Climate change and frog calls: long-term correlations along a tropical altitudinal gradient

Temperature affects nearly all biological processes, including acoustic signal production and reception. Here, we report on advertisement calls of the Puerto Rican coqui frog (Eleutherodactylus coqui) that were recorded along an altitudinal gradient and compared these with similar recordings along the same altitudinal gradient obtained 23 years earlier. We found that over this period, at any given elevation, calls exhibited both significant increases in pitch and shortening of their duration. All of the observed differences are consistent with a shift to higher elevations for the population, a well-known strategy for adapting to a rise in ambient temperature. Using independent temperature data over the same time period, we confirm a significant increase in temperature, the magnitude of which closely predicts the observed changes in the frogs’ calls. Physiological responses to long-term temperature rises include reduction in individual body size and concomitantly, population biomass. These can have potentially dire consequences, as coqui frogs form an integral component of the food web in the Puerto Rican rainforest.     

Proteomics and Beyond: a report on the 3rd Annual Spring Workshop of the HUPO-PSI 21-23 April 2006, San Francisco, CA, USA

The theme of the third annual Spring workshop of the HUPO-PSI was "proteomics and beyond" and its underlying goal was to reach beyond the boundaries of the proteomics community to interact with groups working on the similar issues of developing interchange standards and minimal reporting requirements. Significant developments in many of the HUPO-PSI XML interchange formats, minimal reporting requirements and accompanying controlled vocabularies were reported, with many of these now feeding into the broader efforts of the Functional Genomics Experiment (FuGE) data model and Functional Genomics Ontology (FuGO) ontologies.     

Zonal transition of evergreen,deciduous, and coniferous forests along the altitudinal gradient on a humid subtropical mountain,Mt. Emei,Sichuan, China

Altitudinal zonation of evergreen, deciduous and coniferous forests on Mt. Emei (3099 m asl, 29°34.5' N, 103°21.5' E), Sichuan, China was studied to understand the transition of vegetation zonation from tropical to temperate mountains in humid Asia. On the basis of quantitative data on floristic composition and community structure sampled at ten plots selected in different altitudes on the eastern slope of the mountain, forest zonation and the inter-relationships among different life-forms of trees in each zonal forest community were studied quantitatively. Three forest zones were identified physiognomically along the altitudinal gradient, viz. (i) the evergreen broad-leaved forest zone (660–1500 m asl), (ii) the mixed forest zone (1500–2500 m asl), and (iii) the coniferous forest zone (2500–3099 m asl). Great compositional changes were observed along elevation, and the zonal forest communities were characterized by their dominants and floristic composition. Maximum tree height decreased from 33 m at lower middle altitude (965 m asl) to 13 m near the summit (2945 m asl). There was no apparent deciduous forest zone along the altitudinal gradient, but true mixed forests of three life-forms (evergreen, deciduous, and coniferous) were formed around 2000–2500 m asl. Patches of deciduous forest were found in a lower part of the mixed forest zone, particularly on scree slopes, between 1450 m and 1900 m asl. These patches were dominated by the Tertiary relic deciduous trees, such as Davidia involucrata, Tetracentron sinense, and Cercidiphyllum japonicum var. sinense. High species diversity in the mixed forest zone resulted from the overlapping of different life-forms at middle altitudes, which is partly due to wider variety of temperature-altitude correlations. A comparison of the altitudinal zonation with the other east Asian mountain vegetation clarified that Mt. Emei is located exactly at the ecotone between tropical and temperate zonation types in eastern Asia.     

Environmental change and rain forests on the Sunda shelf of Southeast Asia: drought, fire and the biological cooling of biodiversity hotspots

Environmental change during the Quaternary period has caused changes in the composition and structure of vegetation on the Sunda shelf of Southeast Asia. Climatic conditions drier than the present, particularly during the peak of the last ice age, led to a reduction in the extent of rain forests. Most recently, there has been a close association between drought and the occurrence of major, rain forest fires. Although many rain forest trees show adaptations to periodic drought, this is not the case for frequent or intense fires. Over evolutionary time-scales, major fires may thus have been largely confined to driver vegetation types, such as monsoon and deciduous forests, and only infrequently penetrated rain forest areas. Continental-scale distribution patterns for rain forest species reveal a number of biodiversity hotspots that are consistent for a broad range of taxonomically unrelated taxa. These biodiversity hotspots account for a relatively small part of the total extent of rain forest; they may also represent ecologically relatively stable areas. This paper discusses the location and extent of biodiversity hotspots on the Sunda shelf within the context of past and present environmental change. It finds that whatever the history of biodiversity hotspots, they are increasingly threatened by contemporary environmental change, notably a trend towards increasingly frequent and intense fires. The paper concludes that the trend is likely to continue, without major changes in those activities that degrade and precondition to fire remaining areas of rain forest.     

Rapid root closure after fire limits fine root responses to elevated atmospheric CO2 in a scrub oak ecosystem in central Florida, USA

Elevated atmospheric carbon dioxide (CO₂) often stimulates the growth of fine roots, yet there are few reports of responses of intact root systems to long‐term CO₂ exposure. We investigated the effects of elevated CO₂ on fine root growth using open top chambers in a scrub oak ecosystem at Kennedy Space Center, Florida for more than 7 years. CO₂ enrichment began immediately after a controlled burn, which simulated the natural disturbance that occurs in this system every 10–15 years. We hypothesized that (1) root abundance would increase in both treatments as the system recovered from fire; (2) elevated CO₂ would stimulate root growth; and (3) elevated CO₂ would alter root distribution. Minirhizotron tubes were used to measure fine root length density (mm cm^?2) every three months. During the first 2 years after fire recovery, fine root abundance increased in all treatments and elevated CO₂ significantly enhanced root abundance, causing a maximum stimulation of 181% after 20 months. The CO₂ stimulation was initially more pronounced in the top 10 cm and 38–49 cm below the soil surface. However, these responses completely disappeared during the third year of experimental treatment: elevated CO₂ had no effect on root abundance or on the depth distribution of fine roots during years 3–7. The results suggest that, within a few years following fire, fine roots in this scrub oak ecosystem reach closure, defined here as a dynamic equilibrium between production and mortality. These results further suggest that elevated CO₂ hastens root closure but does not affect maximum root abundance. Limitation of fine root growth by belowground resources – particularly nutrients in this nutrient‐poor soil – may explain the transient response to elevated CO₂.     

Cumulative effects of land use,altered fire regime and climate change on persistence of Ceanothus verrucosus,a rare,fire‐dependent plant species

Mediterranean ecosystems are among the highest in species richness and endemism globally and are also among the most sensitive to climate and land‐use change. Fire is an important driver of ecosystem processes in these systems; however, fire regimes have been substantially changed by human activities. Climate change is predicted to further alter fire regimes and species distributions, leading to habitat loss and threatening biodiversity. It is currently unknown what the population‐level effects of these landscape‐level changes will be. We linked a spatially explicit stochastic population model to dynamic bioclimate envelopes to investigate the effects of climate change, habitat loss and fragm entation and altered fire regime on population abundances of a long‐lived obligate seeding shrub, Ceanothus verrucosus, a rare endemic species of southern California. We tested a range of fire return intervals under the present and two future climate scenarios. We also assessed the impact of potential anthropogenic land‐use change by excluding land identified as developable by local governments. We found that the 35–50 year fire return interval resulted in the highest population abundances. Expected minimum population abundance (EMA) declined gradually as fire return interval increased, but declined dramatically for shorter fire intervals. Simulated future development resulted in a 33% decline in EMA, but relatively stable population trajectories over the time frame modeled. Relative changes in EMA for alternative fire intervals were similar for all climate and habitat loss scenarios, except under the more severe climate scenario which resulted in a change in the relative ranking of the fire scenarios. Our results show climate change to be the most serious threat facing obligate seeding shrubs embedded in urban landscapes, resulting in population decline and increased local extirpation, and that likely interactions with other threats increase risks to these species. Taking account of parameter uncertainty did not alter our conclusions.     

Temperature gradient chambers for research on global environment change. II. A twin-wall tunnel system for low-stature, field-grown crops using a split heat pump

A temperature gradient chamber (TGC) is described which enables elevated CO₂ concentrations and a dynamic temperature gradient to be imposed on field crops throughout their life cycle under standard husbandry. Air is circulated through two double-walled polyethylene-covered tunnels connected to a split heat pump system to give a near-linear temperature gradient along each tunnel. Solar energy gain along each tunnel and exchange with outer tunnel air flow contribute to the temperature gradient and also produce diurnal and seasonal temperature fluctuations corresponding to ambient conditions. Mean temperature gradients of between 3 and 5°C have been recorded throughout the growing seasons of crops of lettuce, carrot, cauliflower and winter wheat. Elevated or present CO₂ concentrations are maintained in each of two pairs of tunnels throughout the cropping season using pure CO₂ injected through motorized needle valves. This system can realistically simulate aspects of the effects of projected future environmental change on crop growth, development and yield, and in particular tin-possible interaction of the effects of increased CO₂ and temperature.     

Observations of responses to re‐introducing fire in a Basalt Plains grassland after the removal of grazing: Implications for restoration

Natural grasslands in southern Australia commonly exist in altered states. One widespread altered state is grassland pasture dominated by cool‐season (C3) native grasses maintained by ongoing grazing. This study explores the consequences of removing grazing and introducing fire as a conservation management tool for such a site. We examined the abundance of two native and three exotic species, across a mosaic of fire regimes that occurred over a three‐year period: unburnt, summer wild‐fire (>2 years previous), autumn management fire (<1 year previously) and burnt in both fires. Given that one aim of conservation management is to increase native species at the expense of exotics, the impacts of the fires were largely positive. Native grasses were at higher cover levels in the fire‐managed vegetation than in the unburnt vegetation. Of the three exotic species, one was consistently at lower density in the burnt plots compared to the unburnt plots, while the others were lower only in those plots burnt in summer. The results show that the response of a species varies significantly between different fire events, and that the effects of one fire can persist through subsequent fires. Importantly, some of the effects were large, with changes in the density of plants of over 100‐fold. Fire is potentially a cost‐effective tool to assist the ecological restoration of retired grassland pastures at large scales.     

Complex effects of climate change: population fluctuations in a tropical rodent are associated with the southern oscillation index and regional fire extent,but not directly with local rainfall

We report on the population response of a species of rodent, Necromys lasiurus, to southern oscillation index (SOI) and extent of regional fire in an Amazonian savanna. Information on temporal variation in local abundance of N. lasiurus in a 4.0 ha savanna plot was obtained from 1985 to 1989, from 1997 to 1998 and 2000–2006, giving data on 14 of the 22 years. Throughout this period, rodent density declined by 90%. Densities were positively associated with SOI and the extent of fire in the region. Rainfall was related to SOI and negatively influenced the extent of fire. However, the amount of rain had no measurable direct effect on rat densities. Thus, small changes in temperature, and consequently fire probability and intensity, may have drastic consequences on the biota of Amazonian savannas, especially in El Niño periods.     

Assessing Toxicant Effects in a Complex Estuary: A Case Study of Effects of Silver on Reproduction in the Bivalve,Potamocorbula amurensis,in San Francisco Bay

Contaminant exposures in natural systems can be highly variable. This variability is superimposed upon cyclic variability in biological processes. Together, these factors can confound determination of contaminant effects. Long term, multidisciplined studies with high frequency sampling can be effective in overcoming such obstacles. While studying trace metal contamination in the tissues of the clam, Potamocorbula amurensis, in the northern reach of San Francisco Bay, an episode of high Ag concentrations was identified (maximum of 5.5?µg g^?1) at two mid-estuary sites. High concentrations were not seen in clams up-estuary (maximum of 1.92?µg g^?1) from these sites and were reduced down-estuary (maximum of 2.67?µg g^?1). Silver is not common naturally in the environment, so its elevated presence is usually indicative of anthropogenic influences such as municipal and industrial discharge. Monthly sampling of reproductive status of clams characterized the reproductive cycle and differences in the patterns of reproductive activity that corresponded to changes in Ag tissue concentrations. The proportion of reproductive clams was less than 60% during periods when tissue concentrations were high (generally >2?µg g^?1). When tissue concentrations of Ag decreased (≤1?µg g^?1), the proportion of reproductive clams was 80 to 100%. A comparison between the annual proportion of reproductive clams and annual Ag tissue concentrations showed a significant negative correlation. No other measured environmental variables were correlated with reproductive impairment. The weight-of-evidence approach strongly supports a cause and effect relationship between Ag contamination and reduced reproductive activity in P. amurensis.     

Impacts of tree species diversity on litter decomposition in northern temperate forests of Wisconsin, USA: a multi-site experiment along a latitudinal gradient

Over the past decade an increasing amount of research has sought to understand how the diversity of species in an ecosystem can influence fluxes of biologically important materials, such as the decomposition of organic matter and recycling of nutrients. Generalities among studies have remained elusive, perhaps because experimental manipulations have been performed at relatively small spatial scales where site-specific variation generates patterns that appear idiosyncratic. One approach for seeking generality is to perform parallel experiments at different sites using an identical species pool. Here we report results from a study where we manipulated the diversity of leaf litter from the same six dominant tree species in the litter layer of three forested ecosystems. These ecosystems spanned a 300 km latitudinal transect in Wisconsin, USA, and were characterized by a large gradient in temperature and moisture, and thus, rates of decomposition. After allowing combinations of one, two, four, and six species of leaf litter to decompose for 1 year, we found that increasing leaf litter richness led to slower rates of decomposition and higher fractions of nitrogen lost from litter. Across all sites, climate and initial litter chemistry explained more of the variation in decomposition rates than did litter richness. Effects of leaf litter diversity were non-additive, meaning they were greater than expected from the impacts of individual species, and appeared to be strongly influenced by the presence/absence of just 1–2 species (Tilia americana and Acer saccharum). The rate of decomposition of these two species was highly site-specific, which led to strong negative effects of litter richness only being observed at the southernmost sites where T. americana and A. saccharum decomposed more quickly. In contrast, litter diversity increased nitrogen loss at the northernmost sites where decomposition of T. americana was notably slowed. Our study shows that species diversity affected at least one of the two litter processes at each site along this 300-km gradient, but the exact nature of these effects were spatially variable because the performance of individual species changed across the heterogeneous landscape.     

Subalpine vegetation pattern three decades after stand‐replacing fire: effects of landscape context and topography on plant community composition,tree regeneration,and diversity

Objective: Our purpose was to characterize vegetation compositional patterns, tree regeneration, and plant diversity, and their relationships to landscape context, topography, and light availability across the margins of four stand‐replacing subalpine burns. Location: Four 1977 to 1978 burns east of the Continental Divide in Colorado: the Ouzel burn, a burn near Kenosha Pass, the Badger Mountain burn, and the Maes Creek burn. Methods: Vegetation and environmental factors were sampled in 200 0.01‐ha plots on transects crossing burn edges, and stratified by elevation. We utilized dissimilarity indices, mixed‐effects models, and randomization tests to assess relationships between vegetation and environment. Results: Three decades after wildfire, plant communities exhibited pronounced compositional shifts across burn edges. Tree regeneration decreased with increasing elevation and distance into burn interiors; concomitant increases in forbs and graminoids were linked to greater light availability. Richness was roughly doubled in high‐severity burn interiors due to the persistence of a suite of native species occurring primarily in this habitat. Richness rose with distance into burns, but declined with increasing elevation. Only three of 188 plant species were non‐native; these were widespread, naturalized species that comprised <1% total cover. Conclusions: These subalpine wildfires generated considerable, persistent increases in plant species richness at local and landscape scales, and a diversity of plant communities. The findings suggest that fire suppression in such systems must lead to reduced diversity. Concerns about post‐fire invasion by exotic plants appear unwarranted in high‐elevation wilderness settings.     

Bootlegging on a desert mountain: The political ecology of Agave (Agave spp.) demographic change in the Sonora river valley,Sonora, Mexico

Recent studies suggest that wild agave (Agavespp.) plants in Sonora, Mexico, are being over-harvested by mescal makers on communal lands. Using the conceptual framework of regional political ecology (Blaikie and Brookfield, 1987), I discuss the ecological processes of agave depletion, and investigate the social, economic, and political contexts in which unsustainable harvest practices arise. Whereas all the mescal makers have knowledge of sustainable harvest methods, population growth, expansion of agriculture onto ecologically marginal lands, and increasing dependence on wild harvested products from communal lands created the socioeconomic context for increased demand for mescal income. The ideology of household autonomy, and the belief that the village has no right to internally regulate use of the commons, created the political context for rapid, unsustainable harvesting—a tragedy of the commons. However, recent cultural changes have caused a reversal of this trend, and some wild agave populations may be recovering.     

Assessing the effects of land-use change on plant traits, communities and ecosystem functioning in grasslands: a standardized methodology and lessons from an application to 11 European sites

BACKGROUND AND AIMS: A standardized methodology to assess the impacts of land-use changes on vegetation and ecosystem functioning is presented. It assumes that species traits are central to these impacts, and is designed to be applicable in different historical, climatic contexts and local settings. Preliminary results are presented to show its applicability. METHODS: Eleven sites, representative of various types of land-use changes occurring in marginal agro-ecosystems across Europe and Israel, were selected. Climatic data were obtained at the site level; soil data, disturbance and nutrition indices were described at the plot level within sites. Sixteen traits describing plant stature, leaf characteristics and reproductive phase were recorded on the most abundant species of each treatment. These data were combined with species abundance to calculate trait values weighed by the abundance of species in the communities. The ecosystem properties selected were components of above-ground net primary productivity and decomposition of litter. KEY RESULTS: The wide variety of land-use systems that characterize marginal landscapes across Europe was reflected by the different disturbance indices, and were also reflected in soil and/or nutrient availability gradients. The trait toolkit allowed us to describe adequately the functional response of vegetation to land-use changes, but we suggest that some traits (vegetative plant height, stem dry matter content) should be omitted in studies involving mainly herbaceous species. Using the example of the relationship between leaf dry matter content and above-ground dead material, we demonstrate how the data collected may be used to analyse direct effects of climate and land use on ecosystem properties vs. indirect effects via changes in plant traits. CONCLUSIONS: This work shows the applicability of a set of protocols that can be widely applied to assess the impacts of global change drivers on species, communities and ecosystems.