Electrophoretic analysis of proteins from night-blind mutants of Phycomyces

Using two-dimensional gel electrophoresis, we have analyzed proteins from a plasma membrane-enriched fraction from Phycomyces sporangiophores. Specifically, we have compared gels for night-blind mutants and a wild-type strain to find proteins involved in the early steps of the sensory transduction chain for phototropism. In the gels for a mutant affected in the gene madA, a protein spot [51 kilodaltons (kdal) and pI 6.35] appears that is absent from the wild-type and the other mad mutants. Mutants affected in either of two madB alleles lack a protein spot (57 kdal and pI 6.6) that is present in the wild-type and all other mad strains; this spot probably represents the madB gene product. In some madC mutants, two spots (59 kdal, pI 6.5, with a covalently linked flavin; and 50 kdal, pI 6.4) are absent; however, in other madC strains, one or both of these spots are present. These four protein spots that are altered in madA, madB, and madC mutants may represent components of the photoreceptor complex responsible for phototropism in Phycomyces.This work was supported in part by an equipment grant to JAP from the Syracuse University Senate Research Committee, research grants to EDL from the National Science Foundation (PCM-8003915 and DMB-8316458), and a fellowship to EDL from the Alfred P. Sloan Foundation.     

A new gene (madI) involved in the phototropic response of Phycomyces

Summary Only eight genes are known to be involved in the phototropic response of Phycomyces (madA-H). Mutants affected in these genes have played a major role in the analysis of photosensory transduction processes in this system. A set of new mutants isolated by Alvarez et al. (1989) that are unable to bend towards dim unilateral blue light were studied by complementation and recombination. Two of these mutants have mutations in madE, one has a mutation in madF and one is a double madE madF mutant. The three remaining mutants tested did not complement each other and showed positive complementation with strains carrying mutations in the genes madA, madB, and madC, indicating that they carried mutations in a new gene designated madI. Recombination analysis showed that madI is unlinked to madA, madB and madC.     

System analysis of Phycomyces light-growth response: madC, madG, and madH mutants.

The light-growth response of Phycomyces has been studied further with the sum-of-sinusoids method in the framework of the Wiener theory of nonlinear system identification. The response was treated as a black box with the logarithm of light intensity as the input and elongation rate as the output. The nonlinear input-output relation of the light-growth response can be represented mathematically by a set of weighting functions called kernels, which appear in the Wiener intergral series. The linear (first-order) kernels of wild type, and of single and double mutants affected in genes madA to madG were determined previously with Gaussian white noise test stimuli, and were used to investigate the interactions among the products of these genes (R.C. Poe, P. Pratap, and E.D. Lipson. 1986. Biol. Cybern. 55:105.). We have used the more precise sum-of-sinusoids method to extend the interaction studies, including both the first- and second-order kernels. Specifically, we have investigated interactions of the madH ("hypertropic") gene product with the madC ("night blind") and madG ("stiff") gene products. Experiments were performed on the Phycomyces tracking machine. The log-mean intensity of the stimulus was 6 x 10(-2) W m-2 and the wavelength was 477 nm. The first- and second-order kernels were analyzed in terms of nonlinear kinetic models.(ABSTRACT TRUNCATED AT 250 WORDS)     

System analysis of Phycomyces light-growth response: Single mutants

The white-noise method of system identification has been applied to the transient light-growth response of a set of seven mutants of Phycomyces with abnormal phototropism, affected in genes madA to madG. The Wiener kernels, which represent the input-output relation of the light-growth response, have been evaluated for each of these mutants and the wild-type strain at a log-mean blue-light intensity of 0.1 W m^-2. Additional experiments were done at 3x10^-4 and 10 W m^-2 on the madA strain C21 and wild-type. In the normal intensity range (0.1 W m^-2) the madA mutant behaves similarly to wild-type, but, at high intensity, the madA response is about twice as strong as that of wild-type. Except for C21 (madA), the first-order kernels of all mutants were smaller than the wild-type kernel. The first-order kernels for C111 (madB) and L15 (madC) show a prolonged time course, and C111 has a longer latency. The kernels for C110 (madE), C316 (madF), and C307 (madG) have a shallow and extended negative phase. For C68 (madD), the latency and time course are shorter than in the wild-type. These features are also reflected in the parameters estimated from fits of the anlytical model introduced in the previous paper to the experimental transfer functions (Fourier transforms of the kernels). The kernel for L15 (madC) is described better by a model that lacks one of the two second-order low-pass filters, because its response kinetics are dynamically of lower order.     

High-and low-intensity photosystems in Phycomyces phototropism: Effects of mutations in genes madA,madB, and madC

Sporangiophores of Phycomyces blakesleeanus Burgeff that have been grown in darkness and are then suddenly exposed to unilateral light show a two-step bending response rather than a smooth, monotonic response found in light-adapted specimens (Galland and Lipson, 1987, Proc. Natl. Acad. Sci. USA 84, 104–108). The stepwise bending is controlled by two photosystems optimized for the low-and high-intensity ranges. These two photosystems have now been studied in phototropism mutants with defects in genes madA, madB, and madC. All three mutations raise the threshold of the low-intensity (low-fluence) photosystem by about 10⁶-fold and that of the high-intensity (high-fluence) system by about 10³-fold. Estimates for the light-adaptation time constants of the low-and high-intensity photosystems show that the mutants are affected in adaptation. In the mutants, the light-adaptation kinetics are only slightly affected in the low-intensity photosystem but, for the high-intensity photosystem, the kinetics are considerably slower than in the wild type.Abbreviations WT wild type     

Blue Light Reception in Phycomyces: Red Light Sensitization in madC Mutants

Sporangiophores of the zygomycete fungus Phycomyces blakesleeanus are sensitive to near UV and blue light. The quantum effectiveness of yellow and red light is more than 6 orders of magnitude below that of near UV or blue light. Phototropism mutants with a defect in the gene madC are about 10⁶ times less sensitive to blue light than the wild type. These mutants respond, however, to yellow and red light when the long wavelength light is given simultaneously with actinic blue light. In the presence of yellow or red light the photogravitropic threshold of madC mutants is lowered about 100-fold though the yellow and the red light alone are phototropically ineffective. A step-up of the fluence rate of broad-band red light (> 600 nm) from 6 × 10^?3 to 6W m^?2 elicits, in mutant C 148 madC, a transient deceleration of the growth rate. The growth rate of the wild type is not affected by the same treatment. The results are interpreted in terms of a red light absorbing intermediate of the blue light photoreceptor of Phycomyces. The intermediate should be short-lived in the wild type and should accumulate in madC mutants.     

Phototropism mutants of Phycomyces blakesleeanus isolated at low light intensity

Mutants of Phycomyces have played a major role in the analysis of phototropism and other responses. Fifteen new mutants of Phycomyces with abnormal phototropism (genotype mad) have been isolated on the basis of their inability to bend toward dim unilateral blue light (fluence rate 5 × 10⁻⁷ W m⁻²), a protocol different from those employed in previous mutant hunts. One mutant resulted from chemical mutagenesis with ICR-170, and the other 14 were induced with N-methyl-N′-nitro-N-nitro-soguanidine. Seven of the mutants are “night blind”; six have phototropic thresholds intermediate between those of wild type (10⁻⁹ W m⁻²) and madA strains (∼ 10⁻⁴ W m⁻²); and one has a threshold similar to that of night-blind madB and madC mutants. The other eight mutants are “stiff”, with various reductions of tropic responsiveness. Two of them, when compared to previously isolated stiff mutants, show unusually weak responses to light, barriers, and gravity.     

Light-induced absorbance changes in Phycomyces: evidence for cryptochrome-associated flavosemiquinones

Light-induced absorbance changes (LIACs), which are associated with early photochemical events of blue-light transduction, were detected in growing zones of Phycomyces sporangiophores. The novel LIACs meet all the essential requirements for a spectrophotometric photoreceptor assay which was previously unavailaible for blue-light receptors (cryptochromes). In-vivo absorption spectra of growing zones were derived from reflection spectra which were measured with a novel rapid-scan spectrophotometer. To detect photoreceptor-associated absorbance changes white mutants were employed which lack the interfering bulk pigment β-carotene. Blue and white light, not however red light, induced in these strains absorbance changes near 460–490 and 600–620 nm. The LIACs were absent in light-insensitive mutants with defects in the genes madA, madB and madC. Because these genes affect photosensory adaptation and the blue-light receptor itself, the novel in-vivo LIACs must be associated with photochemical events which occur early in the transduction chain. The spectral characteristics of the LIACs are in accordance with a blue- and red-light absorbing flavosemiquinone which is generated upon light absorption by an oxidized flavin receptor. It is proposed that the flavosemiquinone functions itself as photoreceptor which mediates several red-light responses of Phycomyces. Received: 28 September 1998 / Accepted: 25 November 1998     

Double mutants of Phycomyces with abnormal phototropism

Summary Seven genes (madA to madG) are known which effect phototropism in Phycomyces. These genes have been partially ordered with respect to the associated stimulus-response pathway. Mutants affected in these genes serve as useful probes of photosensory transduction processes in this model system. To extend and deepen the analysis of the system, we have constructed a family of 21 double mutants in all combinations for the seven mad genes. A set of seven standard alleles was adopted for this work. The double mutants were isolated from crosses between isogenic single-mutant strains of opposite mating type. After a partial physiologic screening of the progeny, the double mutants were identified by complementation tests using single-mutant strains of known genotype. For all but three of the double mutants, the photogeotropism phenotypes were distinct from those of the respective single-mutant parentals. One triple mutant (madA madB madC) was constructed as part of this work. Various applications of the double mutants and the triple mutant are discussed. Recombination analyses were performed on the progeny from seven mad crosses to complete an earlier study. The results establish that all seven mad genes are unlinked.     

System analysis of Phycomyces light-growth response with sum-of-sinusoids test stimuli.

The light-growth response of Phycomyces has been studied with the sum-of-sinusoids method of nonlinear system identification (Victor, J.D., and R.M. Shapley, 1980, Biophys. J., 29:459). This transient response of the sporangiophore has been treated as a black-box system with one input (logarithm of the light intensity, I) and one output (elongation rate). The light intensity was modulated so that log I, as a function of time, was a sum of sinusoids. The log-mean intensity was 10(-4) W m-2 and the wavelength was 477 nm. The first- and second-order frequency kernels, which represent the linear and nonlinear behavior of the system, were obtained from the Fourier transform of the response at the appropriate component and combination frequencies. Although the first-order kernel accounts for most of the response, there remains a significant nonlinearity beyond the logarithmic transducer presumed to occur at the input of the sensory transduction chain. From the analysis of the frequency kernels, we have derived a dynamic nonlinear model of the light-growth response system. The model consists of a nonlinear subsystem followed by a linear subsystem. The model parameters were estimated from a combined nonlinear least-squares fit to the first- and second-order frequency kernels.     

System analysis of Phycomyces light-growth response with gaussian white-noise test stimuli

The light-growth response of the Phycomyces sporangiophore is a transient change of elongation rate in response to changes in ambient blue-light intensity. The white-noise method of nonlinear system identification (Wiener-Lee-Schetzen theory) has been applied to this response, and the results have been interpreted by system analysis methods in the frequency domain. Experiments were performed on the Phycomyces tracking machine. Gaussian white-noise stimulus patterns were applied to the logarithm of the light intensity. The log-mean intensity of the broadband blue illumination was 0.1 W m^-2 and the standard deviation of the Gaussian white-noise was 0.58 decades. The results, in the form of temporal functions called Wiener kernels, represent the input-output relation of the light-growth response system. The transfer function, which was obtained as the Fourier transform of the first-order kernel, was analyzed in the frequency domain in terms of a dynamic model that consisted of a first-order high-pass filter, two secondorder low-pass filters, a delay element, and a gain factor. Parameters in the model (cutoff frequencies, damping coefficients, latency, and gain constant) were evaluated by nonlinear least-squares methods applied to the complex-valued transfer function. Analysis of the second-order kernel in the frequency domain suggests that the residual nonlinearity of the system lies close to the input.     

A new allele with abnormal cyclic-AMP phosphodiesterase activity in Phycomyces

Summary A mutant of the fungus Phycomyces blakesleeanus (Burgeff), C21 (madA7) that was isolated for its abnormal phototropism (Bergman et al. 1973) carries a secondary mutation pde-1 which is unlinked to the madA gene. The pde-1 allele causes the loss of about 80% of the cAMP phosphodiesterase activity. This allele is not essential for the photoreactions of the mycelium or the sporangiophore, and the bulk activity of the phosphodiesterase appears to play no role in the phototransduction pathway of Phycomyces.     

MEMBRANE POTENTIAL AND ENDOGENOUS ION CURRENT OF PHYCOMYCES SPORANGIOPHORES

Glass microelectrodes were inserted into the growing zone of sporangiophores of Phycomyces blakesleeanus that had been submersed in artificial pond water. The membrane potential (inside negative) increased with increasing pH of the bathing solution from an average of ?98 mV at pH 5 up to ?131 mV at pH 7. Removal of Ca²⁺ from the medium hyperpolarized the membrane potential in the wild type, but caused a significant depolarization in the blue-light-insensitive madC mutant. KCN, diethylstilbestrol, and N,N′-dicyclohexylcarbodiimide depolarized the membrane potential in both the wild type and the madC mutant, while fusicoccin had no effect. Endogenous ion current of up to 2 μA cm^?2 was measured in the growing zone of sporangiophores with an extracellular vibrating electrode. The current density and current pattern varied with the pH of the medium. At pH 5 most sporangiophores had weak inward current along the growing zone, whereas at pH 7 most sporangiophores had strong outward current. The response of the membrane potential to specific inhibitors and the presence of an endogenous ion current indicate an electrogenic H⁺-ATPase in the plasma membrane. The results show a negative correlation between growth rate of sporangiophores growing in buffered aqueous medium and magnitude of membrane potential, as well as density of outward current. They also indicate an important role of protons in controlling the growth of Phycomyces sporangiophores.     

System analysis of Phycomyces light-growth response: Double mutants

The light-growth response of Phycomyces has been studied with Gaussian white-noise test stimuli for a set of 21 double mutants affected in all pairwise combinations of genes madA to madG; these genes are associated with phototropism, the light-growth response, and other behaviors. The input-output relations of the light-growth responses of these mutants are represented by Wiener kernels in the time domain and transfer functions in the frequency domain. The results have been analyzed comparatively with those in the preceding papers on wild-type and single mutant strains. Two of the double night-blind mutants (combinations AB and BC) have especially weak, but still detectable, responses. To evaluate possible dynamic interactions among the seven mad gene products, each double-mutant transfer function was analyzed jointly with those of the parental single mutants and wild-type. Specifically, a hypothesis of dynamic independence was rejected at the 5% significance level for the following combinations: AD, AE, AG, BC, BD, BE, BF, BG, CD, CE, CF, DE, DG, and EF. A formal pictorial scheme summarizes the dynamic interactions among the mad gene products, according to this test. The high degree of interactions between the input gene products (A, B, and C) and the output gene products (D, E, F, and G) suggest that most or all of the sensory transduction pathway for the light-growth response (and phototropism) is contained in a multimolecular complex.     

System analysis of Phycomyces light-growth response. Wavelength and temperature dependence.

The light-growth response of the Phycomyces sporangiophore was studied further with the sum-of-sinusoids method of nonlinear system identification. The first- and second-order frequency kernels, which represent the input-output relation of the system, were determined at 12 wavelengths (383-529 nm) and 4 temperatures (17 degrees, 20 degrees, 23 degrees, and 26 degrees C). The parametric model of the light-growth response system, introduced in the preceding paper, consists of nonlinear and linear dynamic subsystems in cascade. The model parameters were analyzed as functions of wavelength and temperature. At longer wavelengths, the system becomes more nonlinear. The latency and the bandwidth (cutoff frequency) of the system also vary significantly with wavelength. In addition, the latency decreases progressively with temperature (Q10 = 1.6). At low temperature (17 degrees C), the bandwidth is reduced. The results indicate that about half of the latency is due to physical processes such as diffusion, and the other half to enzymatic reactions. The dynamics of the nonlinear subsystem also vary with wavelength. The dependence of various model components on wavelength supports the hypothesis that the light-growth response, as well as phototropism, are mediated by multiple interacting photoreceptors.     

Phycomyces: a new gene for a flavoprotein with covalently linked cofactor

Summary We have identified a new locus in Phycomyces blakesleeanus that codes for a flavoprotein designated previously as FP₂. According to results from a sexual cross, this locus, flp, maps near the gene madC, a marker for abnormal phototropic sensitivity. The recombination frequency between flp and madC is about 10%. Further, the flp marker is unlinked with the carotene locus carA. Because the flavoprotein FP₂ is absent in certain photoreceptor mutants (Pollock et al. 1985 a), it had been proposed as a candidate for the blue-light photoreceptor. We have found, however, that some strains lacking this protein retain normal phototropism. Therefore, the flavoprotein FP₂ is probably not involved in photoreception.     

(−) Mating Type-Specific Mutants ofPhycomycesDefective in Sex Pheromone Biosynthesis

Sutter, R. P., Grandin, A. B., Dye, B. D., and Moore, W. R. 1996. (−) Mating type-specific mutants ofPhycomycesdefective in sex pheromone biosynthesis.Fungal Genetics and Biology20,268–279. We have isolated the first mating type-specific mutants in mucoraceous fungi. Both mutants inPhycomyces blakesleeanusappear to be defective in the same gene. The gene, present in both mating types, is necessary only in cultures of the (−) mating type. The gene codes for an enzyme in sex pheromone biosynthesis. The pheromone precursor made by the mutants is detectable only in cross-feeding experiments. The biological and solubility properties of the precursor suggest the precursor is 4-dihydrotrisporin, a metabolite of β-carotene. Separate studies with β-carotene-deficient mutants and Compound-P, a new chemically synthesized precursor of the pheromones, imply the constitutive level of enzymes for pheromone biosynthesis inPhycomycesis extremely low. In comparison, the level of enzymes for pheromone conversion to trisporic acid is higher. The mating type-specific mutants also catalyze the conversion of (+) pheromone to trisporic acid. This finding was unexpected because literature models predicted this reaction was catalyzed by the same enzyme which catalyzed the conversion of 4-dihydrotrisporin to (−) pheromone—a reaction missing in the (−) mating type-specific mutants. Thus, we propose a revised model for trisporic acid biosynthesis.     

Stimulus coding in crayfish antennal mechanoreceptors estimated by noise analysis

Two different kinds of mechanoreceptive hairs (smooth and feathered) on the second antennae of the freshwater crayfish, Orconectes virilis, have been investigated for their stimulus coding propertics. These mechanoreceptors show a great deal of non-linear behaviour both in threshold and in directionality. An effective appraoch for the investigation of such systems is noise analysis in the frequency domain. This method has been used here to calculate zero-, first- and second-order kernels. Sensory cells reveal different first- and second-order kernels, depending on which type of hair is being stimulated. The first-order kernel has a pronounced peak in the frequency response at 110 Hz if a feathered hair is stimulated and at 60 Hz if a smooth hair is stimulated. The second-order kernel shows a number of pronounced peaks in the frequency response between 40 and 110 Hz, but only if a feathered hair is stimulated. Smooth hair stimulation results in less sharp peaks but in higher gain for the same range of stimulus frequencies.     

Nonlinear analysis of the human visual evoked response

Using time-domain correlation techniques, the first- and second-order Wiener kernels have been calculated for the system mediating the human visual evoked response. The first-order kernels indicate the linear element is a resonant one, with a natural frequency near 20 Hz, and a memory of approximately 250 ms. The transport delay associated with this element is approximately 56 ms. The second-order kernels indicate a quadratic nonlinear element with a memory less than 20 ms. The analytic form of this element can be approximated by a parabola shifted to the right of the origin. A close correspondance between the spectrum of the first-order kernel and the spectrum of the main diagonal of the second-order kernel suggests the nonlinear element preceeds the linear one. Tests of reproducibility on the first-order kernel and the main diagonal of the second-order kernel suggest they are reliable describing functions for the system mediating the human visual evoked response.