Ecological regime shifts in salinised wetland systems. II. Factors affecting the dominance of benthic microbial communities

This paper is the second in a pair investigating potential mechanisms for ecological regime change in salinising wetlands. The first paper in this series focused on the responses of the salt-tolerant submerged macrophyte community to salinity. In this second paper, we investigated some of the environmental conditions required for initiation and dominance of benthic microbial communities using a combination of experimental and observational data. Two experiments were carried out. One investigated the importance of prior establishment of benthic microbial communities on their ability to maintain prevalence over macrophyte colonisation (‘persistence’ experiment), while the other investigated hydrology and its effect on sediment perturbation, potential nutrient release and subsequent benthic microbial community establishment (‘flooding’ experiment). The ‘persistence’ experiment measured the biomass of benthic microbial communities and emergence of macrophytes from sediments kept either wet or dry for 4 weeks then flooded at a range of salinities. Benthic microbial biomass was similar across all of the salinities tested (15, 45 and 70 ppt), with a slight increase at higher salinities, suggesting that none of these limited benthic microbial community development. Pre-wetting of sediments usually increased benthic microbial community biomass and reduced macrophyte germination, but the latter was attributed to the presence of anoxic sediments rather than the increased benthic microbial community biomass. Germinating macrophytes emerged through benthic microbial communities or dense heterotrophic bacterial blooms, demonstrating that they could become dominant even when another community was already established. Field data supported these results, suggesting that the development of benthic microbial communities is not limited by salinity alone, but includes other factors, such as the water regime. In the ‘flooding’ experiment, the largest differences in nutrient concentrations ultimately lay between the pre-wet and pre-dry treatments (due to the greater release of nutrients and development of anoxia in the latter) rather than those subjected to fast versus slow flooding. In response to this, highest benthic microbial community biomass was in treatments with pre-wet sediment, corresponding with lower phytoplankton biomass.     

Short-Term Responses of the Natural Planktonic Bacterial Community to the Changing Water Properties in an Estuarine Environment: Ectoenzymatic Activity,Glucose Incorporation,and BiomassProduction

The possibility that two principlal bacterial communities expressing different levels of heterotrophic activity might coexist in an estuarine ecosystem (Ria de Aveiro, Portugal) and could quickly respond to tidal fluctuations of environmental factors was experimentally tested in diffusion chambers by swapping the dissolved components of the natural water between the two communities and comparing their reactivity against the unaltered controls. The results for ectoenzymatic activity (Leuaminopeptidase and β-glucosidase), glucose incorporation and biomass production after transference of the marine bacterial community to brackish water showed maxima in the range of 241–384% of the control values. The opposite transference of the brackish-water bacterial community to marine water produced maximal decreases to 0.14–0.58% of the control values. In a reverse experiment, designed as the return to the initial conditions after 2 hours of the first exposure, the marine community rapidly re-acquired the characteristic low profile of activity. Contrastingly, the negative effects of 2 hours of exposure to marine water on the activity of the brackish water bacteria persisted, at least for 4 hours, after return to their own water. The apparent short-term irreversibility of the decline in activity of the brackish water bacteria when exposed to marine water, in parallel with the quick and reversible positive response of the marine water bacteria to the brackish water, suggests the development of two distinct bacterioplankton communities adapted to the environmental conditions prevailing at distinct sections of the estuary. The reactivity to environmental changes demonstrated by the two communities allows the prediction of estuarine profiles of bacterial activity steeper than those expected from the conservative transport of bacterial cells associated with tidal currents.     

Towards Solutions for State vs. Local Community Conflicts Over Forestland: The Impact of Formal Recognition of User Rights in Krui, Sumatra, Indonesia

In 1998, a decree issued by the Indonesian government enabled communities in Krui, Indonesia, to register for concession rights over the area of state forest land planted with their agroforests. Registration would provide farmers with the legal right to manage and benefit from these agroforests. In 2005, we found that even though none of the Krui communities has ever formally applied for their concession rights, the decree has been instrumental in stopping outsiders’ attempts to appropriate these agroforests. Farmers within the state forest zone felt secure enough to continue investing in their complex agroforestry systems, while planting trees reinforced their feeling of security. We conclude that it is not the legal status of tenure, but the perception of tenure security that is of significance in people’s land-use decisions. These results are considered in the wider context of state–community conflicts over forest land in the tropics.

CWM and Rao’s quadratic diversity: a unified framework for functional ecology

Assessing the effects of environmental constraints on community structure often relies on methods that consider changes in species functional traits in response to environmental processes. Various indices have been proposed to measure relevant aspects of community trait composition from different viewpoints and perspectives. Among these, the ‘community-weighted mean trait value’ (CWM) and the Rao coefficient have been widely used in ecological research for summarizing different facets of functional composition and diversity. Analyzing changes in functional diversity of bee communities along a post-fire successional gradient in southern Switzerland we show that these two measures may be used to describe two complementary aspects of community structure, such as the mean and the dispersion of functional traits within a given species assemblage. While CWM can be adequately used to summarize shifts in mean trait values within communities due to environmental selection for certain functional traits, the Rao coefficient can be effectively applied to analyze patterns of trait convergence or divergence compared to a random expectation.     

Response of floodplain grassland plant communities to altered water regimes

Floodplain grasslands are often composed of a mosaic of plant communities controlled by hydrological regime. This article examines the sensitivity of floodplain grassland plant communities to water regime using reciprocal transplantation of an inundation grassland and a flood-meadow within an English floodplain. Experimental treatments comprised control, transplanted and lifted plots; the last treatment, in order to elucidate any disturbance effects of transplantation. Plant community response was analysed using species abundance and their ecological traits. Results from both communities showed substantial annual variations related to hydrology, including significant species changes, but generally, vegetation seemed to be responding to drier conditions following a major flood event. This ‘drying’ trend was characterised by increased species diversity, a greater abundance of competitive species and fewer typical wetland plants. Transplanted community composition increasingly resembled receptor sites and transplant effects were most pronounced the first year after treatment for both vegetation types. Differential responses to water regime were detected for the two plant communities. The inundation grassland community was particularly dynamic with a composition that rapidly reflected drying conditions following the major flood, but transplantation into a drier flood-meadow site prompted little additional change. The flood-meadow community appeared more resistant to post-inundation drying, but was sensitive to increased wetness caused by transplantation into inundation grassland, which significantly reduced six species while none were significantly favoured. The effects of disturbance caused by lifting the transplants were limited in both communities, although five species showed significant annual fluctuations. The study shows that small alterations in water regime can prompt rapid vegetation changes and significant plant species responses in floodplain grasslands, with effects probably magnified through competitive interactions. The dynamic properties of floodplain vegetation demonstrated by this study suggest that its classification, management and monitoring are challenging and ideally should be based on long-term studies.     

Phytoplankton growth and stoichiometric responses to warming,nutrient addition and grazing depend on lake productivity and cell size

Global change involves shifts in multiple environmental factors that act in concert to shape ecological systems in ways that depend on local biotic and abiotic conditions. Little is known about the effects of combined global change stressors on phytoplankton communities, and particularly how these are mediated by distinct community properties such as productivity, grazing pressure and size distribution. Here, we tested for the effects of warming and eutrophication on phytoplankton net growth rate and C:N:P stoichiometry in two phytoplankton cell size fractions (<30 µm and >30 µm) in the presence and absence of grazing in microcosm experiments. Because effects may also depend on lake productivity, we used phytoplankton communities from three Dutch lakes spanning a trophic gradient. We measured the response of each community to multifactorial combinations of temperature, nutrient, and grazing treatments and found that nutrients elevated net growth rates and reduced carbon:nutrient ratios of all three phytoplankton communities. Warming effects on growth and stoichiometry depended on nutrient supply and lake productivity, with enhanced growth in the most productive community dominated by cyanobacteria, and strongest stoichiometric responses in the most oligotrophic community at ambient nutrient levels. Grazing effects were also most evident in the most oligotrophic community, with reduced net growth rates and phytoplankton C:P stoichiometry that suggests consumer‐driven nutrient recycling. Our experiments indicate that stoichiometric responses to warming and interactions with nutrient addition and grazing are not universal but depend on lake productivity and cell size distribution.     

Same river,different values and why it matters

Summary Examination of the values that people assign to specific natural places is likely to be useful for environmental decision‐making but is an underdeveloped area of socio‐psychological research. A mail survey was used to examine the differences and similarities in values assigned by people to the Loddon River in south‐eastern Australia. Environmental, social and economic values were explored across five different community types: urban residents, rural residents, natural resource management (NRM) professionals, environmental group members (EGM) and landholders. While urban residents, rural residents and landholders had similar responses, NRM professionals and EGM placed much stronger emphasis on environmental values derived from the river, and much less emphasis on economic values. Members of two community types (EGM and NRM professionals) responded in a relatively homogenous way, within a narrow range of response options. By contrast, three community types (urban residents, rural residents and landholders) responded in more diverse ways. There were similarities in the social values (historical and aesthetic) expressed by the different community types, suggesting common points for stakeholder engagement in the management of the river. Results point to the need for environmental managers to ensure that consultation is not limited to the most actively engaged sectors of the community, as their responses may not be representative of other groups.     

The value of culturedness: Bosnian and Hungarian migrants' experiences of belonging in Australia

In this paper we investigate how the values of respect and dignity inform the ways migrants from Bosnia and Herzegovina and Hungary in Australia locate themselves in relation to local, national and transnational identities. Drawing upon ethnographic insights, we discuss how the concept of culturedness is implicated in these migrant claims for dignified belonging. Determinants of culturedness are informed by influential narratives of ‘East versus West’, ‘Balkan versus Europe’, the ‘New World (Australia) versus the Old World’ (Europe). Implicit within these discourses are attempts to demarcate civilisational distinctions. We argue that dignified belonging for people from these migrant communities in Australia involves negotiating identification with culturedness and positioning themselves on the right side of the civilised/primitive divide. This collaboration draws attention to the significance of ontological security through respect within the shared discourses and experiences of belonging for members of these two migrant groups in Australia.     

Benthic diatom assemblages and their response to human stress in small-sized volcanic-siliceous streams of central Italy (Mediterranean eco-region)

The river typology ‘volcanic rivers’ represents a unique typology in the Mediterranean eco-region in Europe but its type-specific diatom assemblages are still poorly investigated. The main aims of this study were (i) to analyse the diatom diversity of this river type, (ii) to investigate the relationships between diatom diversity and environmental variables and (iii) to identify the characterizing diatom community structure of different environmental groups. To this end, we selected 13 streams located in central Italy, belonging to a single river type and covering the whole quality range from human impacted sites to those in ‘reference conditions’. Most frequent and abundant diatom species found were Cocconeis placentula var. lineata, Planothidium lanceolatum, Rhoicosphenia abbreviata and Amphora pediculus. Species richness in reference and less impacted sites was not higher than in intermediate and heavily degraded ones, but non-metric multidimensional scaling (N-MDS) analysis revealed a substantial difference among their diatom community structure. The indicator species analysis defined the characteristic species of three environmental groups identified by N-MDS. The findings of this study represent a contribution to the knowledge on diatom communities of Mediterranean volcanic-siliceous rivers and provide information for a data-driven implementation of the Water Framework Directive in Italy for this specific river typology.     

Macrophyte community structure and species occurrence in relation to environmental determinants in the ephemeral aquatic habitats of Gavdos,Greece

The aims of this study were to explore the environmental factors that determine the distribution of plant communities in temporary rock pools and provide a quantitative analysis of vegetation–environment relationships for five study sites on the island of Gavdos, southwest of Crete, Greece. Data from 99 rock pools were collected and analysed using Two-Way Indicator Species Analysis (TWINSPAN), Detrended Correspondence Analysis (DCA) and Canonical Correspondence Analysis (CCA) to identify the principal communities and environmental gradients that are linked to community distribution. A total of 46 species belonging to 21 families were recorded within the study area. The dominant families were Labiatae, Gramineae and Compositae while therophytes and chamaephytes were the most frequent life forms. The samples were classified into six community types using TWINSPAN, which were also corroborated by CCA analysis. The principal gradients for vegetation distribution, identified by CCA, were associated with water storage and water retention ability, as expressed by pool perimeter and water depth. Generalised Additive Models (GAMs) were employed to identify responses of four dominant rock pool species to water depth. The resulting species response curves showed niche differentiation in the cases of Callitriche pulchra and Tillaea vaillantii and revealed competition between Zannichellia pedunculata and Chara vulgaris. The use of classification in combination with ordination techniques resulted in a good discrimination between plant communities. Generalised Additive Models are a powerful tool in investigating species response curves to environmental gradients. The methodology adopted can be employed for improving baseline information on plant community ecology and distribution in Mediterranean ephemeral pools. Handling editor: S. M. Thomaz     

Water table and species identity outweigh carbon and nitrogen availability in a softwater plant community

Performance of aquatic macrophytes is driven by many environmental factors, and a major challenge is to understand how aquatic macrophyte communities are structured in various environments. In softwater lakes in Western Europe, hydrological state (submersed/emersed), carbon dioxide and ammonium levels and species interactions are considered as driving forces in structuring amphibious plant communities. In this study we aimed at evaluating the relative importance of these factors for four species in a competitive neighbourhood. Softwater lake habitat was simulated during one growing season in laboratory conditions, mimicking water level fluctuation, photoperiod and temperature. Artificial communities consisted of small populations of four softwater macrophyte species: Luronium natans, Baldellia ranunculoides ssp. repens, Eleocharis multicaulis and Hydrocotyle vulgaris. These communities were subjected to two levels of carbon dioxide and ammonium. Additionally, monocultures of Baldellia and Eleocharis were grown at a higher nutrient level combination in order to measure their competitive response in a community. Time (hydrological state) and species identity turned out to be the only consistently significant factors determining community composition. Plant performance was clearly species-dependent, while carbon dioxide and ammonium did not have major effects. The competitive response was significant in both Eleocharis and Baldellia. Competition intensity was highest in the emersed state. Carbon dioxide had a supplementary effect on the within-species performance in Luronium, Baldellia and Eleocharis, with high carbon dioxide level mainly resulting in more flowers and more stolons. Community outcomes and competitive responses in aquatic macrophytes appear difficult to predict, because of mixed life strategies and morphological and functional plasticity. We conclude that hydrological state was the only important environmental factor. The identity of the species that were present—implying species interactions—largely determined community outcome.     

Biodiversity change under adaptive community dynamics

Compositional change is a ubiquitous response of ecological communities to environmental drivers of global change, but is often regarded as evidence of declining “biotic integrity” relative to historical baselines. Adaptive compositional change, however, is a foundational idea in evolutionary biology, whereby changes in gene frequencies within species boost population-level fitness, allowing populations to persist as the environment changes. Here, we present an analogous idea for ecological communities based on core concepts of fitness and selection. Changes in community composition (i.e., frequencies of genetic differences among species) in response to environmental change should normally increase the average fitnessof community members. We refer to compositional changes that improve the functional match, or “fit,” between organisms' traits and their environment as adaptive community dynamics. Environmental change (e.g., land-use change) commonly reduces the fit between antecedent communities and new environments. Subsequent change in community composition in response to environmental changes, however, should normally increase community-level fit, as the success of at least some constituent species increases. We argue that adaptive community dynamics are likely to improve or maintain ecosystem function (e.g., by maintaining productivity). Adaptive community responses may simultaneously produce some changes that are considered societally desirable (e.g., increased carbon storage) and others that are undesirable (e.g., declines of certain species), just as evolutionary responses within species may be deemed desirable (e.g., evolutionary rescue of an endangered species) or undesirable (e.g., enhanced virulence of an agricultural pest). When assessing possible management interventions, it is important to distinguish between drivers of environmental change (e.g., undesired climate warming) and adaptive community responses, which may generate some desirable outcomes. Efforts to facilitate, accept, or resist ecological change require separate consideration of drivers and responses, and may highlight the need to reconsider preferences for historical baseline communities over communities that are better adapted to the new conditions.     

Zooplankton community structure along a pollution gradient at fine geographical scales in river ecosystems: The importance of species sorting over dispersal

The release of anthropogenic pollution into freshwater ecosystems has largely transformed biodiversity and its geographical distribution patterns globally. However, for many communities including ecologically crucial ones such as zooplankton, it is largely unknown how different communities respond to environmental pollution. Collectively, dispersal and species sorting are two competing processes in determining the structure and geographical distribution of zooplankton communities in running water ecosystems such as rivers. At fine geographical scales, dispersal is usually considered as the dominant factor; however, the relative role of species sorting has not been evaluated well, mainly because significant environmental gradients rarely exist along continuously flowing rivers. The Chaobai River in northern China represents a rare system, where a significant environmental gradient exists at fine scales. Here, we employed high‐throughput sequencing to characterize complex zooplankton communities collected from the Chaobai River, and tested the relative roles of dispersal and species sorting in determining zooplankton community structure along the pollution gradient. Our results showed distinct patterns of zooplankton communities along the environmental gradient, and chemical pollutant‐related factors such as total phosphorus and chlorophyll‐a were identified as the major drivers for the observed patterns. Further partial redundancy analyses showed that species sorting overrode the effect of dispersal to shape local zooplankton community structure. Thus, our results reject the dispersal hypothesis and support the concept that species sorting caused by local pollution can largely determine the zooplankton community structure when significant environmental gradients exist at fine geographical scales in highly polluted running water ecosystems.     

Use of low-budget monitoring of macroalgae to implement the European Water Framework Directive

Benthic macroalgal communities constitute one of the ecological quality elements needed to implement the Water Framework Directive (2000/60/EC), the legislation targetted at sustainable management of the European aquatic environment. As the Directive foresees the establishment of Ecological Status Class boundaries and Reference Conditions in coastal waters, a study was conducted on the Attica coast of Greece to identify the best method to use macroalgal community data for evaluating ecological quality and at the same time keep the program within a low budget. Six seasonal quantitative and qualitative samples were taken from the upper infralittoral macroalgal communities on the Attica coast of Greece on six occasions between summer 1998 and spring 2002; these sites, which reflect a gradient of anthropogenic perturbation, were used on each occasion. A list of 60 macroalgal taxa was prepared, the cover value of each taxon was measured and the structure of the vegetation was described. The use of four different indices (Shannon-Weaver index, Pielou evenness, Multi-Dimensional Scaling plot of Bray-Curtis similarity, Ecological Evaluation index-EEI) were compared. The multidimensional scaling of Bray-Curtis similarity and the EEI were better at indicating the perturbation pattern of the study area. However, only the EEI succeeded in distinguishing four quality classes (‘low’ to ‘high’). By using EEI, a spatial scale-weighted evaluation of ecological quality was also performed. This revised version was published online in August 2006 with corrections to the Cover Date.     

Diatoms: unicellular surrogates for macroalgal community structure in streams?

As wholesale biodiversity assessment is often impractical, the use of surrogates that reflect the assemblage structure and diversity of other taxa has attracted increased attention. We sampled 47 boreal streams for diatoms and macroalgae and examined their assemblage patterns along major environmental gradients. Our main intention was to examine whether diatoms might be useful surrogates for macroalgae in boreal streams. We also assessed whether taxon richness and community composition provided similar insights into the patterns of cross-taxon concordance. According to canonical correspondence analysis, diatom distribution was most strongly related to water pH, conductivity, latitude and longitude, and macroalgal distribution to water pH and iron content, latitude and bed instability. In Mantel’s test, diatoms and macroalgae showed significant cross-taxon concordance. However, there was no significant correlation between taxon richness of the two algal groups, likely reflecting their differing responses to environmental variables. We found evidence that although diatoms and macroalgae are partly controlled by different environmental factors, they are segregated rather similarly along latitude and a few environmental gradients such as water pH and iron content. We conclude that, at least at broad geographical extents and in small streams, diatoms reflect the structure of the macroalgal community and are therefore useful surrogates for cost-effective biomonitoring of algal communities in streams.     

Monitoring of marine benthic communities and taxonomic resolution: an approach through diverse habitats and substrates along the Southern Iberian coastline

Studies conducted along the southern Iberian coastline validate macrobenthic community analyses at taxonomic levels higher than that of species. Twelve studies on littoral benthic communities, carried out by the same research team, were selected spanning both a variety of sampling strategies (spatial, temporal, spatio-temporal) and substrate/habitat types (sediment, rock, algae). In order to establish differences between the results obtained at the taxonomic levels of species, family and order, similarities among stations were calculated using Spearman’s coefficient for ranges. A subset of three studies was selected to investigate possible differences in ‘best-explaining’ environmental variables with taxonomic level. The environmental variables selected at species level were the same as those found at levels of family and order. It is concluded that studies at the different levels of taxonomic resolution (species, family, order) lead to similar results both with regard to relative community distributions and the environmental variables associated with these. The importance of this result for monitoring similar benthic communities is discussed.     

Use of Phytoplankton Assemblages for Monitoring Ecological Status of Lakes within the Water Framework Directive: The Assemblage Index

The ingress of an urban stream carrying high contaminant loads into a large coastal river originates a “dispersion plume” subject to the hydrological conditions of a river affected by tidal influences. In the present study 21 sites within the “contaminant plume” of the Riachuelo River in the Rio de la Plata were analysed on the same date in order to evaluate the biological status of the area which receives this strong environmental impact, and to examine its effect on the zoobenthic communities. Diversity, taxonomic richness, abundance, physico-chemical parameters and a biological index (IMRP) were used to assess the responses of the macroinvertebrates. The correlation between exposure and effect was calculated by means of the exposure index (IEX). The relationship between the macroinvertebrate communities and environmental variables was examined using CCA analysis. Conductivity, Cr, BOD and COD, were most strongly correlated with Axis 1, suggesting the existence of a gradient of environmental degradation. The most severely contaminated sites (IMRP= 1.1–2.5; IEX = 100–78%) were all characterized by a reduced community dominated by Nematoda and Oligochaeta. A moderate response was observed between 1400 and 1600 m from the coast (IMRP = 2.6–3.9; IEX = 36%) largely owing to the physico-chemical characteristics of the recipient river which contributed to moderating the effect of the anthopogenic perturbation. For statistical validation, this area was compared with historical physico-chemical and biological data, where OD and COD showed the same tendency throughout the 10-year period.     

Advancing Science for Water Resources Management

Despite the major advances in science to underpin water resources and river management that have taken place over the past two decades, a need remains to establish a unifying framework that will lead to new, appropriate tools for water resources management. In Europe, this need has been highlighted by the promotion of the Water Framework Directive. From a scientific perspective, key questions focus on the ecological significance of flow variability over a range of timescales and the linkage between flow variability, habitat variability and biological population responses, and the biological interactions among these populations. Creation of scientifically sound tools requires development of knowledge at the level of first principles to realize sustainable developments within the context of adaptive management. Similitude analyses provide a mechanism for upscaling from fine ‘research’ scales to the coarser scales of water resource managers. Lack of appropriate data is the major obstacle to the development of these tools, especially those concerned with large rivers.     

Toolbox Approaches Using Molecular Markers and 16S rRNA Gene Amplicon Data Sets for Identification of Fecal Pollution in Surface Water

In this study, host-associated molecular markers and bacterial 16S rRNA gene community analysis using high-throughput sequencing were used to identify the sources of fecal pollution in environmental waters in Brisbane, Australia. A total of 92 fecal and composite wastewater samples were collected from different host groups (cat, cattle, dog, horse, human, and kangaroo), and 18 water samples were collected from six sites (BR1 to BR6) along the Brisbane River in Queensland, Australia. Bacterial communities in the fecal, wastewater, and river water samples were sequenced. Water samples were also tested for the presence of bird-associated (GFD), cattle-associated (CowM3), horse-associated, and human-associated (HF183) molecular markers, to provide multiple lines of evidence regarding the possible presence of fecal pollution associated with specific hosts. Among the 18 water samples tested, 83%, 33%, 17%, and 17% were real-time PCR positive for the GFD, HF183, CowM3, and horse markers, respectively. Among the potential sources of fecal pollution in water samples from the river, DNA sequencing tended to show relatively small contributions from wastewater treatment plants (up to 13% of sequence reads). Contributions from other animal sources were rarely detected and were very small (<3% of sequence reads). Source contributions determined via sequence analysis versus detection of molecular markers showed variable agreement. A lack of relationships among fecal indicator bacteria, host-associated molecular markers, and 16S rRNA gene community analysis data was also observed. Nonetheless, we show that bacterial community and host-associated molecular marker analyses can be combined to identify potential sources of fecal pollution in an urban river. This study is a proof of concept, and based on the results, we recommend using bacterial community analysis (where possible) along with PCR detection or quantification of host-associated molecular markers to provide information on the sources of fecal pollution in waterways.