Filters and templates: stonefly (Plecoptera) richness in Ouachita Mountains streams, U.S.A.

1.  We collected adult stoneflies periodically over a 1-year period at 38 sites in two headwater catchments in the Ouachita Mountains, Arkansas, U.S.A. The 43 species collected were a subset of the Ozark-Ouachita fauna and the much larger fauna of the eastern U.S.A. We estimated 78–91% species coverage in the two catchments using jackknife extrapolation of species richness from our survey.
2.  Many streams, especially small ones, lacked surface water for months, but others, both small and large, flowed permanently.
3.  Using published regional presence–absence and coarse ecological data in a discriminant function analysis (DFA), we identified stream size (negative) and regional frequency of occurrence (positive) as predictors of presence in these headwater catchments. For the combined catchments, the extrapolated richness (51 spp.) was similar to an estimate (48 spp.) based on predicted absences from DFA and the Ouachita provincial total of known stonefly species (57 spp.).
4.  Local species richness (1–27 spp. per site) was correlated strongly with stream size (catchment area) but was independent of stream drying. Generic richness was correlated negatively with stream drying and positively, but less strongly, with stream size.
5.  Regionally endemic stoneflies dominated in drying streams, and widely distributed species dominated in more permanent streams. The composition of stonefly assemblages was associated with regional factors (species pools, regional abundance, evolution of tolerant endemic species, regional climate) and local factors (drying, stream size).     

Diversity and community composition of euglossine bee assemblages (Hymenoptera: Apidae) in western Amazonia

Tropical forests are known for their diverse insect fauna. We aimed to determine the effect and relative importance of latitude, elevation and climatic factors affecting species richness and turnover in euglossine bee assemblages along a gradient of 18° latitude from tropical rainforests to subtropical, deciduous dry forests in Peru and Bolivia. Sixteen forest sites were sampled during the dry season. Variance partitioning techniques were applied to assess the relative effects of the spatial and environmental variables on species richness and composition. Furthermore, we conducted a Species Indicator Analysis to find characteristic species for the biogeographic zones. There was a significant decrease in species richness towards the subtropical area. The best predictors of species richness were precipitation and its consequences on soil properties as well as temperature seasonality. The abundance of euglossines was most closely related to precipitation and soil-pH, but the causal links of abundance to these factors is unclear since soil-pH itself is correlated to a drastic turnover of vegetation structure. Based on the analysis of assemblage composition we propose three different assemblages with a transitional zone at the southern tropical area. The biogeographical distribution of euglossine bees along our study transect appears to be primarily related to climatic conditions and does not reflect the common subdividion of Amazonia into drainage systems.     

Fish assemblages in temporary ponds adjacent to 'terra-firme' streams in Central Amazonia

1. The effect of habitat structural features and physicochemical characteristics of the water on the composition and richness of fish assemblages in temporary ponds near streams were examined at three spatial scales: among ponds, among streams and between drainage basins, in a ‘terra‐firme’ (not subject to long‐term flooding) forest reserve in Central Amazonia. 2. The fish assemblage in temporary ponds was composed of subsets of 18 small‐bodied species widely distributed in the reserve. The assemblages had a nested subset structure, where smaller ponds contained subgroups of the species found in larger ponds. 3. Species composition and richness in temporary ponds were similar between drainage basins, although the fish assemblages in streams differed between basins. 4. Fish assemblage structure was influenced by local factors related to habitat structure, such as pond area and depth, canopy cover and hydroperiod. Physicochemical characteristics of the water in the ponds were similar between drainage basins and had little detectable effect on the structure of pond fish assemblages. 5. No correspondence was found between the composition, richness or abundance of fishes in the ponds and in stretches of the streams adjacent to the ponds. Therefore, it is not possible to predict the composition of these temporary pond fish assemblages from the fish assemblages found in adjacent streams.     

The effects of fire, local environment and time on ant assemblages in fens and forests

We investigated the effects of the abiotic environment, plant community composition and disturbance by fire on ant assemblages in two distinct habitat types in the Siskiyou Mountains in northern California and southern Oregon, USA. Sampling over 2 years in burned and unburned Darlingtonia fens and their adjacent upland forests, we found that the effects of disturbance by fire depended on habitat type. In forests, fire intensity predicted richness in ant assemblages in both years after the fire, and plant community composition predicted richness 2 years after the fire. No factors were associated with richness in the species‐poor fen ant assemblages. Species‐specific responses to both habitat type and disturbance by fire were idiosyncratic. Assemblage composition depended on habitat type, but not disturbance by fire, and the composition of each assemblage between years was more dissimilar in burned than unburned sites.     

The Colonization Response of Lotic Chironomid Larvae to Substrate Size and Heterogeneity

The colonization patterns of larval chironomid midges were studied on clean sieved sediments (range 0.25-4.0 mm; pure and mixed) placed in a third order stream in NW Pennsylvania, USA. Chironomid abundance and species richness were significantly different among four sites for homogeneous and mixed sediments. Species richness increased with sediment particle size. Fourteen of the 18 most common species had significant substrate preferences. The interpretation of two cluster analyses of sediment samples indicated two assemblages of chironomid species, each of which appeared to correlate with particular sediments, indicating some assemblage level sediment preference. Sediment size, but not heterogeneity, appears to be a strong factor in the species richness pattern of the community, and in the microhabitat choices of individual chironomid species, in this sandy environment.     

Species diversity estimation of ambrosia and bark beetles in temperate mixed forests in Japan based on host phylogeny and specificity

Understandings of the effect of host plant phylogeny on the structure of herbivore assemblage is useful for estimating global species richness of herbivores. Here we test the relationship between host plant phylogeny and two assemblages including ambrosia beetle assemblage that have been considered to be the lowest host specificity among plant-dependent guilds. These results of local scale were used for estimating regional species richness by extrapolating to the number of plant order and species in Japan. The estimated numbers were compared with the numbers of described species in Japan. Tree trunks of 17 plant species representing 17 orders of all major lineages of Japanese tree flora were exposed for collecting wood boring beetle species. A total of 12 ambrosia and four bark beetle species were collected. Similarity of both ambrosia and bark beetle assemblages showed a significant negative trend with phylogenetic distance between focal host plant species. The regression model for this relationship was well fit by a linear model whereas previous studies used a semi-log model, which suggests a difference in mechanism of host utilization with host taxonomic levels. Our results showed a broader host range of ambrosia beetle assemblage in temperate forest than to a comparable study in tropical rainforests. Species richness estimated is lower than the described species in Japan, suggesting the need for more samples along the altitudinal gradients for accurate estimation for the Japanese fauna.     

Macroecology of a host-parasite relationship

The larvae of freshwater mussels are obligate ectoparasites on fishes while adults are sedentary and benthic. Dispersal of mussels is dependent on the movement of fish hosts, a regional process, but growth and reproduction should be governed by local processes. Thus, mussel assemblage attributes should be predictable from the regional distribution and abundance of fishes. At a broad spatial scale in the Red River drainage, USA, mussel species richness and fish species richness were positively associated; maximum mussel richness was limited by fish richness, but was variable beneath that constraint. Measured environmental variables and the associated local fish assemblages each significantly accounted for the regional variation in mussel assemblages. Furthermore, mussel assemblages showed strong spatial autocorrelation. Variation partitioning revealed that pure fish effects accounted for 15.4% of the variation in mussel assemblages; pure spatial and environmental effects accounted for 16.1% and 7.8%, respectively. Shared variation among fish, space and environmental variables totaled 40%. Of this shared variation, 36.8% was associated with the fish matrix. Thus, the variation in mussel assemblages that was associated with the distribution and abundance of fishes was substantial (> 50%), indicating that fish community structure is an important determinant of mussel community structure. Although animals commonly disperse plants and, thus, influence the structure of plant communities, our results show a strong macroecological association between two disparate animal groups with one strongly affecting the assemblage structure of the other.     

Patterns of fish species richness in the Seine River basin,France

Variation in fish assemblage structure was examined in different rivers of the Seine Basin. Factor analysis was used to identify similarities among samples and species, and to show ichtyological changes along an upstream-downstream gradient. Fish species richness was correlated with catchment area, distance from the source and number of individuals. Relationships between species richness and number of individuals in a sample were largely an artifact of sampling.Species richness increased with river size, reached a maximum in midsize rivers, then decreased in large rivers. This species richness pattern was consistent with the model of the River Continuum Concept. However, possible causes could include greater pollution effects in large rivers. Distribution of feeding guilds was related to river size. Species richness and proportion of omnivores and piscivores increased with river size, whereas species richness and proportion of invertivores declined downstream. These patterns suggest that trophic diversity of fish assemblages may be related to food availability.     

Upstream effects of a reservoir on fish assemblages 45 years following impoundment

Fish assemblage structure, rarefied species richness, species diversity and evenness of assemblages upstream of a reservoir in Oklahoma, U.S.A., were compared pre and post‐impoundment as well as in contemporary collections from streams above and below the reservoir. There were significant shifts in assemblage structure between historical and contemporary collections above the reservoir but not between contemporary assemblages above and below the impoundment. Indicator species analysis revealed that the sand shiner Notropis stramineus and fathead minnow Pimephales promelas have declined, whereas largemouth bass Micropterus salmoides and western mosquitofish Gambusia affinis have increased in relative abundance in assemblages upstream of the impoundment. Species richness was lower in contemporary assemblages compared with historical assemblages. Furthermore, contemporary assemblages below the dam had lower species richness, diversity and evenness compared with contemporary collections above the dam. These results highlight the spatial and temporal extent of reservoirs altering fish assemblages upstream of impoundments.     

Echolocation and roosting ecology determine sensitivity of forest‐dependent bats to coffee agriculture

Species differ in vulnerability to anthropogenic land use changes. Knowledge of the mechanisms driving differential sensitivity can inform conservation strategies but is generally lacking for species‐rich taxa in the tropics. The diverse bat fauna of Southeast Asia is threatened by rapid loss of forest and expanding agricultural activities, but the associations between species, traits, vulnerability to agriculture, and the underlying drivers have yet to be elucidated. We studied the responses of speciose insectivorous bat assemblages to robusta coffee cultivation in Sumatra, Indonesia. We compared abundance, species richness, and assemblage structures of bats between forests and coffee farms based on trapping data and evaluated the influence of vegetation complexity on assemblage composition and species‐level reactions. Bat abundance and species richness were significantly lower in coffee farms than in forests. Bat assemblage structure differed between land uses, and the overall variation can be largely explained by vegetation simplification. Species sensitive to coffee agriculture were associated with more complex vegetation structure, whereas tolerant species were associated with simpler vegetation structure. Sensitive and tolerant species differed in the type, frequency, and bandwidth of echolocation calls and roost use. Species sensitive to coffee use broadband and high‐pitched frequency‐modulated calls, which are efficient at detecting insects in complex vegetation, and roost in plant structures that may be lost as vegetation is simplified. In contrast, tolerant species used lower pitched constant‐frequency calls and roost in caves. We advocate for greater use of trait analyses in studies seeking to clarify the influence of agriculture on diverse tropical bat faunas. Abstract in Indonesian is available with online material.     

Seasonality of macroalgal assemblages in a wave-eroded intertidal granite shore at Chengshan Cape, on the northwest coast of the Yellow Sea

An ecological survey was carried out at bimonthly intervals for 2 years from 2000 to 2002 in the intertidal granite shore at Chengshan Cape, on the northwest coast of the Yellow Sea. Significant differences in macroalgal composition were evident in different seasonal assemblages. The highest species richness was found from April to August, and the lowest in October. In all the seasonal assemblages surveyed, Rhodophyta showed the highest species richness, Phaeophyta ranked second and Chlorophyta last. Macroalgal biomass peaked in August (246 gm^-2). From December to February cold-water species, such asEnteromorpha intestinalis, Porphyra spp., Gelidium amansii, Halymennia sinensis, Laminaria japonica and Polysiphonia urceolata, dominated the assemblage.In June warm-temperate and subtropical species became dominant. Species diversity peaked in April and then declined throughout the year until December. The seasonal assemblages surveyed could be grouped into an Enteromorpha-Corallina-Ulva dominated winter-spring association, a Sargassum-Ulva-Corallina dominated summer association and an Ulva-Gymnogongrus-Sargassum dominated autumn association.Regression analysis showed that changes in seawater temperature were the main influence on macroalgal biomass. Assemblage structure is influenced by substrate heterogeneity resulting from wave action at Chengshan Cape.     

Importance of historical factors on species richness and composition of butterfly assemblages (Lepidoptera: Rhopalocera) in a northern Iberian mountain range

ABSTRACT. The butterfly assemblages of three vegetation types (pasture, heathland and rocky outcrop with Genista spp.) and two geographical orientations (a northern slope and a sheltered gorge) were studied along an altitudinal gradient in the Picos de Europa in northern Spain. In order to study the effects or historical climatic changes on current butterfly assemblages, it was examined if changes in richness and faunal composition of assemblages were joined with changes in their biogeographical composition. The three vegetation types showed characteristic butterfly assemblages, but no difference in species richness and biogeographical composition was found. Species richness in the sheltered gorge was higher than in the northern slope. Faunal composition also varied between orientations and there were more widespread and Mediterranean species in the sheltered gorge than in the northern slope. Species richness declined with increasing altitude, though a midaltitudinal peak was observed. There was a faunal segregation between high and low localities. Species richness of widespread and Mediterranean butterflies decreased as altitude increased, whereas the reverse was true for montane species. Moreover, biogeographical elements differed in their climatic tolerances measured as altitudinal ranges. Therefore, changes in richness and composition of butterfly assemblages between both slopes and along the altitudinal gradient were joined in part with variation in their biogeographical composition. These results suggest that current species richness and composition of butterfly assemblages in the Picos de Europa might be the consequence of differential colonization of refuges during the past climatic changes.     

Radiolarian faunal turnover across the Oligocene/Miocene boundary in the equatorial Pacific Ocean

The global warming trend of the latest Oligocene was interrupted by several cooling events associated with Antarctic glaciations. These cooling events affected surface water productivity and plankton assemblages. Well-preserved radiolarians were obtained from upper Oligocene to lower Miocene sediments at Ocean Drilling Program (ODP) Leg 199 Sites 1218 and 1219 in the equatorial Pacific, and 110 radiolarian species were identified.Four episodes of significant radiolarian faunal changes were identified: middle late Oligocene (27.5 to 27.3 Ma), latest Oligocene (24.4 Ma), earliest Miocene (23.3 Ma), and middle early Miocene (21.6 Ma). These four episodes approximately coincide with increases and decreases of biogenic silica accumulation rates and increases in δ¹⁸O values coded as “Oi” and “Mi” events. These data indicate that Antarctic glaciations were associated with change of siliceous sedimentation patterns and faunal changes in the equatorial Pacific.Radiolarian fauna was divided into three assemblages based on variations in radiolarian productivity, species richness and the composition of dominant species: a late Oligocene assemblage (27.6 to 24.4 Ma), a transitional assemblage (24.4 to 23.3 Ma) and an early Miocene assemblage (23.3 to 21.2 Ma). The late Oligocene assemblage is characterized by relatively high productivity, low species richness and four dominant species of Tholospyris anthophora, Stichocorys subligata, Lophocyrtis nomas and Lithelius spp. The transitional assemblage represents relatively low values of productivity and species richness, and consists of three dominant species of T. anthophora, S. subligata and L. nomas. The characteristics of the early Miocene assemblage are relatively low productivity, but high species richness. The two dominant species present in this assemblage are T. anthophora and Cyrtocapsella tetrapera. The most significant faunal turnover of radiolarians is marked at the boundary between the transitional/early Miocene assemblages.We also reviewed changes in other microfossil assemblages in the low latitudes during the late Oligocene through early Miocene. The microfossil assemblages of major groups show sequential changes near the Oligocene/Miocene (O/M) boundary (23.8 Ma). Many extinction events and some first occurrences of calcareous nannofossils and many occurrences of radiolarians are found from about 24.8 to 23.3 Ma, and first occurrences of planktic foraminifers and diatoms followed from 23.2 through 22 Ma. Hence, the O/M boundary is identified as a significant level for microfossil evolutions.     

Species richness and rarity of crane flies (Diptera, Tipuloidea) in a boreal mire

Species richness and abundance are central in biodiversity inventories and in measuring the structure of communities. Neglecting the assessment of sampling efficiency may lead to spurious estimates of species richness and conservation value. Our aim was to examine species richness, sampling effectiveness, species-abundance distribution (SAD) and rarity of a boreal, mire-dwelling crane fly (Diptera, Tipuloidea) assemblage in western Finland. 12 Malaise traps dispersed in 4 subplots and standardized sweep net samples were used to collect adult flies from the mire. A total of 23 species and 1,569 specimens were identified. In general all species richness estimators were highly correlated and indicated rather good sampling effort. Sample completeness, expressed as percentage of observed richness divided by estimated richness, was higher for mire-dwellers (mean 75 %) than for all species (mean 63 %). Crane fly assemblages of subplots and combined data fitted best with log-series SAD. Species spatial distribution was positively correlated with average abundance. In other words, the most abundant species occurred in the most of Malaise traps. Seven mire-dwelling species greatly outnumbered (94 % of the collected specimens) all other members in the assemblage, and only one observed species was rare by several definitions (local abundance, extent of occurrence in Finland and area of occupancy). Although the studied assemblage was characterized by commonness, five of the species have threatened status in Europe south of Finland. Separate species richness estimation of all species (vagrants and occasional species included) and focal species (here mire-dwellers) is supported if ecological information is available on the taxonomic group being studied.     

The diversity of beetle assemblages in different habitat types in Sabah, Malaysia

The diversity of beetle assemblages in different habitat types (primary forest, logged forest, acacia plantation and oil palm plantation) in Sabah, Malaysia was investigated using three different methods based on habitat levels (Winkler sampling, flight-interception-trapping and mist-blowing). The overall diversity was extremely high, with 1711 species recorded from only 8028 individuals and 81 families (115 family and subfamily groups). Different degrees of environmental changes had varying effects on the beetle species richness and abundance, with oil palm plantation assemblage being most severely affected, followed by acacia plantation and then logged forest. A few species became numerically dominant in the oil palm plantation. In terms of beetle species composition, the acacia fauna showed much similarity with the logged forest fauna, and the oil palm fauna was very different from the rest. The effects of environmental variables (number of plant species, sapling and tree densities, amount of leaf litter, ground cover, canopy cover, soil pH and compaction) on the beetle assemblage were also investigated. Leaf litter correlated with species richness, abundance and composition of subterranean beetles. Plant species richness, tree and sapling densities correlated with species richness, abundance and composition of understorey beetles while ground cover correlated only with the species richness and abundance of these beetles. Canopy cover correlated only with arboreal beetles. In trophic structure, predators represented more than 40% of the species and individuals. Environmental changes affected the trophic structure with proportionally more herbivores (abundance) but fewer predators (species richness and abundance) in the oil palm plantation. Biodiversity, conservation and practical aspects of pest management were also highlighted in this study.     

Macroecological analysis of the fish fauna inhabiting Cymodocea nodosa seagrass meadows

In this study, patterns in the taxonomic richness and composition of the fish fauna inhabiting Cymodocea nodosa seagrass meadows were described across their entire distribution range in the Mediterranean Sea and adjacent Atlantic Ocean. Specifically, the study tested whether there are differences in the composition of fish assemblages between those ecoregions encompassed by the distribution range of C. nodosa, and whether these differences in composition are connected with differences in bioclimatic affinities of the fish faunas. A literature review resulted in a total of 19 studies, containing 22 fish assemblages at 18 locations. The ichthyofauna associated with C. nodosa seagrass meadows comprises 59 families and 188 species. The western Mediterranean (WM) Sea has the highest species richness (87 species). Fish assemblages from the Macaronesia–Canary Islands, the Sahelian Upwelling, South European Atlantic Shelf and the WM differ, in terms of assemblage composition, relative to other ecoregions. In contrast, the composition of the fish fauna from the central and eastern Mediterranean overlaps. There is a significant serial correlation in fish assemblage composition between adjacent ecoregions along the distribution range of C. nodosa. Dissimilarities in assemblage composition are connected with the geographical separation between locations, and the mean minimum annual seawater temperature is the environmental factor that explains most variation in fish assemblage composition.     

Control of stream insect assemblages: roles of spatial configuration and local environmental factors

Abstract 1. Current views in ecology emphasise that community structure is the sum of multiple processes, with imprints of both regional and local drivers. However, the degree to which stream insect assemblages are structured by spatial configuration (complying with the dispersal‐based neutral hypothesis) and local environmental features (complying with the niche‐based species sorting hypothesis) has not been rigorously examined based on surveys in multiple years. 2. Stream sites in a boreal drainage system were surveyed during three consecutive years and the relative contribution of spatial configuration and local environmental variables to aquatic insect assemblage structure (characterised by both abundance and presence–absence data) was assessed. Separate analyses were conducted for mayflies (Ephemeroptera), stoneflies (Plecoptera), caddisflies (Trichoptera), and non‐biting midges (Diptera: Chironomidae) in each year. 3. There were no relationships between the spatial location and local environmental features of streams in Mantel tests, facilitating exploration of their independent effects on assemblage structure. The study found virtually no effects of spatial location on stream insect assemblages across the study drainage system, as evidenced by Mantel tests and canonical correspondence analyses (CCA). The environmental variables were also rather weakly associated with assemblage structure, with the total amount of explained variation ranging from 9.8% to 31.7% in the CCAs. There were no appreciable differences in the amount of environment‐related explained variation in assemblage structure between mayflies, stoneflies, caddisflies, and midges, but some between‐year differences were noticeable in most insect groups. The environmental variables that were significantly related to assemblage structure exhibited some between‐group and between‐year variability. In general, patterns shown by abundance and presence–absence data were highly similar. 4. It appears that stream insect assemblages comply with the niche‐based species sorting hypothesis in the context of metacommunity ecology. In contrast, the absence of spatial structuring suggests that stream insect assemblages do not comply with the neutral hypothesis, being not strongly dispersal limited at the within‐drainage basin scale.     

Environmental drivers of the bryophyte propagule bank and its comparison with forest-floor assemblage in Central European temperate mixed forests

Species richness, composition and abundance of the bryophyte diaspore bank of Central European temperate mixed forests were compared with the forest-floor bryophyte assemblage. The impact of environmental variables and anthropogenic disturbances, including tree species composition, stand structure, microclimate, light conditions, soil and litter properties, management history, and landscape properties, potentially influencing bryophyte diaspore bank assemblages were explored. Thirty-four, 70–100 years old mixed stands with differing tree species composition were examined in the ?rség National Park, Western Hungary. The diaspore bank was studied by soil collection and cultivation, and data were analysed by multivariate methods. Contrary to the forest-floor bryophyte assemblage, where substrate availability, tree species composition and stand structure were the most influential environmental variables, the composition and abundance of the diaspore bank was mainly affected by site conditions (microclimate, litter and soil properties). Species richness of the bryophyte diaspore bank was lower than that of the forest-floor bryophyte assemblage. Short-lived mosses (colonists, short-lived shuttles) were dominant in the diaspore bank, as opposed to the forest-floor bryophyte community, where perennial mosses dominated. In the studied forests, the importance of the bryophyte diaspore bank was relatively low in the regeneration and maintenance of the forest-floor bryophyte vegetation.