Structural heterogeneity in waxy-rice starch

Alpha-amylase of B. amyloliquefaciens was used for the structural characterization of the amylopectin from waxy-rice starch. Fractions of -dextrins with a degree of polymerization (d.p.) <5000 were isolated from amylopectin hydrolysates after 1 and 3 h. φ,β-Limit dextrins were prepared by successive phosphorolysis and beta-amylolysis of the fractions and these were analysed by a second alpha-amylolysis. Based on the hydrolysis pattern, the limit dextrins were divided into two major groups, A and B, which possessed units of clusters of d.p. 100–200 and 90–130, respectively. An extensive alpha-amylolysis resulted in characteristic distributions of dextrins with d.p. <80 which represented branched building blocks. Type A dextrins possessed more larger building blocks with d.p. 40, but less intermediate and small blocks, than type B. The φ,β-limit dextrin of the original amylopectin had a distinct distribution enriched in small building blocks. A model is proposed in which the two types of dextrins originate from regular and less regular structural domains of the amylopectin fraction within the starch granules.     

Linkage mapping of starch branching enzyme III in rice (Oryza sativa L.) and prediction of location of orthologous genes in other grasses

 The chromosomal position of Starch Branching Enzyme III (SBEIII) was determined via linkage to RFLP markers on an existing molecular map of rice (Oryza sativa L.). A cDNA of 890 bp was generated using specific PCR primers designed from available SBEIII sequence data and used as a probe in Southern analysis. The SBEIII cDNA hybridized to multiple restriction fragments, but these fragments mapped to a single locus on rice chromosome 2, flanked by CDO718 and RG157. The detection of a multiple-copy hybridization pattern suggested the possibility of a tandemly duplicated gene at this locus. The map location of orthologous SBE genes in maize, wheat, and oat were predicted based on previously published genetic studies and comparative maps of the grass family. Received : 5 August 1996 / Accepted : 13 September 1996     

Molecular weight distribution and functional group profiles of TEMPO-oxidized lyocell fibers

The effects of TEMPO-mediated oxidation, performed with NaClO, a catalytic amount of NaBr, and 2,2′,6,6′-tetramethylpiperidine-1-oxy radical (TEMPO), were studied on lyocell fibers by means of GPC using multiple detection and group-selective fluorescence labeling according to the CCOA and FDAM methodology. The applied method determines functional group content as a sum parameter, as well as functional group profiles in relation to the molecular weight of the cellulose fibers. Both the CHO and COOH profiles, as well as molecular weight alterations, were analyzed. A significant decrease in the average molecular weight was obtained during the first hour of TEMPO-mediated oxidation, but prolonged oxidation time resulted in no strong additional chain scission. Significant amounts of COOH groups were introduced in the high molecular weight fractions by the oxidation with higher concentrations of NaClO (2.42–9.67 mmol NaClO/g fiber) after modification times of 1 h or longer.     

Development of SNP-based CAPS and dCAPS markers in eight different genes involved in starch biosynthesis in rice

Single nucleotide polymorphisms (SNPs), which are inexhaustible, highly stable, and simply detectable sequence polymorphisms, can lead to phenotypic variations by affecting protein composition changes. Here, we report development of 25 new cleaved amplified polymorphic sequence or derived cleaved amplified polymorphic sequence markers that have discrete band sizes in relation to the SNP genotypes in eight putative gene regions. The average frequency of DNA polymorphisms was 1 per 175 bp (SNPs, 1 per 217 bp; In/dels, 1 per 906 bp). In primary statistical analysis of each marker on 55 diverse rice accessions, including different ecotypes, the mean value of the major allele frequency was 0.658 (0.509–0.927). The average polymorphism information content was 0.326 (0.126–0.375). The mean value of the inbreeding coefficient (f) was 0.950 and was positive (heterozygote deficiency) at all loci, corresponding to the inbreeding system in rice. In cluster analysis, all rice accessions clustered mainly into three groups according to the ecotypes. The association analysis showed that the SNP of Granule-bound starch synthase I and ADP-glucose pyrophosphorylase small subunit (ADPase-S) genes were highly associated with apparent amylose content variation than the others. These new SNP markers may be useful in genotyping rice germplasm, in marker-assisted selection for improving starch quality and content, and in linkage as well as association studies. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Effect of submergence on translocation,starch content and amylolytic activity in deep-water rice

Submergence induces rapid internodal elongation in deep-water rice (Oryza sativa L. cv. Habiganj Aman II). We investigated the metabolic activities which help to support such fast growth. Three days of submergence in water under continuous light led to the mobilization of 65% of the starch from those regions of rice internodes which had been formed prior to submergence. Disappearance of starch was accompanied by a 70-fold enhancement of amylolytic activity. Similar increases in amylolytic activity were detected in response to ethylene and gibberellic acid. Submergence also caused a 26-fold increase in the translocation of newly synthesized photosynthetic assimilates from the leaves to the internodes and younger regions of the culms. These physiological processes are likely to provide the metabolic energy required for internodal elongation in response to submergence.Abbreviation GA₃ gibberellic acid     

籼稻A232及其RILs对三化螟产卵的抗性

【目的】明确不同水稻基因型对三化螟Tryporyza incertulas(Walker)产卵的抗性差异,为抗螟材料的育种利用提供依据。【方法】以5个对照品种及10个冈46B×A232的RILs为材料,在海南自然条件下通过灯诱三化螟雌蛾产卵,比较不同基因型间落卵量的差异。【结果】三化螟雌蛾卵块在水稻基因型间呈聚集分布,A232、TTP、F77及RILs C22-230、C22-174、C22-113、C22-133的聚集均数(λ)值<2,对雌蛾产卵具有一定的驱避性。基因型间的叶片卵块指数及分蘖卵块指数均达显著或极显著差异,冈优188的叶片及分蘖卵块指数分别是A232的6.1倍及5.7倍。C22-99的叶片及分蘖卵块指数是C22-113的2.7倍及3.3倍。A232、TTP及C22-113对雌蛾产卵及幼虫取食均具有一定抗性。聚类分析将15个供试材料分为倾抗虫亲本A232和倾感虫亲本冈46B两大类。【结论】水稻基因型间对三化螟产卵的抗性存在显著差异,筛选评价抗螟种质应将对幼虫为害抗性与对雌蛾产卵抗性结合起来。     

Characterizing the influence of electron irradiation on scleroglucan

The electron irradiation effect on scleroglucans was investigated using different energy doses. Electron spin resonance spectra revealed radicals that were stable for several days. ¹H NMR, ¹³C NMR and Raman spectra indicated no differences in chemical backbone structure due to irradiation. In contrast, lower viscosities of aqueous solutions were received at higher energy doses. This was caused by polymer degradation. The irradiation also decreased the weight average molar masses observed by gel permeation chromatography and multi-angle light scattering. Beginning from raw materials exceeding 4 · 10⁶ Da, a number of main chain scissions of approximately 0.3 · 10⁻⁷ mol J⁻¹ was found. But for one scleroglucan quality the scission number decreased with higher doses. In addition, the characterization via asymmetrical flow field-flow fractionation proved the presence of low and high molar mass fractions. The electron irradiation led to a preferred scission of the high molar mass chains and increased the lower molar mass fraction. Due to this effect, the broadness of the molar mass distribution decreased.     

An AFLP marker that differentiates biotypes of the Asian rice gall midge (Orseolia oryzae, Wood-Mason) is sex-linked and also linked to avirulence

In an attempt to identify a specific marker for biotype 2 of the Asian rice gall midge (Orseolia oryzae, Wood-Mason), we used AFLP (amplified fragment length polymorphism) fingerprinting. We identified an AFLP marker that is specifically amplified in biotypes 1, 2 and 5 of the rice gall midge, but not in biotype 4. Biotypes 1, 2 and 5 are avirulent to hosts bearing the Gm2 resistance gene (found in rice variety Phalguna), whereas biotype 4 is virulent to Gm2. Based on the sequence of this AFLP marker, SCAR (sequence characterized amplified region) primers were designed and used in combination with previously developed SCAR primers to distinguish effectively all five biotypes in a multiplex PCR-based assay. The inheritance pattern of this marker in the progenies of inter-biotype crosses between biotypes 1, 2 and 4 shows that the marker can be amplified by PCR from all F₁ females, irrespective of the biotype status of their parents. However, the marker is present only in those male progenies whose mother was of a Gm2 avirulent biotype. The specific amplification of this marker in the avirulent biotypes and its pattern of inheritance show that avirulence with respect to carriers of the Gm2 gene in rice gall midge is sex-linked. Received: 16 August 1999 / Accepted: 27 December 1999     

Ethylene and ACC levels in developing grains are related to the poor appearance and milling quality of rice

The possible relationship between the levels of ethylene and 1-aminocylopropane-1-carboxylic acid (ACC) in the grains and the quality of rice (Oryza sativa L.) were investigated by using 12 rice cultivars. The results showed that both the ethylene evolution rate and ACC content in grains during the grain filling period correlated negatively with head rice production and positively with chalky kernels, chalky size, and chalkiness. The levels of ethylene and ACC were not significantly correlated with alkali spreading value and amylose content. Application of ethephon, an ethylene-releasing agent, or ACC to panicles at the early grain filling stage significantly reduced the rates of brown rice, milled rice, and head rice, and significantly increased the percentage of chalky kernels, chalky size, and chalkiness. Application of aminoethoxyvinylglycine, an inhibitor of ACC synthase, had the opposite effect. Chalkiness appears to be a senescence related phenomenon which is stimulated by ethylene. The results suggest that ethylene and ACC in grains play an important role in regulating rice quality, and that grain appearance and milling quality would be improved though the reduction of ethylene and ACC in grains during grain filling.