Genetic structure of arbuscular mycorrhizal populations in fallow and cultivated soils

The impact of fallowing on the genetic structure of arbuscular mycorrhizal fungi (AMF) was studied by hierarchical sampling of spores from four plots in a fallow and a cultivated field. A nested multiplex PCR approach was used to assign the spores to genotypes. Variable introns of the two protein-coding genes GmFOX2 and GmTOR2 were used as co-dominant genetic markers together with the large subunit (LSU) rDNA. The gene diversity and genetic structure of Glomus mosseae, Glomus geosporum and Glomus caledonium were compared within and between the fields. Spores of G. caledonium and G. geosporum were more abundant in the cultivated field, whereas G. mosseae was more frequent in the fallow field. The number of genotypes was not different between the two fields. Analysis of gene diversity of G. caledonium in the fallow field indicated that a larger part of the heterogeneity could be attributed to variation between plots rather than subplots, suggesting that the lack of soil cultivation resulted in more heterogeneous population genetic structures. Analyses of haplotype networks of the fungi suggested a subdivision of G. mosseae haplotypes between the two fields, whereas no such division was seen in G. geosporum and G. caledonium. The results show that agricultural practices differently affect both the abundance and the population structure of different AMF species.     

Genetic diversity of the arbuscular mycorrhizal fungus Glomus intraradices as determined by mitochondrial large subunit rRNA gene sequences is considerably higher than previously expected

Glomus intraradices is a widespread arbuscular mycorrhizal fungus (AMF), which has been found in an extremely broad range of habitats, indicating a high tolerance for environmental factors and a generalist life history strategy. Despite this ecological versatility, not much is known about the genetic diversity of this fungal species across different habitats or over large geographic scales. A nested polymerase chain reaction (PCR) approach for the mitochondrial rRNA large subunit gene (mtLSU), distinguished different haplotypes among cultivated isolates of G. intraradices and within mycorrhizal root samples from the field. From analysis of 16 isolates of this species originating from five continents, 12 mitochondrial haplotypes were distinguished. Five additional mtLSU haplotypes were detected in field-collected mycorrhizal roots. Some introns in the mtLSU region appear to be stable over years of cultivation and are ancestral to the G. intraradices clade. Genetic diversity within G. intraradices is substantially higher than previously thought, although some mtLSU haplotypes are widespread. A restriction fragment length polymorphism approach also was developed to distinguish mtLSU haplotypes without sequencing. Using this molecular tool, intraspecific genetic variation of an AMF species can be studied directly in field plants.     

AMF components from a microbial inoculum fail to colonize roots and lack soil persistence in an arable maize field

Arbuscular mycorrhizal fungi (AMF) are root obligate biotrophs that provide the host with nutrients and pathogen protection, in exchange of photosynthetic products. A decline in AMF diversity can reduce the overall benefit for host plants. A sustainable strategy to re-establish AMF diversity is to supply the target soil with AMF inoculants. After inoculation, it is essential to verify whether the inoculants successfully colonize the host plant and persist, and if the resident AMF community is affected. The AMF components of a microbial inoculum (including other saprotrophs) that was applied to maize were identified and traced in field by 454-pyrosequencing of the partial rRNA 18S gene. In addition, mycorrhizal colonization and plant biomass were monitored in inoculated and non-inoculated maize. The inoculated AMF taxa failed to colonize roots and lacked soil persistence. Nevertheless, the inoculation process reduced species dominance and increased diversity in the pre-existing AMF community. No differences were seen between mycorrhizal colonization in treated and control maize. We suggest that the slightly significant increase in treated plant biomass was potentially due to (i) marginally colonizing inoculated AMF that remained unseen and other saprotroph inoculants applied and/or (ii) the effect of inoculation on the pre-existing AMF community in treated maize roots.     

Identity and combinations of arbuscular mycorrhizal fungal isolates influence plant resistance and insect preference

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Genetic variability in a population of arbuscular mycorrhizal fungi causes variation in plant growth

Different species of arbuscular mycorrhizal fungi (AMF) alter plant growth and affect plant coexistence and diversity. Effects of within-AMF species or within-population variation on plant growth have received less attention. High genetic variation exists within AMF populations. However, it is unknown whether genetic variation contributes to differences in plant growth. In our study, a population of AMF was cultivated under identical conditions for several generations prior to the experiments thus avoiding environmental maternal effects. We show that genetically different Glomus intraradices isolates from one AMF population significantly alter plant growth in an axenic system and in greenhouse experiments. Isolates increased or reduced plant growth meaning that plants potentially receive benefits or are subject to costs by forming associations with different individuals in the AMF population. This shows that genetic variability in AMF populations could affect host-plant fitness and should be considered in future research to understand these important soil organisms.     

Field Evaluation of Arbuscular Mycorrhizal Fungal Colonization in Bacillus thuringiensis Toxin-Expressing (Bt) and Non-Bt Maize

The cultivation of genetically engineered Bacillus thuringiensis toxin-expressing (Bt) maize continues to increase worldwide, yet the effects of Bt crops on arbuscular mycorrhizal fungi (AMF) in soil are poorly understood. In this field experiment, we investigated the impact of seven different genotypes of Bt maize and five corresponding non-Bt parental cultivars on AMF and evaluated plant growth responses at three different physiological time points. Plants were harvested 60 days (active growth), 90 days (tasseling and starting to produce ears), and 130 days (maturity) after sowing, and data on plant growth responses and percent AMF colonization of roots at each harvest were collected. Spore abundance and diversity were also evaluated at the beginning and end of the field season to determine whether the cultivation of Bt maize had a negative effect on AMF propagules in the soil. Plant growth and AMF colonization did not differ between Bt and non-Bt maize at any harvest period, but AMF colonization was positively correlated with leaf chlorophyll content at the 130-day harvest. Cultivation of Bt maize had no effect on spore abundance and diversity in Bt versus non-Bt plots over one field season. Plot had the most significant effect on total spore counts, indicating spatial heterogeneity in the field. Although previous greenhouse studies demonstrated that AMF colonization was lower in some Bt maize lines, our field study did not yield the same results, suggesting that the cultivation of Bt maize may not have an impact on AMF in the soil ecosystem under field conditions.     

Options of partners improve carbon for phosphorus trade in the arbuscular mycorrhizal mutualism

The mutualism between plants and arbuscular mycorrhizal fungi (AMF) is widespread and has persisted for over 400 million years. Although this mutualism depends on fair resource exchange between plants and fungi, inequality exists among partners despite mechanisms that regulate trade. Here, we use ³³P and ¹⁴C isotopes and a split‐root system to test for preferential allocation and reciprocal rewards in the plant–AMF symbiosis by presenting a plant with two AMF that differ in cooperativeness. We found that plants received more ³³P from less cooperative AMF in the presence of another AMF species. This increase in ³³P resulted in a reduced ¹⁴C cost per unit of ³³P from less cooperative AMF when alternative options were available. Our results indicate that AMF diversity promotes cooperation between plants and AMF, which may be an important mechanism maintaining the evolutionary persistence of and diversity within the plant–AMF mutualism.     

Chemical defense,mycorrhizal colonization and growth responses in <Emphasis Type="Italic">Plantago lanceolata</Emphasis> L.

Allelochemicals defend plants against herbivore and pathogen attack aboveground and belowground. Whether such plant defenses incur ecological costs by reducing benefits from plant mutualistic symbionts is largely unknown. We explored a potential trade-off between inherent plant chemical defense and belowground mutualism with arbuscular mycorrhizal fungi (AMF) in Plantago lanceolata L., using plant genotypes from lines selected for low and high constitutive levels of the iridoid glycosides (IG) aucubin and catalpol. As selection was based on IG concentrations in leaves, we first examined whether IG concentrations covaried in roots. Root and leaf IG concentrations were strongly positively correlated among genotypes, indicating genetic interdependence of leaf and root defense. We then found that root AMF arbuscule colonization was negatively correlated with root aucubin concentration. This negative correlation was observed both in plants grown with monocultures of Glomus intraradices and in plants colonized from whole-field soil inoculum. Overall, AMF did not affect total biomass of plants; an enhancement of initial shoot biomass was offset by a lower root biomass and reduced regrowth after defoliation. Although the precise effects of AMF on plant biomass varied among genotypes, plants with high IG levels and low AMF arbuscule colonization in roots did not produce less biomass than plants with low IG and high AMF arbuscule colonization. Therefore, although an apparent trade-off was observed between high root chemical defense and AMF arbuscule colonization, this did not negatively affect the growth responses of the plants to AMF. Interestingly, AMF induced an increase in root aucubin concentration in the high root IG genotype of P. lanceolata. We conclude that AMF does not necessarily stimulate plant growth, that direct plant defense by secondary metabolites does not necessarily reduce potential benefits from AMF, and that AMF can enhance concentrations of root chemical defenses, but that these responses are plant genotype-dependent.     

Benefit, cost and water-use efficiency of arbuscular mycorrhizal durum wheat grown under drought stress

 Arbuscular mycorrhizal fungi (AMF) living symbiotically with host plants enhance plant growth by improving the acquisition of mineral nutrients and water relations. This study determined the effects of AMF inoculation on growth, benefit/cost and water-use efficiency (grams dry matter produced per kilogram water evapotranspired) in two durum wheat genotypes (drought sensitive and drought tolerant) under water-stressed and well-watered conditions. Plants were grown in a low-P silty clay (Typic Xerochrept) soil mix in a greenhouse. Shoot and root dry matter (DM) and root AMF colonization were higher for well-watered than for water-stressed plants. The mycorrhizal plants were more water-use efficient than nonmycorrhizal plants. Shoot DM differences between mycorrhizal and nonmycorrhizal plants represent the benefit derived by plants from AMF-root associations. Shoot DM differences between mycorrhizal and nonmycorrhizal plants under similar conditions of water treatment represent the cost to the plant of AMF-root associations. Values of benefit/cost for AMF-root associations were highest when plants were water-stressed and decreased under well-watered conditions. Genotypic differences in calculated costs and benefits were pronounced. Benefit/cost analysis may be helpful in evaluating host plant genotypes in order to optimize efficiencies of AMF symbiosis under different environmental conditions. Accepted: 4 April 1998     

Phylogenetic conservatism in plant‐soil feedback and its implications for plant abundance

We examined whether plant‐soil feedback and plant‐field abundance were phylogenetically conserved. For 57 co‐occurring native and exotic plant species from an old field in Canada, we collected a data set on the effects of three soil biota treatments on plant growth: net whole‐soil feedback (combined effects of mutualists and antagonists), feedback with arbuscular mycorrhizal fungi (AMF) collected from soils of conspecific plants, and feedback with Glomus etunicatum, a dominant mycorrhizal fungus. We found phylogenetic signal in both net whole‐soil feedback and feedback with AMF of conspecifics; conservatism was especially strong among native plants but absent among exotics. The abundance of plants in the field was also conserved, a pattern underlain by shared plant responses to soil biota. We conclude that soil biota influence the abundance of close plant relatives in nature.     

入侵植物与本地植物互作对丛枝菌根真菌AMF侵染率的影响

外来植物成功入侵与菌根共生体存在着密不可分的关系,丛枝菌根真菌（AMF）侵染率是反映其侵染植物情况的重要指标,影响侵染率的因素很多,但是入侵植物与本地植物互作对AMF侵染率的影响目前还不清楚。因此,本研究以外来入侵植物黄顶菊Flaveria bidentis、豚草Ambrosia artemisiifolia、三叶鬼针草Bidens pilosa和本地植物狗尾草Setaria viridis、黄香草木犀Melilotus officinalis、藜Chenopodium album为研究对象,设置入侵植物单种处理、本地植物单种处理、每种入侵植物分别与本地植物两两混种处理以及每种入侵植物同时与所有本地植物混种处理,观察测定不同处理下入侵植物与本地植物根系丛枝、泡囊、菌丝及总侵染率,比较研究本地植物种类变化对入侵植物和本地植物根系AMF侵染率的影响,以及3种入侵菊科植物对本地植物AMF侵染率的影响规律是否一致。结果表明,与入侵植物单种相比,除豚草与藜、豚草同时与3种本地植物混种两个处理中,豚草根系的AMF菌丝及总侵染率显著增加外,其余所有处理中入侵植物总侵染率均无显著差异;与狗尾草或黄香草木犀单种相比,每种入侵植物同时与所有本地植物混种处理中,本地植物狗尾草和黄香草木犀根系上的AMF菌丝及总侵染率均显著降低,即随本地植物种类数目的增加,对本地植物根系的菌丝及总侵染率存在显著抑制作用,而对入侵植物无显著影响。     

AM真菌物种多样性:生态功能、影响因素及维持机制

AM真菌物种多样性是土壤生态系统生物多样性的重要组分之一。尽管对AM真菌多样性已有多年研究,但是,已有研究绝大多数仅停留在对AM真菌群落种属解析层面上,对AM真菌物种多样性生态功能及维持机制方面的认识较浅。从生态功能、影响因素及维持机制3个方面系统地综述了近年来AM真菌多样性领域的研究进展。认为AM真菌多样性对植物群落生产力的调控机制及结合理论与实践解析AM真菌多样性维持机制是该领域未来的重点研究方向。     

Spatial soil heterogeneity has a greater effect on symbiotic arbuscular mycorrhizal fungal communities and plant growth than genetic modification with Bacillus thuringiensis toxin genes

Maize, genetically modified with the insect toxin genes of Bacillus thuringiensis (Bt), is widely cultivated, yet its impacts on soil organisms are poorly understood. Arbuscular mycorrhizal fungi (AMF) form symbiotic associations with plant roots and may be uniquely sensitive to genetic changes within a plant host. In this field study, the effects of nine different lines of Bt maize and their corresponding non‐Bt parental isolines were evaluated on AMF colonization and community diversity in plant roots. Plants were harvested 60 days after sowing, and data were collected on plant growth and per cent AMF colonization of roots. AMF community composition in roots was assessed using 454 pyrosequencing of the 28S rRNA genes, and spatial variation in mycorrhizal communities within replicated experimental field plots was examined. Growth responses, per cent AMF colonization of roots and AMF community diversity in roots did not differ between Bt and non‐Bt maize, but root and shoot biomass and per cent colonization by arbuscules varied by maize cultivar. Plot identity had the most significant effect on plant growth, AMF colonization and AMF community composition in roots, indicating spatial heterogeneity in the field. Mycorrhizal fungal communities in maize roots were autocorrelated within approximately 1 m, but at greater distances, AMF community composition of roots differed between plants. Our findings indicate that spatial variation and heterogeneity in the field has a greater effect on the structure of AMF communities than host plant cultivar or modification by Bt toxin genes.     

Effects of using different host plants and long-term fertilization systems on population sizes of infective arbuscular mycorrhizal fungi

The effect of cultivation of mycorrhizal and non-mycorrhizal plants and mineral fertilization on the arbuscular mycorrhizal fungal (AMF) community structure of maize (Zea mays L.) plants was studied. Soil samples were collected from two field experiments treated for 5 years with three fertilization systems (Control – no fertilization; Mineral – NPK fertilization; and Organic – Farmyard manure fertilization). Soil samples containing soil and root fragments of rapeseed (Brassica napus L., non-mycorrhizal plant) and wheat (Triticum aestivum L., mycorrhizal plant) collected from the field plots were used as native microbial inoculum sources to maize plants. Maize plants were sown in pots containing these inoculum sources for four months under glasshouse conditions. Colonization of wheat roots by AMF, AMF community structure, AMF diversity (Shannon’s index), AMF dominance (Simpson’s index) and growth of maize were investigated. Sixteen AMF species were identified from rhizosphere soil samples as different species of genera Acaulospora, Claroideoglomus, Dentiscutata, Funneliformis, Gigaspora, Quatunica, Racocetra, and Rhizoglomus. Maize plants grown in manure-fertilized soils had a distinct AMF community structure from plants either fertilized with mineral NPK-fertilizer or non-fertilized. The results also showed that inoculum from non-mycorrhizal plants combined with mineral fertilization decreased AMF diversity (Shannon’s index), AMF dominance (Simpson’s index) and growth of maize. Our findings suggest that non-mycorrhizal plants, such as B. napus, can negatively affect the presence and the effects of soil inoculation on maize growth. Also, our results highlight the importance of considering the long-term effect of rapeseed cultivation system on the reduction of population sizes of infective AMF, and its effect on succeeding annual crops.     

Relatedness among arbuscular mycorrhizal fungi drives plant growth and intraspecific fungal coexistence

Arbuscular mycorrhizal fungi (AMF) form symbioses with most plant species. They are ecologically important determinants of plant growth and diversity. Considerable genetic variation occurs in AMF populations. Thus, plants are exposed to AMF of varying relatedness to each other. Very little is known about either the effects of coexisting AMF on plant growth or which factors influence intraspecific AMF coexistence within roots. No studies have addressed whether the genetics of coexisting AMF, and more specifically their relatedness, influences plant growth and AMF coexistence. Relatedness is expected to influence coexistence between individuals, and it has been suggested that decreasing ability of symbionts to coexist can have negative effects on the growth of the host. We tested the effect of a gradient of AMF genetic relatedness on the growth of two plant species. Increasing relatedness between AMFs lead to markedly greater plant growth (27% biomass increase with closely related compared to distantly related AMF). In one plant species, closely related AMF coexisted in fairly equal proportions but decreasing relatedness lead to a very strong disequilibrium between AMF in roots, indicating much stronger competition. Given the strength of the effects with such a shallow relatedness gradient and the fact that in the field plants are exposed to a steeper gradient, we consider that AMF relatedness can have a strong role in plant growth and the ability of AMF to coexist. We conclude that AMF relatedness is a driver of plant growth and that relatedness is also a strong driver of intraspecific coexistence of these ecologically important symbionts.     

丛枝菌根养分吸收和转运机制的研究历史与进展

丛枝菌根真菌(AMF)在土壤生态系统中分布最广且在农业生态系统中作用最大,是颇受研究人员关注的一类菌根真菌。多年来,人们尝试着用各种技术和方法从不同角度、不同层次对AMF与植物的互惠机制进行研究并取得了较大进展。近年来分子技术在该领域得以广泛应用,使得人们对这一共生体的互惠机制有了更为详尽的了解。从营养学角度入手,综述了国内外关于丛枝菌根(AM)真菌对土壤中养分吸收和转运机制的研究进展,并在概括当前AMF促生机制研究热点的基础上对其发展前景作了展望。     

Infection by mycorrhizal fungi increases natural enemy abundance on tobacco (Nicotiana rustica)

The presence of arbuscular mycorrhizal fungi (AMF) influences plant nutrient uptake, growth, and plant defensive chemistry, thereby directly influencing multi-trophic interactions. Different fungal isolates (genotypes of the same fungal species) have been shown to differ in nutrient uptake ability. Plants infected with different AMF genotypes may vary in foliar nutrient or defensive chemical levels, potentially influencing multi-trophic interactions. Using a completely randomized design, we compared the effect of two isolates of the mycorrhizal fungus Glomus etunicatum W. N. Becker & Gerdemann on silver leaf whitefly (Bemisia argentifolii Bellows & Perring) (Hemiptera: Aleyrodidae) and parasitic wasp (Eretmocerus eremicus Rose & Zolnerowich) (Hymenoptera: Aphelinidae) abundance. Whitefly populations were not influenced by AMF infection. Parasite populations were higher on plants infected with the isolate collected from Georgia, even after controlling for whitefly abundance and plant architecture. We propose that AMF indirectly influences parasite abundance and parasitism through a change in leaf surface chemicals that affect parasitic wasps. Because of the ubiquity of and genetic variation in AMF, multi-trophic interactions are likely to be strongly influenced by belowground processes.     

Interactive effects of mycorrhizae and a root hemiparasite on plant community productivity and diversity

Plant communities can be affected both by arbuscular mycorrhizal fungi (AMF) and hemiparasitic plants. However, little is known about the interactive effects of these two biotic factors on the productivity and diversity of plant communities. To address this question, we set up a greenhouse study in which different AMF inocula and a hemiparasitic plant (Rhinanthus minor) were added to experimental grassland communities in a fully factorial design. In addition, single plants of each species in the grassland community were grown with the same treatments to distinguish direct AMF effects from indirect effects via plant competition. We found that AMF changed plant community structure by influencing the plant species differently. At the community level, AMF decreased the productivity by 15–24%, depending on the particular AMF treatment, mainly because two dominant species, Holcus lanatus and Plantago lanceolata, showed a negative mycorrhizal dependency. Concomitantly, plant diversity increased due to AMF inoculation and was highest in the treatment with a combination of two commercial AM strains. AMF had a positive effect on growth of the hemiparasite, and thereby induced a negative impact of the hemiparasite on host plant biomass which was not found in non-inoculated communities. However, the hemiparasite did not increase plant diversity. Our results highlight the importance of interactions with soil microbes for plant community structure and that these indirect effects can vary among AMF treatments. We conclude that mutualistic interactions with AMF, but not antagonistic interactions with a root hemiparasite, promote plant diversity in this grassland community. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.