussed in relation to the ecological influence of AM inoculation, with selected fungal strains and their associated microflora on native soil microbial activity.     

玉米秸秆还田对土壤丛枝菌根真菌群落的影响

为揭示农业管理活动对土壤丛枝菌根(AM)真菌的影响机制,基于Illumina Miseq高通量测序平台以及脂肪酸指纹图谱方法,研究了连续4年玉米秸秆还田后,AM真菌群落组成、AM真菌生物量及其与土壤环境因子间的相互关系.结果表明:所获得的2430个AM真菌OTUs从门到种依次分类,共分为1门、3纲、4目、8科、10属、143种,但不同处理间AM真菌群落丰富度(Chao1指数和ACE指数)、多样性(Shannon、Simpson多样性指数)没有显著差异.AM真菌中类球囊霉属、球囊霉属为优势属.随秸秆还田量的增加,球囊霉属丰度降低;3000、9000 kg·hm^-2秸秆还田量下,类球囊霉属、无梗囊霉属的丰度与对照(0 kg·hm^-2)间差异达极显著水平;原囊霉属、类球囊霉属、球囊霉属在3000 kg·hm^-2秸秆还田量下与对照间差异显著,非度量多维尺度(NMDS)分析表明,9000、12000 kg·hm^-2的秸秆还田量下土壤AM真菌β多样性与对照间聚集度较其他处理相差较远,秸秆还田量对AM真菌β多样性的影响显著.多元分析结果能在累积变量82.8%上揭示土壤主要理化性状与AM真菌丰富度、多样性的空间变化关系.土壤全氮、碱解氮是影响以磷脂脂肪酸表征的土壤主要微生物类群生物量以及以中性脂肪酸表征的AM真菌生物量的主要因子.持续玉米秸秆还田改变了AM真菌属水平上的分类学组成;随秸秆还田量的增加,AM真菌特有的微生物种类减少,AM真菌群落组成间的相似度下降;秸秆还田增加了土壤AM真菌生物量及其占土壤微生物总生物量的比例.     

喀斯特植被演替过程土壤丛枝菌根真菌(AMF)多样性

喀斯特生态系统维持了丰富的微生物多样性,丛枝菌根真菌(Arbuscular mycorrhizal fungi,AMF)结构和组成会随喀斯特植被演替而改变。以贵州贵阳花溪、毕节织金和关岭花江典型喀斯特区域按时空替代法采集了乔木林、灌木林和草本群落样地土壤,采用Illumina HiSeq分子测序技术,通过OTU聚类分析、物种注释及数据库比对,探索了喀斯特不同演替阶段土壤AMF物种多样性。结果表明:(1)喀斯特生境土壤获得球囊菌门Glomeromycota OTU为275个,分属于4目8科13属19种,属水平上AMF丰度表明根内根孢囊霉属Rhizophagus为优势属,花江拥有最高AMF丰富度,缩隔球囊霉Septoglomus constrictum、根内根孢囊霉Rhizophagus intraradices、Claroideoglomus sp. MIB8381和稀有内养囊霉Entrophospora infrequens均分布于各样地的不同植被演替阶段,为常见种。(2)AM真菌多样性Shannon指数与Simpson指数在不同演替阶段表现为花溪:乔木≈灌木草本(P0.05)、花江:灌木≈草本乔木(P0.05)、织金:乔木灌木草本,但差异不显著,Chao1和Abundance-based coverag estimator(ACE)指数表现为花江灌木≈草地乔木(P0.05)。(3)Spearman相关性分析表明土壤全磷与AMF ACE指数显著负相关,且与Chao1指数极显著负相关;速效磷与Shannon和Simpson指数显著负相关。(4)典范对应分析(Canonical Correlation Analysis,CCA)表明土壤全氮、速效氮、有机质、全磷和速效钾与AMF群落分布有显著相关性。结果表明喀斯特植被演替过程中土壤丛枝菌根真菌多样性随着演替进行或升高或降低,无一致变化规律,并与土壤理化性质关系密切,其中以磷的影响最大。     

Spatial characterization of arbuscular mycorrhizal fungal molecular diversity at the submetre scale in a temperate grassland

Although arbuscular mycorrhizal fungi (AMF) form spatially complex communities in terrestrial ecosystems, the scales at which this diversity manifests itself is poorly understood. This information is critical to the understanding of the role of AMF in plant community composition. We examined small-scale (submetre) variability of AMF community composition (terminal restriction fragment length polymorphism fingerprinting) and abundance (extraradical hyphal lengths) in two 1 m(2) plots situated in a native grassland ecosystem of western Montana. Extraradical AMF hyphal lengths varied greatly between samples (14-89 m g soil(-1)) and exhibited spatial structure at scales <30 cm. The composition of AMF communities was also found to exhibit significant spatial autocorrelation, with correlogram analyses suggesting patchiness at scales <50 cm. Supportive of overall AMF community composition analyses, individual AMF ribotypes corresponding to specific phylogenetic groups exhibited distinct spatial autocorrelation. Our results demonstrate that AMF diversity and abundance can be spatially structured at scales of <1 m. Such small-scale heterogeneity in the soil suggests that establishing seedlings may be exposed to very different, location dependent AMF communities. Our results also have direct implications for representative sampling of AMF communities in the field.