Omega-Oxidation of Monocarboxylic Acids in Rat Brain

The accumulation of dicarboxylic acids is a prominent feature of inborn and toxin induced disorders of fatty acid metabolism which are characterized by impaired mental status. The formation of dicarboxylic acids is also a critical step in liver in the induction of intracellular fatty acid binding proteins and the proliferation of peroxisomes. In order to understand what potential roles dicarboxylic acids have in brain, we examined the extent of omega-oxidation in rat brain. Homogenates of rat brain catalyze the omega-oxidation of monocarboxylic acids with a specific activity of between 0.87 and 5.23 nmol/mg of post-mitochondrial protein/h, depending on the substrate. The activity is remarkably high, between one-fourth and 4 times the activity found in rat liver, depending on the chain length of the substrate. Specific activity increases with increasing chain length of the substrate. The omega-oxidation of palmitic acid is linear over a range of 0.125–3.0 mg of protein and 5–50 M substrate for up to 45 minutes of incubation. The product of omega-oxidation in brain is almost exclusively dicarboxylic acid. Cultured rat neurons, astrocytes, and oligodendrocytes all contain omega-oxidation activity. Western blots of rat brain homogenate demonstrate a protein that is recognized by antibody to rat liver CYP4A omega-hydroxylase. These results demonstrate that the omega-oxidative pathway is prominent in brain and could play a role in brain fatty acid metabolism.     

Dipeptides and Diketopiperazines in the Yamato-791198 and Murchison Carbonaceous Chondrites

The Yamato-791198 and Murchison carbonaceouschondrites were analyzed for dipeptides anddiketopiperazines as well as amino acids and hydantoins bygas chromatography combined with mass spectrometry. Glycylglycine (gly-gly) and cyclo(gly-gly) were detected atthe concentrations of 11 and 18 pmol g^-1, respectively,in Yamato-791198, and 4 and 23 pmol g^-1, respectively,in Murchison. No other dipeptide and diketopiperazine weredetected. Five hydantoins were detected at 8 to 65 pmolg^-1 in Yamato-791198 and seven in Murchison at 6 to 104pmol g^-1. Total concentration of the glycine (gly)dimers is approximately four orders of magnitude less thanthe concentration of free gly in Yamato-791198, and threeorders of magnitude less than that in Murchison. Theabsence of L- and LL-stereoisomers of dipeptides consistingof protein amino acids indicates that gly-gly andcyclo(gly-gly) detected are native to the chondrites and not fromterrestrial contaminants. A possibility was discussed thatthe gly dimers might have been formed by condensation of glymonomers but not formed through N-carboxyanhydrides of gly.     

Relative Amino Acid Concentrations as a Signature for Parent Body Processes of Carbonaceous Chondrites

Most meteorites are thought to have originated from objects in the asteroid belt. Carbonaceous chondrites, which contain significant amounts of organic carbon including complex organiccompounds, have also been suggested to be derived from comets. The current model for the synthesis of organic compounds found in carbonaceous chondrites includes the survival of interstellarorganic compounds and the processing of some of these compounds on the meteoritic parent body. The amino acid composition of fiveCM carbonaceous chondrites, two CIs, one CR, and one CV3 havebeen measured using hot water extraction-vapor hydrolysis,OPA/NAC derivatization and high-performance liquid chromatography(HPLC). Total amino acid abundances in the bulk meteorites as well as the amino acid concentrations relative to glycine = 1.0for -alanine, -aminoisobutyric acid and D-alaninewere determined. Additional data for three Antarctic CM meteorites were obtained from the literature. All CM meteoritesanalyzed in this study show a complex distribution of amino acidsand a high variability in total concentration ranging from 15 300 to 5800 parts per billion (ppb), while the CIs show a total amino acid abundance of 4300 ppb. The relatively(compared to glycine) high AIB content found in all the CMs is astrong indicator that Strecker-cyanohydrin synthesis is thedominant pathway for the formation of amino acids found inthese meteorites. The data from the Antarctic CM carbonaceous chondrites are inconsistent with the results from the other CMs,perhaps due to influences from the Antarctic ice that were effective during their residence time. In contrast to CMs, the data from the CI carbonaceous chondrites indicate that the Strecker synthesis was not active on their parent bodies.     

Activation of the C2 to C19 Monocarboxylic Acids by Pseudomonas

Cell extracts of pseudomonads grown on hexadecanoic acid contained C₁₁ to C₁₉ acyl thiokinase, C₄ to C₁₄ acyl thiokinase, C₂ to C₆ acyl thiokinase, acetyl thiokinase, and acetokinase.     

A Search for Extraterrestrial Amino Acids in Carbonaceous Antarctic Micrometeorites

Antarctic micrometeorites (AMMs) in the 100–400 m size range are the dominant mass fraction of extraterrestrial material accreted by the Earth today. A high performance liquid chromatography (HPLC) based technique exploited at the limits of sensitivity has been used to search for the extraterrestrial amino acids -aminoisobutyric acid (AIB) and isovaline in AMMs. Five samples, each containing about 30 to 35 grains, were analyzed. All the samples possess a terrestrial amino acid component, indicated by the excess of the L-enantiomers of common protein amino acids. In only one sample (A91) was AIB found to be present at a level significantly above the background blanks. The concentration of AIB (280 ppm), and the AIB/isovaline ratio (10), in this sample are both much higher than in CM chondrites. The apparently large variation in the AIB concentrations of the samples suggests that AIB may be concentrated in rare subset of micrometeorites. Because the AIB/isovaline ratio in sample A91 is much larger than in CM chondrites, the synthesis of amino acids in the micrometeorite parent bodies might have involved a different process requiring an HCN-rich environment, such as that found in comets. If the present day characteristics of the meteorite and micrometeorite fluxes can be extrapolated back in time, then the flux of large carbonaceous micrometeorites could have contributed to the inventory of prebiotic molecules on the early Earth.     

Quantitative Method for the Gas Chromatographic Analysis of Short-Chain Monocarboxylic and Dicarboxylic Acids in Fermentation Media

A method for the preparation and gas chromatographic analysis of the butyl esters of volatile (C-1-C-7) and nonvolatile (lactic, succinic, and fumaric) acids in microbial fermentation media is presented. Butyl esters were prepared from the dry salts of the acids. The esters were separated by temperature programming on a column of Chromosorb W coated with Dexsil 300 GC liquid phase and analyzed with a flame ionization detector. Apparent recoveries with butanol-HCl or butanol-H2SO4 as butylating agents were 80 to 90% for most acids. Chromatographic profiles of the butyl esters demonstrated that both volatile and nonvolatile acids can be detected and separated in 24 min on a single column. Standard calibration curves (peak area versus concentration) of the butyl esters were linear in the range of 5 to 40 mumol of acid per ml. The advantages of using an internal standard (heptanoic acid) for quantitating fatty acids in a mixture are given. Chromatograms of butylated fermentation media in which rumen anaerobic bacteria were grown illustrated that this method is useful for determining short-chain volatile and nonvolatile acids of toxonomic significance.     

Seed Dormancy in Red Rice : VI. Monocarboxylic Acids: A New Class of pH-Dependent Germination Stimulants

The addition of an elicitor (glucan) to Phaseolus vulgaris cell suspension cultures increased the formation of the phytoalexin phaseollin. Intracellular pH and phosphate concentrations were studied with ³¹P nuclear magnetic resonance spectroscopy on elicitor-treated cells which were aerated during the nuclear magnetic resonance measurement. The pH of the vacuole and to a lesser extent the pH of the cytoplasm were affected at 10 minutes after elicitor addition; a decrease in pH from 5.3 to 4.8 was noted in the vacuole and from 7.46 to 7.28 in the cytoplasm. The ratio between the amount of Pi in the vacuole to that in the cytoplasm also changed within 10 minutes after elicitor addition. The signal for ATP (β-ATP) was low after elicitor addition and was high again 23 hours after elicitation. Forty-eight hours after elicitor addition, vacuolar and cytoplasmic pH had almost returned to their initial values. The rapid change in vacuolar and cytoplasmic pH may cause the change of metabolism that occurs in elicitor-treated P. vulgaris cells.     

Molecular diversity of microbial eukaryotes in sea water from Fildes Peninsula,King George Island,Antarctica

Data on Antarctic coastal sites remain scarce and are generally limited to microscopy; the diversity of coastal Antarctic ecosystems has long been underestimated. The diatom-dominant community in the coastal sea waters of the Fildes Peninsula has been described according to traditional protocols. Molecular diversity of microbial eukaryotes (≤20 µm) from Great Wall Cove and Ardley Cove, Fildes Peninsula, has been determined by Illumina MiSeq2000 sequencing. Inferred metabolisms of summer phytoplankton in the two coves are characterised by autotrophy and heterotrophy. The frequent occurrence of such nanoflagellates as dinoflagellates, Cryptophyta, Stramenopiles, Pyramimonas, Telonema, and Cryothecomonas is predicted to be important in these Antarctic coastal communities. Sea water exchange exists between the two coves when high tide occurs, indicating that there appears to be mixing between the microbial communities in the two coves. Cluster analysis of the microbial eukaryote composition at the phylum and genus levels reveals a conservation of the community composition between the two coves. The inner stations of Great Wall Cove represented by three shoal samples (G1, G2, and G3) are clustered closely together, surrounded by islands and formed into a semi-closed body of water. The samples from the outer stations G4 and G5 of Great Wall Cove, which are separated from the other three Great Wall stations, are more similar to the Ardley Cove samples. Sea water exchange between the outer basins might be the effect of their community compositions. The nanoplankton diversity in Great Wall Cove is richer than in Ardley Cove, according to the α-diversity index.     

Molecular cloning and expression analysis of major intrinsic protein gene in Chlamydomonas sp. ICE-L from Antarctica

Extremophiles - Major intrinsic proteins (MIPs) form channels facilitating the passive transport of water and other small polar molecules across membranes. In this study, the complete open reading...     

鞣花酸类化合物在植物界的分布及其生物活性

本文综述了自然存在的鞣花酸类化合物的种类及其在植物界的分布,并对其生物活性进行了概述,为进一步开发利用鞣花酸类化合物打下基础。目前发现自然界存在的鞣花酸类化合物约有17种,主要分布于大戟科中的大戟属和叶下珠属、蔷薇科中的悬钩子属、委陵菜属和草莓属,在珙桐科、使君子科、石榴科和桃金娘科等科属中均有分布,为自然界分布较为广泛的一类化学成分。鞣花酸类化合物具有抗肿瘤、抗病毒、抗氧化、抗菌及增强免疫作用等多种生物活性。     

Activation Methods of Carbonaceous Materials Obtained from Agricultural Waste

Activated carbons belong to the most widely used adsorbent materials. The utility of these materials mainly depends on their chemical surface and porous structure. The method of activation and the nature of the used precursor greatly influence the pore structure and surface functional groups of the activated carbon. Therefore, the main objective of current investigations is to develop or modify the activation method in an optimal manner using appropriate precursors. This review compiles the results of various studies on the synthesis of activated carbons from agricultural waste. Various activation methods, such as physical, chemical, physicochemical, and microwave activation, are discussed. The effects of carbonization and activation parameters, such as temperature, activating agent, and residence time, toward the properties of the activated carbon are reviewed.     

Studies on the Constituents and Distribution of Fatty Acids in Seed Oils from Pinaceae of China

This paper deals with the constituents of fatty acids from the seed oils of Pinaceae in China, including 30 species belonging to 8 genera. Discovered are three characteristic fatty acids, i.e. Cis-5,9-octadecadienoic acid, Cis-5,9,12-octadecatrienoic acid and Cis-5, 11, 14-eicosatrienoic acid. Based on the data obtained, the distribution of the three characteristic fatty acids in Pinaceae of China is also discussed.     

Molecular Mechanisms for Sweet-suppressing Effect of Gymnemic Acids

Gymnemic acids are triterpene glycosides that selectively suppress taste responses to various sweet substances in humans but not in mice. This sweet-suppressing effect of gymnemic acids is diminished by rinsing the tongue with γ-cyclodextrin (γ-CD). However, little is known about the molecular mechanisms underlying the sweet-suppressing effect of gymnemic acids and the interaction between gymnemic acids versus sweet taste receptor and/or γ-CD. To investigate whether gymnemic acids directly interact with human (h) sweet receptor hT1R2 + hT1R3, we used the sweet receptor T1R2 + T1R3 assay in transiently transfected HEK293 cells. Similar to previous studies in humans and mice, gymnemic acids (100 μg/ml) inhibited the [Ca²⁺]_i responses to sweet compounds in HEK293 cells heterologously expressing hT1R2 + hT1R3 but not in those expressing the mouse (m) sweet receptor mT1R2 + mT1R3. The effect of gymnemic acids rapidly disappeared after rinsing the HEK293 cells with γ-CD. Using mixed species pairings of human and mouse sweet receptor subunits and chimeras, we determined that the transmembrane domain of hT1R3 was mainly required for the sweet-suppressing effect of gymnemic acids. Directed mutagenesis in the transmembrane domain of hT1R3 revealed that the interaction site for gymnemic acids shared the amino acid residues that determined the sensitivity to another sweet antagonist, lactisole. Glucuronic acid, which is the common structure of gymnemic acids, also reduced sensitivity to sweet compounds. In our models, gymnemic acids were predicted to dock to a binding pocket within the transmembrane domain of hT1R3.     

Distribution and diversity of soil protozoa in the McMurdo Dry Valleys of Antarctica

The polar desert soils of the McMurdo Dry Valley region support a limited water film community dominated by flagellates, amoebae, and nematodes. This study describes the protozoa and compares their distribution to nematodes. In 50 samples collected from 12 locations, rotifers and tardigrades were infrequent, and ciliates and testacea were rare. Soil protozoa occurred at all sites but the dominant nematode, Scottnema lindsayae (Timm 1971), did not, indicating soil habitat factors limiting nematode distribution are not limiting to protozoa. In contrast to the nematode species, which are all endemic to Antarctica, there were no endemic protozoan morphospecies found in our samples. The protozoan abundance was several orders of magnitude greater than that of the nematodes, and the species diversity was much greater. Most of the protozoa grew better at lower incubation temperatures. The ubiquitous distribution of protozoa suggests their importance in soil food webs and nutrient cycling in the dry valleys.     

分子信标核酸检测技术研究进展

介绍了分子信标设计和分子信标核酸检测原理、技术特性和在基因突变大规模自动化检测中的应用. 分子信标是一种基于荧光共振能量转移现象设计的发卡型寡核苷酸探针,空间结构上呈茎环结构, 环序列是与靶核酸互补的探针,茎序列由与靶序列无关的互补序列构成,茎的一端连上荧光分子,另一端连上淬灭分子.通过空间结构改变决定分子信标发射荧光特性,从而对核酸进行定量检测. 分子信标技术具有操作简单、敏感、特异、可对核酸进行液相实时检测和对活体内核酸动态进行检测等特点,已应用于HIV辅助受体基因等基因突变的大规模自动化检测,是一种新型核酸定量检测技术.     

Molecular analysis of bacterial diversity in kerosene-based drilling fluid from the deep ice borehole at Vostok, East Antarctica

Decontamination of ice cores is a critical issue in phylogenetic studies of glacial ice and subglacial lakes. At the Vostok drill site, a total of 3650 m of ice core have now been obtained from the East Antarctic ice sheet. The ice core surface is coated with a hard-to-remove film of impure drilling fluid comprising a mixture of aliphatic and aromatic hydrocarbons and foranes. In the present study we used 16S rRNA gene sequencing to analyze the bacterial content of the Vostok drilling fluid sampled from four depths in the borehole. Six phylotypes were identified in three of four samples studied. The two dominant phylotypes recovered from the deepest (3400 and 3600 m) and comparatively warm (-10 degrees C and -6 degrees C, respectively) borehole horizons were from within the genus Sphingomonas, a well-known degrader of polyaromatic hydrocarbons. The remaining phylotypes encountered in all samples proved to be human- or soil-associated bacteria and were presumed to be drilling fluid contaminants of rare occurrence. The results obtained indicate the persistence of bacteria in extremely cold, hydrocarbon-rich environments. They show the potential for contamination of ice and subglacial water samples during lake exploration, and the need to develop a microbiological database of drilling fluid findings.     

Diversity and Distribution of Deep-Sea Shrimps in the Ross Sea Region of Antarctica

Although decapod crustaceans are widespread in the oceans, only Natantia (shrimps) are common in the Antarctic. Because remoteness, depth and ice cover restrict sampling in the South Ocean, species distribution modelling is a useful tool for evaluating distributions. We used physical specimen and towed camera data to describe the diversity and distribution of shrimps in the Ross Sea region of Antarctica. Eight shrimp species were recorded: Chorismus antarcticus; Notocrangon antarcticus; Nematocarcinus lanceopes; Dendrobranchiata; Pasiphaea scotiae; Pasiphaea cf. ledoyeri; Petalidium sp., and a new species of Lebbeus. For the two most common species, N. antarcticus and N. lanceopes, we used maximum entropy modelling, based on records of 60 specimens and over 1130 observations across 23 sites in depths from 269 m to 3433 m, to predict distributions in relation to environmental variables. Two independent sets of environmental data layers at 0.05° and 0.5° resolution respectively, showed how spatial resolution affected the model. Chorismus antarcticus and N. antarcticus were found only on the continental shelf and upper slopes, while N. lanceopes, Lebbeus n. sp., Dendrobranchiata, Petalidium sp., Pasiphaea cf. ledoyeri, and Pasiphaea scotiae were found on the slopes, seamounts and abyssal plain. The environmental variables that contributed most to models for N. antarcticus were depth, chlorophyll-a concentration, temperature, and salinity, and for N. lanceopes were depth, ice concentration, seabed slope/rugosity, and temperature. The relative ranking, but not the composition of these variables changed in models using different spatial resolutions, and the predicted extent of suitable habitat was smaller in models using the finer-scale environmental layers. Our modelling indicated that shrimps were widespread throughout the Ross Sea region and were thus likely to play important functional role in the ecosystem, and that the spatial resolution of data needs to be considered both in the use of species distribution models.     

Distribution of Molecular Scaffolds and R-Groups Isolated from Large Compound Databases

We describe an approach to isolate molecular scaffolds and R-groups from known chemical compounds in order to generate scaffold and R-group databases from two large compound collections, Optiverse^TM and Maybridge^TM. The distributions of molecular scaffolds and R-groups in the parent databases were analysed and compared. We find that a limited number of scaffolds and R-groups account for the majority of database compounds and that most of the scaffolds occur only once or twice in the compound databases. Diversity analysis suggests that the compound and scaffold databases have similar molecular diversity. Implications for library design are discussed.Electronic Supplementary Material available.