A proposed phylogeny of the flagellated protostelids.

The flagellated members of the group of mycetozoans known as protostelids have been recognized for some time to be members of a monophyletic group which also includes the myxomycetes. This inference was based primarily upon comparisons of the flagellar apparatus of the amoeboflagellate state. However, more detailed comparisons based on the whole life history and comparisons with an outgroup were necessary to have information sufficient to determine the interrelationships within the group. Recent studies of the other states of the life history of protostelids have provided a wealth of additional morphological and developmental characters such that an in depth phylogenetic analysis is possible. The results show that the group can be resolved into two major clades, one of which contains the myxomycetes and the myxomycete-like protostelid genera, Protosporangium, Clastostelium, and Ceratiomyxa, and another which contains the protostelid genera Planoprotostelium, Cavostelium, and Ceratiomyxella. As the myxomycetes appear to be part of the ingroup, and not a sister group to the protostelids, L.S. Olive's subclass Protostelia must be considered paraphyletic.     

A molecular biological approach to the phylogenetic position of the genus Hyperamoeba

In 1923 Alexeieff described a new amoebic species within a new genus and named it Hyperamoeba flagellata. This amoeba exhibits three life cycle stages, an amoeboid trophozoite, a flagellated stage, and a cyst-like the heteroloboseans, the mastigamoebae, and several slime moulds. Since then more strains have been isolated and relationships to the protostelids and cercomonads and to the myxogastrid plasmodial slime moulds have been suggested. However, up to now the classification and phylogenetic position of the hyperamoebae has remained unclear. The aim of our study was to make an approach to the phylogeny of the genus Hyperamoeba with combined morphological and molecular biological data. Since 1988 we have isolated and collected Hyperamoeba-like strains from different aquatic and terrestrial sources. The 18S rDNA-sequences of 8 new Hyperamoeba strains isolated from various habitats were analysed and a cluster analysis was performed including all other available hyperamoebae. Altogether, the results of our study corroborate the relatedness of Hyperamoeba to various slime moulds. However, the hyperamoebae do not seem to be a monophyletic group, clearly putting the validity of the genus Hyperamoeba into question.     

Aquatic protostelids – a study from northeastern Germany

A survey of protostelids in ponds of northeastern Germany showed a high degree of similarity between the species assemblages from submerged aquatic and terrestrial litter. Twelve species were recovered from 115 samples. A statistical analysis of species accumulation curves indicated that 90 % of the total diversity was recovered for both aquatic and terrestrial litter. All of the more common species were observed in both aquatic and terrestrial samples. However, 24 % of all cultures from terrestrial samples were positive for protostelids, compared with only 12 % for aquatic samples. An additional 20 samples collected from the water column did not yield any protostelids. The study indicates that vegetative stages of most protostelids seem to be able to survive and probably multiply on litter submerged in fresh water, but do not live as plankton. Most probably, submerged substrata are sinks for protostelid populations.     

Shallow-water habitats as sources of fallback foods for hominins

Underground storage organs (USOs) have been proposed as critical fallback foods for early hominins in savanna, but there has been little discussion as to which habitats would have been important sources of USOs. USOs consumed by hominins could have included both underwater and underground storage organs, i.e., from both aquatic and terrestrial habitats. Shallow aquatic habitats tend to offer high plant growth rates, high USO densities, and relatively continuous USO availability throughout the year. Baboons in the Okavango delta use aquatic USOs as a fallback food, and aquatic or semiaquatic USOs support high-density human populations in various parts of the world. As expected given fossilization requisites, the African early- to mid-Pleistocene shows an association of Homo and Paranthropus fossils with shallow-water and flooded habitats where high densities of plant-bearing USOs are likely to have occurred. Given that early hominins in the tropics lived in relatively dry habitats, while others occupied temperate latitudes, ripe, fleshy fruits of the type preferred by African apes would not normally have been available year round. We therefore suggest that water-associated USOs were likely to have been key fallback foods, and that dry-season access to aquatic habitats would have been an important predictor of hominin home range quality. This study differs from traditional savanna chimpanzee models of hominin origins by proposing that access to aquatic habitats was a necessary condition for adaptation to savanna habitats. It also raises the possibility that harvesting efficiency in shallow water promoted adaptations for habitual bipedality in early hominins. Am J Phys Anthropol 140:630–642, 2009. © 2009 Wiley-Liss, Inc.     

Eumycetozoa?=?Amoebozoa?: SSUrDNA Phylogeny of Protosteloid Slime Molds and Its Significance for the Amoebozoan Supergroup

Amoebae that make fruiting bodies consisting of a stalk and spores and classified as closely related to the myxogastrids have classically been placed in the taxon Eumycetozoa. Traditionally, there are three groups comprising Eumycetozoa: myxogastrids, dictyostelids, and the so-called protostelids. Dictyostelids and myxogastrids both make multicellular fruiting bodies that may contain hundreds of spores. Protostelids are those amoebae that make simple fruiting bodies consisting of a stalk and one or a few spores. Protostelid-like organisms have been suggested as the progenitors of the myxogastrids and dictyostelids, and they have been used to formulate hypotheses on the evolution of fruiting within the group. Molecular phylogenies have been published for both myxogastrids and dictyostelids, but little molecular phylogenetic work has been done on the protostelids. Here we provide phylogenetic trees based on the small subunit ribosomal RNA gene (SSU) that include 21 protostelids along with publicly available sequences from a wide variety of amoebae and other eukaryotes. SSU trees recover seven well supported clades that contain protostelids but do not appear to be specifically related to one another and are often interspersed among established groups of amoebae that have never been reported to fruit. In fact, we show that at least two taxa unambiguously belong to amoebozoan lineages where fruiting has never been reported. These analyses indicate that we can reject a monophyletic Eumycetozoa, s.l. For this reason, we will hereafter refer to those slime molds with simple fruiting as protosteloid amoebae and/or protosteloid slime molds, not as protostelids. These results add to our understanding of amoebozoan biodiversity, and demonstrate that the paradigms for understanding both nonfruiting and sporulating amoebae must be integrated. Finally, we suggest strategies for future research on protosteloid amoebae and nonfruiting amoebae, and discuss the impact of this work for taxonomists and phylogenomicists.     

A habitat colonisation model for spore-dispersed organisms—Does it work with eumycetozoans?

Spore productivities and establishment probabilities of eumycetozoans were estimated and compared with quantitative data obtained from field surveys, using series of cultures of a given substrate. Spore numbers per spore case were found to increase from one to four in protostelids to up to 10⁵–10⁶ in myxomycetes, whereas average spore size decreased slightly from 14.8 μm for protostelids to 10.3 μm in myxomycetes. Spore numbers of fructifications calculated from dimensions of spores and fruit bodies were in good agreement with direct counts carried out for six species of myxomycetes. A colonisation model is presented that estimates frequencies (as a percent of successfully colonized habitat islands), which is independent of a given density of spore rain and the sexual system of the species being considered. Whereas asexual species need a minimum spore rain of ca 0.7 spores per habitat island to reach a frequency of 50 %, this figure is at least 2.4-fold higher for sexual species, depending from the incompatibility system assumed. Data from cultures indicate that the maximum potential spore rain is usually three orders of magnitude higher than the minimum figure required to create the observed frequencies. Eumycetozoans seem to follow the evolutionary trends predicted by the model. Species with sexual reproductive systems produce often more spores than asexual ones; many morphospecies have sexual and asexual strains; and back-conversion from sexual to asexual reproduction occurs occasionally.     

Evolutionary refugia and ecological refuges: key concepts for conserving Australian arid zone freshwater biodiversity under climate change

Refugia have been suggested as priority sites for conservation under climate change because of their ability to facilitate survival of biota under adverse conditions. Here, we review the likely role of refugial habitats in conserving freshwater biota in arid Australian aquatic systems where the major long‐term climatic influence has been aridification. We introduce a conceptual model that characterizes evolutionary refugia and ecological refuges based on our review of the attributes of aquatic habitats and freshwater taxa (fishes and aquatic invertebrates) in arid Australia. We also identify methods of recognizing likely future refugia and approaches to assessing the vulnerability of arid‐adapted freshwater biota to a warming and drying climate. Evolutionary refugia in arid areas are characterized as permanent, groundwater‐dependent habitats (subterranean aquifers and springs) supporting vicariant relicts and short‐range endemics. Ecological refuges can vary across space and time, depending on the dispersal abilities of aquatic taxa and the geographical proximity and hydrological connectivity of aquatic habitats. The most important are the perennial waterbodies (both groundwater and surface water fed) that support obligate aquatic organisms. These species will persist where suitable habitats are available and dispersal pathways are maintained. For very mobile species (invertebrates with an aerial dispersal phase) evolutionary refugia may also act as ecological refuges. Evolutionary refugia are likely future refugia because their water source (groundwater) is decoupled from local precipitation. However, their biota is extremely vulnerable to changes in local conditions because population extinction risks cannot be abated by the dispersal of individuals from other sites. Conservation planning must incorporate a high level of protection for aquifers that support refugial sites. Ecological refuges are vulnerable to changes in regional climate because they have little thermal or hydrological buffering. Accordingly, conservation planning must focus on maintaining meta‐population processes, especially through dynamic connectivity between aquatic habitats at a landscape scale.     

Amphibious adaptations in a newly recognized amphibious fish: Terrestrial locomotion and the influences of body size and temperature

Amphibious animals are adapted for both aquatic and terrestrial habitats. The conflicting requirements for dual habitats are perhaps most pronounced in the air‐breathing fishes, which represent an intermediate stage between the totally aquatic habitat and terrestrial colonization. A key requirement for amphibious fishes is terrestrial locomotion. The different densities and compositions of air and water impose constraints for efficient terrestrial locomotion that differ from those required for aquatic locomotion. I investigated terrestrial locomotion in a small South African fish, Galaxias ‘nebula’, by exposing 60 individual fish to air in specially designed raceways and quantifying movement type and occurrence as a function of availability of water, fish size and environmental temperature. Nebula showed a sustained undulating form of terrestrial locomotion characteristic of amphibious fishes and also a transient ballistic locomotion (jumps) typical of fully aquatic species. Terrestrial movement was influenced by fish size, with medium‐sized fish undertaking more jumps towards water, and fewer jumps away from water, than their smaller or larger conspecifics. In contrast, axial undulation was mainly influenced by temperature. However, there was no consistent pattern in temperature effects presumably because temperature is just one of a suit of environmental factors that may affect terrestrial locomotion. Nebula's amphibious adaptations allow it to cope with the unpredictability inherent in its natural environment.     

Application of landsat satellite data for mapping aquatic areas in north-eastern Finland

The application of the aquatic area research by computer-assisted Landsat MSS remote sensing is presented. Two lakes in northern Finland were mapped into spectrally identified classes.The open water classes depend mainly on the water quality and depth. The aquatic vegetation classes display the main life-forms (helophyte, nymphaeid, isoetid) and thus the amount of the chlorophyll above, on, or just below the water surface.     

Multi-predator effects across life-history stages: non-additivity of egg- and larval-stage predation in an African treefrog

The effects of multiple predators on their prey are frequently non‐additive because of interactions among predators. When prey shift habitats through ontogeny, many of their predators cannot interact directly. However, predators that occur in different habitats or feed on different prey stages may still interact through indirect effects mediated by prey traits and density. We conducted an experiment to evaluate the combined effects of arboreal egg‐stage and aquatic larval‐stage predators of the African treefrog, Hyperolius spinigularis. Egg and larval predator effects were non‐additive – more Hyperolius survived both predators than predicted from their independent effects. Egg‐stage predator effects on aquatic larval density and size and age at hatching reduced the effectiveness of larval‐stage predators by 70%. Our results indicate that density‐ and trait‐mediated indirect interactions can act across life‐stages and habitats, resulting in non‐additive multi‐predator effects.     

Protostelids from German Beech forests

A survey for protostelids from old-growth beech forests of northeastern Germany resulted in 14 species found in both ground and aerial litter, constituting the first survey of these organisms from Central Europe. Additionally the myxomycete Echinostelium bisporum was recorded as new for Germany. A detailed investigation of randomly sampled dead Fagus leaves (16 leaves on ground, 16 aerial leaves, three replicate cultures per leaf) resulted in 7 species; a hyperbolic regression of the respective species accumulation curve gives the theoretical value of 8.3 species. Protostelids occurred especially at aerial leaves with a high frequency (0.94). A program simulating random spore hits was written to calculate the minimum spore fallout necessary to explain this frequency. The resulting average value of about 3 spores per leaf can well be matched by the potential spore productivity estimated to be about 1000 spores per leaf for the most common species, Protostelium mycophaga.     

Cattle egrets are less able to cope with light refraction than are other herons

The majority of heron species (Aves, Ardeidae) forage on aquatic prey in shallow water. Prey detection, aiming and the beginning of the capture strikes are performed while the heron's eyes are above water. For most angles, as a result of air/water light refraction, the apparent image available to a heron is vertically displaced from the prey's real position. Herons must therefore correct for refraction. We tested the hypothesis that species that forage in aquatic habitats should be more able to correct for image disparity than those of terrestrial habitats. The ability of hand-reared herons of four species to capture stationary prey (fish) underwater (submerged) or in air (aerial) was tested. Three species (little egret Egretta garzetta, squacco heron Ardeola ralloides, and night heron Nycticorax nycticorax) normally forage in aquatic habitats while the fourth (cattle egret Bubulcus ibis) forages in terrestrial habitats. No individuals missed aerial prey. Success rates of little egrets and of squacco herons with submerged prey were high, while night herons became less successful with increased prey depth and/or distance. In cattle egrets, success rate was low and negatively correlated with prey depth. The observed interspecific differences may thus be related to (1) differential ability to correct for air/water light refraction and (2) the species' foraging behaviour. We suggest that cattle egrets are in the process of losing their ability to cope with submerged prey. Copyright 1999 The Association for the Study of Animal Behaviour.     

Myxomycete diversity and distribution from the fossil record to the present

The myxomycetes (plasmodial slime molds or myxogastrids) are a group of eukaryotic microorganisms usually present and sometimes abundant in terrestrial ecosystems. Evidence from molecular studies suggests that the myxomycetes have a significant evolutionary history. However, due to the fragile nature of the fruiting body, fossil records of the group are exceedingly rare. Although most myxomycetes are thought to have very large distributional ranges and many species appear to be cosmopolitan or nearly so, results from recent studies have provided evidence that spatial distribution patterns of these organisms can be successfully related to (1) differences in climate and/or vegetation on a global scale and (2) the ecological differences that exist for particular habitats on a local scale. A detailed examination of the global distribution of four examples (Barbeyella minutissima, Ceratiomyxa morchella, Leocarpus fragilis and Protophysarum phloiogenum) demonstrates that these species have recognizable distribution patterns in spite of the theoretical ability of their spores to bridge continents. Special Issue: Protist diversity and geographic distribution. Guest editor: W. Foissner.     

Spatial distribution of bryophytes along a moisture gradient: an approach using photosynthetic pigments as indicators of stress

Height above water table in aquatic habitats has long been recognized as the key factor for determining the spatial structure of bryophyte assemblages. Using photosynthetic pigments as indicators of stress along a wet-to-dry gradient, I tested whether different habitat preferences were revealed. A field experiment was set up to obtain a semi-natural hydrological gradient. The spatial distribution of species was quantified by determining the pigment content in natural assemblages and by applying the regression equations derived from the experimental manipulation. The species were able to move water in quantities that were statistically significantly different from each other, which was in agreement with the species characteristics and the colony architectures. Photosynthetic pigments responded in a complex way to the water gradient and, for each species, one or more stress indicators were reliable. A wide overlapping of spatial distribution exists in natural conditions, especially in complex habitats like springs. Although in this study a restricted selection of species has been examined, the method proposed to evaluate the theoretical height above water table is coherent with the broad spatial pattern observed. This approach may be particularly useful for understanding both the coexistence of similar species and the spatial distributions of bryophytes in spring habitats in relation to water stress tolerance.     

Viral replication, persistence in water and genetic characterization of two influenza A viruses isolated from surface lake water

Water-borne transmission has been suggested as an important transmission mechanism for Influenza A (IA) viruses in wild duck populations; however, relatively few studies have attempted to detect IA viruses from aquatic habitats. Water-isolated viruses have rarely been genetically characterized and evaluation for persistence in water and infectivity in natural hosts has never been documented. In this study, we focused on two IA viruses (H3N8 and H4N6 subtypes) isolated from surface lake water in Minnesota, USA. We investigated the relative prevalence of the two virus subtypes in wild duck populations at the sampling site and their genetic relatedness to IA viruses isolated in wild waterbirds in North America. Viral persistence under different laboratory conditions (temperature and pH) and replication in experimentally infected Mallards (Anas platyrhynchos) were also characterized. Both viruses were the most prevalent subtype one year following their isolation in lake water. The viruses persisted in water for an extended time period at constant temperature (several weeks) but infectivity rapidly reduced under multiple freeze-thaw cycles. Furthermore, the two isolates efficiently replicated in Mallards. The complete genome characterization supported that these isolates originated from genetic reassortments with other IA viruses circulating in wild duck populations during the year of sampling. Based on phylogenetic analyses, we couldn't identify genetically similar viruses in duck populations in the years following their isolation from lake water. Our study supports the role for water-borne transmission for IA viruses but also highlights that additional field and experimental studies are required to support inter-annual persistence in aquatic habitats.     

Flooding compromises compensatory capacity of an invasive plant: implications for biological control

Plant compensatory growth is proposed to be insidious to biological control and known to vary under different environmental conditions. However, the effects of microsite conditions on compensation capacity and its indirect impacts on biological control of plant invaders have received little attention. Alligator weed, Alternanthera phioxeroides, is an invasive plant worldwide, growing in both aquatic and terrestrial habitats that are often affected by flooding. Biological control insects have been successful in suppressing the plant in many aquatic habitats but have failed in terrestrial habitats. To evaluate the impact of flooding on compensation capacity, we conducted common garden and greenhouse experiments in which plants were grown under different moisture conditions (aquatic versus terrestrial). Our results show that plants were able to fully recover from continued herbivory in the terrestrial habitat, but failed in the aquatic habitat, indicating a flooding-regulated plant compensatory capacity. Also, the grazed plants increased below-ground growth and reproductive root bud formation in the terrestrial habitat, but there was no such difference in the aquatic habitat. Our findings suggest that the differing plant compensatory capacity, affected by flooding, may explain the different biological control efficacy of alligator weed in aquatic and terrestrial habitats. Understanding mechanisms in plant invader compensation in different microsite conditions is important for improving management efficiency.     

The occurrence of Achlya recurva (Saprolegniales, Oomycetes) in hydrocarbon-polluted soil from Argentina

Saprolegniaceae are ubiquitous filamentous water molds. They occur as saprotrophs or parasitic on aquatic and terrestial plants and on aquatic animals, and a number of interesting fungi belonging to the Saprolegniaceae have been isolated from the soil. In the course of an investigation of the water molds in Argentina, an unusual species of Achlya was isolated once from soil collections. Brassica napus seeds were used as bait as well as for the maintenance of this fungus in gross water cultures. Achlya recurva Cornu (Saprolegniales, Oomycetes), was isolated from a hydrocarbon-polluted soil (crude oil) in the neighborhood of an oil tank from a distillery (Ensenada, Buenos Aires Province). This species is reported, described and illustrated for the first time from Argentina. Remarks on the habitat are also made because it was never found in polluted areas.     

Amassing diversity in an ancient lake: evolution of a morphologically diverse parthenogenetic gastropod assemblage in Lake Malawi

Exceptional ecological niche diversity, clear waters and unique divergent selection pressures have often been invoked to explain high morphological and genetic diversity of taxa within ancient lakes. However, it is possible that in some ancient lake taxa high diversity has arisen because these historically stable environments have allowed accumulation of lineages over evolutionary timescales, a process impossible in neighbouring aquatic habitats undergoing desiccation and reflooding. Here we examined the evolution of a unique morphologically diverse assemblage of thiarid gastropods belonging to the Melanoides polymorpha'complex' in Lake Malawi. Using mitochondrial DNA sequences, we found this Lake Malawi complex was not monophyletic, instead sharing common ancestry with Melanoides anomala and Melanoides mweruensis from the Congo Basin. Fossil calibrations of molecular divergence placed the origins of this complex to within the last 4 million years. Nuclear amplified fragment length polymorphism markers revealed sympatric M. polymorpha morphs to be strongly genetically differentiated lineages, and males were absent from our samples indicating that reproduction is predominantly parthenogenetic. These results imply the presence of Lake Malawi as a standing water body over the last million years or more has facilitated accumulation of clonal morphological diversity, a process that has not taken place in more transient freshwater habitats. As such, the historical stability of aquatic environments may have been critical in determining present spatial distributions of biodiversity.     

黏菌代谢产物及其生物活性的研究进展

黏菌代谢产物的研究显示出其较高的应用价值,并取得了较大的进展。本文综述了从黏菌中分离得到的100余个代谢产物,主要包括:脂肪酸、氨基酸、生物碱、萘醌、芳香族化合物、萜类化合物以及酯或其衍生品等。阐述了其抑菌、抗肿瘤、细胞毒及抗氧化活性,简要介绍了化合物的构效关系,同时对黏菌生物活性的研究方法及生物化学特征进行了总结,分析了不同黏菌类群代谢产物的异同。最后对黏菌代谢产物的研究提出了问题与展望。     

A model of the gelada socio-ecological system

Data from three populations of gelada baboons are used to generate a model of the species' socio-ecology that relates time budget requirements to group size, day journey length, and relevant environmental parameters. The model is used to examine the range of environmental conditions under which gelada could survive. This analysis indicates that a grazing primate like the gelada would run out of available time for foraging at just above and just below the altitudes at which they are now found. This suggests that, contrary to previous supposition, gelada were not driven into a retreat habitat by more competitivePapio baboons, but rather withdrew from lower altitude habitats because they could not survive under these conditions as the climate deteriorated during the Holocene.